Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01225

Experiment: R2A with 1-octen-3-ol 0.904549 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS01215 and ABIE40_RS01220 are separated by 99 nucleotidesABIE40_RS01220 and ABIE40_RS01225 are separated by 74 nucleotidesABIE40_RS01225 and ABIE40_RS01230 overlap by 4 nucleotidesABIE40_RS01230 and ABIE40_RS01235 are separated by 2 nucleotidesABIE40_RS01235 and ABIE40_RS01240 are separated by 2 nucleotides ABIE40_RS01215: ABIE40_RS01215 - aminopeptidase, at 241,340 to 242,590 _RS01215 ABIE40_RS01220: ABIE40_RS01220 - glutathione S-transferase family protein, at 242,690 to 243,367 _RS01220 ABIE40_RS01225: ABIE40_RS01225 - MarR family winged helix-turn-helix transcriptional regulator, at 243,442 to 243,882 _RS01225 ABIE40_RS01230: ABIE40_RS01230 - Cys-tRNA(Pro) deacylase, at 243,879 to 244,352 _RS01230 ABIE40_RS01235: ABIE40_RS01235 - ArsC family reductase, at 244,355 to 244,705 _RS01235 ABIE40_RS01240: ABIE40_RS01240 - succinylglutamate desuccinylase/aspartoacylase family protein, at 244,708 to 245,769 _RS01240 Position (kb) 243 244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 242.460 kb on - strand, within ABIE40_RS01215at 242.598 kb on - strandat 242.607 kb on + strandat 242.608 kb on - strandat 242.628 kb on + strandat 242.628 kb on + strandat 242.629 kb on - strandat 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.030 kb on + strand, within ABIE40_RS01220at 243.144 kb on + strand, within ABIE40_RS01220at 243.198 kb on - strand, within ABIE40_RS01220at 243.218 kb on - strand, within ABIE40_RS01220at 243.272 kb on + strand, within ABIE40_RS01220at 243.272 kb on + strand, within ABIE40_RS01220at 243.273 kb on - strand, within ABIE40_RS01220at 243.273 kb on - strand, within ABIE40_RS01220at 243.273 kb on - strand, within ABIE40_RS01220at 243.273 kb on - strand, within ABIE40_RS01220at 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.356 kb on - strandat 243.398 kb on + strandat 243.425 kb on + strandat 243.426 kb on - strandat 243.432 kb on - strandat 243.435 kb on + strandat 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.571 kb on + strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.572 kb on - strand, within ABIE40_RS01225at 243.655 kb on + strand, within ABIE40_RS01225at 243.656 kb on - strand, within ABIE40_RS01225at 243.656 kb on - strand, within ABIE40_RS01225at 243.657 kb on + strand, within ABIE40_RS01225at 243.657 kb on + strand, within ABIE40_RS01225at 243.657 kb on + strand, within ABIE40_RS01225at 243.657 kb on + strand, within ABIE40_RS01225at 243.657 kb on + strand, within ABIE40_RS01225at 243.657 kb on + strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.658 kb on - strand, within ABIE40_RS01225at 243.793 kb on + strand, within ABIE40_RS01225at 243.793 kb on + strand, within ABIE40_RS01225at 243.793 kb on + strand, within ABIE40_RS01225at 243.793 kb on + strand, within ABIE40_RS01225at 243.793 kb on + strand, within ABIE40_RS01225at 243.794 kb on - strand, within ABIE40_RS01225at 243.794 kb on - strand, within ABIE40_RS01225at 243.794 kb on - strand, within ABIE40_RS01225at 243.794 kb on - strand, within ABIE40_RS01225at 243.794 kb on - strand, within ABIE40_RS01225at 243.968 kb on + strand, within ABIE40_RS01230at 243.968 kb on + strand, within ABIE40_RS01230at 243.968 kb on + strand, within ABIE40_RS01230at 243.968 kb on + strand, within ABIE40_RS01230at 243.969 kb on - strand, within ABIE40_RS01230at 243.969 kb on - strand, within ABIE40_RS01230at 243.969 kb on - strand, within ABIE40_RS01230at 243.974 kb on - strand, within ABIE40_RS01230at 243.974 kb on - strand, within ABIE40_RS01230at 244.279 kb on + strand, within ABIE40_RS01230at 244.279 kb on + strand, within ABIE40_RS01230at 244.280 kb on - strand, within ABIE40_RS01230at 244.280 kb on - strand, within ABIE40_RS01230at 244.280 kb on - strand, within ABIE40_RS01230at 244.280 kb on - strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.285 kb on + strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.286 kb on - strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.289 kb on + strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.290 kb on - strand, within ABIE40_RS01230at 244.346 kb on + strandat 244.346 kb on + strandat 244.347 kb on - strandat 244.347 kb on - strandat 244.347 kb on - strandat 244.347 kb on - strandat 244.347 kb on - strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.356 kb on + strandat 244.357 kb on - strandat 244.357 kb on - strandat 244.357 kb on - strandat 244.357 kb on - strandat 244.377 kb on + strandat 244.377 kb on + strandat 244.377 kb on + strandat 244.378 kb on - strandat 244.378 kb on - strandat 244.378 kb on - strandat 244.378 kb on - strandat 244.421 kb on + strand, within ABIE40_RS01235at 244.421 kb on + strand, within ABIE40_RS01235at 244.421 kb on + strand, within ABIE40_RS01235at 244.421 kb on + strand, within ABIE40_RS01235at 244.422 kb on - strand, within ABIE40_RS01235at 244.422 kb on - strand, within ABIE40_RS01235at 244.422 kb on - strand, within ABIE40_RS01235at 244.422 kb on - strand, within ABIE40_RS01235at 244.422 kb on - strand, within ABIE40_RS01235at 244.422 kb on - strand, within ABIE40_RS01235at 244.425 kb on - strand, within ABIE40_RS01235at 244.608 kb on + strand, within ABIE40_RS01235at 244.609 kb on - strand, within ABIE40_RS01235at 244.609 kb on - strand, within ABIE40_RS01235at 244.609 kb on - strand, within ABIE40_RS01235at 244.609 kb on - strand, within ABIE40_RS01235at 244.609 kb on - strand, within ABIE40_RS01235at 244.609 kb on - strand, within ABIE40_RS01235at 244.624 kb on - strand, within ABIE40_RS01235at 244.689 kb on + strandat 244.689 kb on + strandat 244.690 kb on - strandat 244.690 kb on - strandat 244.690 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
remove
242,460 - ABIE40_RS01215 0.90 +0.8
242,598 - -0.4
242,607 + +1.8
242,608 - -0.6
242,628 + -0.6
242,628 + -1.2
242,629 - -0.2
243,030 + ABIE40_RS01220 0.50 -0.4
243,030 + ABIE40_RS01220 0.50 +0.3
243,030 + ABIE40_RS01220 0.50 -1.0
243,030 + ABIE40_RS01220 0.50 -0.1
243,030 + ABIE40_RS01220 0.50 -0.3
243,030 + ABIE40_RS01220 0.50 +0.5
243,030 + ABIE40_RS01220 0.50 +0.8
243,030 + ABIE40_RS01220 0.50 +0.8
243,144 + ABIE40_RS01220 0.67 -3.8
243,198 - ABIE40_RS01220 0.75 -0.5
243,218 - ABIE40_RS01220 0.78 -1.2
243,272 + ABIE40_RS01220 0.86 +0.2
243,272 + ABIE40_RS01220 0.86 +0.8
243,273 - ABIE40_RS01220 0.86 +0.0
243,273 - ABIE40_RS01220 0.86 -1.1
243,273 - ABIE40_RS01220 0.86 -0.3
243,273 - ABIE40_RS01220 0.86 +1.3
243,327 + -0.1
243,327 + -1.0
243,327 + -1.3
243,327 + +0.1
243,328 - -1.1
243,328 - +1.2
243,328 - -0.2
243,328 - +0.8
243,328 - -0.0
243,328 - -2.3
243,356 - +0.0
243,398 + -0.0
243,425 + +0.2
243,426 - -0.0
243,432 - +1.3
243,435 + -0.5
243,571 + ABIE40_RS01225 0.29 +1.2
243,571 + ABIE40_RS01225 0.29 -1.7
243,571 + ABIE40_RS01225 0.29 -0.6
243,571 + ABIE40_RS01225 0.29 -2.2
243,571 + ABIE40_RS01225 0.29 -0.1
243,571 + ABIE40_RS01225 0.29 -0.8
243,571 + ABIE40_RS01225 0.29 -1.4
243,571 + ABIE40_RS01225 0.29 +1.2
243,571 + ABIE40_RS01225 0.29 -0.5
243,571 + ABIE40_RS01225 0.29 -1.2
243,571 + ABIE40_RS01225 0.29 -2.9
243,571 + ABIE40_RS01225 0.29 +0.3
243,571 + ABIE40_RS01225 0.29 -0.5
243,571 + ABIE40_RS01225 0.29 -0.8
243,572 - ABIE40_RS01225 0.29 -1.8
243,572 - ABIE40_RS01225 0.29 -2.2
243,572 - ABIE40_RS01225 0.29 -1.2
243,572 - ABIE40_RS01225 0.29 -0.6
243,572 - ABIE40_RS01225 0.29 -0.0
243,572 - ABIE40_RS01225 0.29 -0.3
243,572 - ABIE40_RS01225 0.29 -0.9
243,572 - ABIE40_RS01225 0.29 -0.5
243,572 - ABIE40_RS01225 0.29 -2.3
243,572 - ABIE40_RS01225 0.29 -1.4
243,655 + ABIE40_RS01225 0.48 -1.3
243,656 - ABIE40_RS01225 0.49 +3.2
243,656 - ABIE40_RS01225 0.49 -2.7
243,657 + ABIE40_RS01225 0.49 -2.5
243,657 + ABIE40_RS01225 0.49 +0.6
243,657 + ABIE40_RS01225 0.49 -0.8
243,657 + ABIE40_RS01225 0.49 +0.8
243,657 + ABIE40_RS01225 0.49 -0.3
243,657 + ABIE40_RS01225 0.49 -0.3
243,658 - ABIE40_RS01225 0.49 -1.0
243,658 - ABIE40_RS01225 0.49 -2.3
243,658 - ABIE40_RS01225 0.49 +0.2
243,658 - ABIE40_RS01225 0.49 -1.0
243,658 - ABIE40_RS01225 0.49 -0.5
243,658 - ABIE40_RS01225 0.49 -2.7
243,658 - ABIE40_RS01225 0.49 -2.2
243,658 - ABIE40_RS01225 0.49 +0.8
243,658 - ABIE40_RS01225 0.49 +0.3
243,793 + ABIE40_RS01225 0.80 -1.8
243,793 + ABIE40_RS01225 0.80 -0.0
243,793 + ABIE40_RS01225 0.80 -0.4
243,793 + ABIE40_RS01225 0.80 +0.3
243,793 + ABIE40_RS01225 0.80 -0.1
243,794 - ABIE40_RS01225 0.80 +0.2
243,794 - ABIE40_RS01225 0.80 -0.2
243,794 - ABIE40_RS01225 0.80 -1.2
243,794 - ABIE40_RS01225 0.80 -0.9
243,794 - ABIE40_RS01225 0.80 -1.4
243,968 + ABIE40_RS01230 0.19 +1.4
243,968 + ABIE40_RS01230 0.19 -0.7
243,968 + ABIE40_RS01230 0.19 +0.1
243,968 + ABIE40_RS01230 0.19 +0.5
243,969 - ABIE40_RS01230 0.19 -0.1
243,969 - ABIE40_RS01230 0.19 -0.3
243,969 - ABIE40_RS01230 0.19 -0.8
243,974 - ABIE40_RS01230 0.20 +1.8
243,974 - ABIE40_RS01230 0.20 -1.5
244,279 + ABIE40_RS01230 0.84 -0.1
244,279 + ABIE40_RS01230 0.84 +0.5
244,280 - ABIE40_RS01230 0.85 -0.6
244,280 - ABIE40_RS01230 0.85 +0.4
244,280 - ABIE40_RS01230 0.85 -1.3
244,280 - ABIE40_RS01230 0.85 +0.9
244,285 + ABIE40_RS01230 0.86 +2.2
244,285 + ABIE40_RS01230 0.86 +0.8
244,285 + ABIE40_RS01230 0.86 -0.2
244,285 + ABIE40_RS01230 0.86 +1.2
244,285 + ABIE40_RS01230 0.86 -1.8
244,285 + ABIE40_RS01230 0.86 -0.8
244,285 + ABIE40_RS01230 0.86 -0.1
244,285 + ABIE40_RS01230 0.86 -2.7
244,286 - ABIE40_RS01230 0.86 -0.4
244,286 - ABIE40_RS01230 0.86 -0.7
244,286 - ABIE40_RS01230 0.86 -1.1
244,286 - ABIE40_RS01230 0.86 -3.0
244,286 - ABIE40_RS01230 0.86 -0.8
244,286 - ABIE40_RS01230 0.86 -2.3
244,286 - ABIE40_RS01230 0.86 +0.5
244,286 - ABIE40_RS01230 0.86 +0.4
244,286 - ABIE40_RS01230 0.86 -0.2
244,286 - ABIE40_RS01230 0.86 +0.8
244,289 + ABIE40_RS01230 0.86 +0.2
244,289 + ABIE40_RS01230 0.86 -1.2
244,289 + ABIE40_RS01230 0.86 -0.3
244,289 + ABIE40_RS01230 0.86 -1.6
244,289 + ABIE40_RS01230 0.86 -0.2
244,289 + ABIE40_RS01230 0.86 -1.0
244,289 + ABIE40_RS01230 0.86 +1.3
244,289 + ABIE40_RS01230 0.86 -0.4
244,290 - ABIE40_RS01230 0.87 -2.5
244,290 - ABIE40_RS01230 0.87 -0.0
244,290 - ABIE40_RS01230 0.87 -0.2
244,290 - ABIE40_RS01230 0.87 +3.2
244,290 - ABIE40_RS01230 0.87 -0.3
244,290 - ABIE40_RS01230 0.87 +0.3
244,290 - ABIE40_RS01230 0.87 -0.2
244,290 - ABIE40_RS01230 0.87 -1.6
244,290 - ABIE40_RS01230 0.87 -0.1
244,290 - ABIE40_RS01230 0.87 +0.5
244,290 - ABIE40_RS01230 0.87 -0.2
244,346 + +0.4
244,346 + -1.6
244,347 - +0.8
244,347 - +0.2
244,347 - +0.2
244,347 - +0.3
244,347 - -0.2
244,356 + -0.2
244,356 + -1.6
244,356 + +0.2
244,356 + -0.5
244,356 + -1.5
244,356 + +0.8
244,356 + -0.8
244,356 + -0.3
244,357 - -0.4
244,357 - +0.1
244,357 - -0.6
244,357 - -0.5
244,377 + -1.3
244,377 + +0.6
244,377 + +1.6
244,378 - -1.2
244,378 - +0.3
244,378 - +0.1
244,378 - +0.6
244,421 + ABIE40_RS01235 0.19 -0.5
244,421 + ABIE40_RS01235 0.19 +1.0
244,421 + ABIE40_RS01235 0.19 +0.5
244,421 + ABIE40_RS01235 0.19 +2.8
244,422 - ABIE40_RS01235 0.19 +1.0
244,422 - ABIE40_RS01235 0.19 -2.9
244,422 - ABIE40_RS01235 0.19 +0.2
244,422 - ABIE40_RS01235 0.19 -1.2
244,422 - ABIE40_RS01235 0.19 +0.7
244,422 - ABIE40_RS01235 0.19 +0.3
244,425 - ABIE40_RS01235 0.20 -1.1
244,608 + ABIE40_RS01235 0.72 -0.2
244,609 - ABIE40_RS01235 0.72 -0.1
244,609 - ABIE40_RS01235 0.72 +2.4
244,609 - ABIE40_RS01235 0.72 +0.1
244,609 - ABIE40_RS01235 0.72 -0.9
244,609 - ABIE40_RS01235 0.72 -2.9
244,609 - ABIE40_RS01235 0.72 +0.6
244,624 - ABIE40_RS01235 0.77 +1.4
244,689 + -0.9
244,689 + -1.3
244,690 - -1.5
244,690 - -0.6
244,690 - +0.2

Or see this region's nucleotide sequence