Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30960 and ABIE40_RS30965 overlap by 4 nucleotides ABIE40_RS30965 and ABIE40_RS30970 overlap by 4 nucleotides
ABIE40_RS30960: ABIE40_RS30960 - glycosyltransferase, at 887,941 to 889,071
_RS30960
ABIE40_RS30965: ABIE40_RS30965 - glycosyltransferase, at 889,068 to 890,159
_RS30965
ABIE40_RS30970: ABIE40_RS30970 - glycosyltransferase, at 890,156 to 891,268
_RS30970
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 888.069 kb on + strand, within ABIE40_RS30960 at 888.069 kb on + strand, within ABIE40_RS30960 at 888.070 kb on - strand, within ABIE40_RS30960 at 888.358 kb on + strand, within ABIE40_RS30960 at 888.400 kb on + strand, within ABIE40_RS30960 at 888.400 kb on + strand, within ABIE40_RS30960 at 888.554 kb on - strand, within ABIE40_RS30960 at 888.554 kb on - strand, within ABIE40_RS30960 at 888.649 kb on - strand, within ABIE40_RS30960 at 888.655 kb on + strand, within ABIE40_RS30960 at 888.655 kb on + strand, within ABIE40_RS30960 at 888.737 kb on - strand, within ABIE40_RS30960 at 888.857 kb on - strand, within ABIE40_RS30960 at 888.857 kb on - strand, within ABIE40_RS30960 at 889.014 kb on + strand at 889.014 kb on + strand at 889.131 kb on + strand at 889.145 kb on - strand at 889.145 kb on - strand at 889.145 kb on - strand at 889.145 kb on - strand at 889.182 kb on + strand, within ABIE40_RS30965 at 889.182 kb on + strand, within ABIE40_RS30965 at 889.276 kb on + strand, within ABIE40_RS30965 at 889.531 kb on - strand, within ABIE40_RS30965 at 889.531 kb on - strand, within ABIE40_RS30965 at 889.567 kb on - strand, within ABIE40_RS30965 at 889.703 kb on + strand, within ABIE40_RS30965 at 889.703 kb on + strand, within ABIE40_RS30965 at 889.817 kb on + strand, within ABIE40_RS30965 at 889.839 kb on - strand, within ABIE40_RS30965 at 889.839 kb on - strand, within ABIE40_RS30965 at 890.085 kb on + strand at 890.085 kb on + strand at 890.085 kb on + strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.086 kb on - strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.355 kb on - strand, within ABIE40_RS30970 at 890.430 kb on - strand, within ABIE40_RS30970 at 890.496 kb on - strand, within ABIE40_RS30970 at 890.549 kb on + strand, within ABIE40_RS30970 at 890.736 kb on - strand, within ABIE40_RS30970 at 890.944 kb on + strand, within ABIE40_RS30970 at 890.944 kb on + strand, within ABIE40_RS30970 at 890.944 kb on + strand, within ABIE40_RS30970 at 890.945 kb on - strand, within ABIE40_RS30970 at 890.945 kb on - strand, within ABIE40_RS30970 at 890.945 kb on - strand, within ABIE40_RS30970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 888,069 + ABIE40_RS30960 0.11 -0.7 888,069 + ABIE40_RS30960 0.11 -3.1 888,070 - ABIE40_RS30960 0.11 -0.5 888,358 + ABIE40_RS30960 0.37 +0.3 888,400 + ABIE40_RS30960 0.41 -0.7 888,400 + ABIE40_RS30960 0.41 +2.3 888,554 - ABIE40_RS30960 0.54 +1.3 888,554 - ABIE40_RS30960 0.54 -1.0 888,649 - ABIE40_RS30960 0.63 +0.3 888,655 + ABIE40_RS30960 0.63 +1.1 888,655 + ABIE40_RS30960 0.63 +0.7 888,737 - ABIE40_RS30960 0.70 +2.3 888,857 - ABIE40_RS30960 0.81 -0.7 888,857 - ABIE40_RS30960 0.81 +0.4 889,014 + -1.2 889,014 + +1.3 889,131 + +1.0 889,145 - -0.2 889,145 - -0.3 889,145 - -0.3 889,145 - +0.3 889,182 + ABIE40_RS30965 0.10 +0.3 889,182 + ABIE40_RS30965 0.10 -0.0 889,276 + ABIE40_RS30965 0.19 -0.5 889,531 - ABIE40_RS30965 0.42 -0.5 889,531 - ABIE40_RS30965 0.42 +0.9 889,567 - ABIE40_RS30965 0.46 +1.3 889,703 + ABIE40_RS30965 0.58 +3.5 889,703 + ABIE40_RS30965 0.58 -1.3 889,817 + ABIE40_RS30965 0.69 -1.2 889,839 - ABIE40_RS30965 0.71 +0.7 889,839 - ABIE40_RS30965 0.71 -0.0 890,085 + -1.3 890,085 + +0.3 890,085 + -0.3 890,086 - -2.0 890,086 - +0.9 890,086 - -1.4 890,086 - -0.5 890,086 - +1.3 890,086 - +0.3 890,119 + +2.7 890,119 + +0.5 890,355 - ABIE40_RS30970 0.18 -0.3 890,430 - ABIE40_RS30970 0.25 -1.0 890,496 - ABIE40_RS30970 0.31 +0.5 890,549 + ABIE40_RS30970 0.35 +1.3 890,736 - ABIE40_RS30970 0.52 -0.0 890,944 + ABIE40_RS30970 0.71 -1.2 890,944 + ABIE40_RS30970 0.71 -2.8 890,944 + ABIE40_RS30970 0.71 -0.0 890,945 - ABIE40_RS30970 0.71 +0.3 890,945 - ABIE40_RS30970 0.71 +0.7 890,945 - ABIE40_RS30970 0.71 +1.1
Or see this region's nucleotide sequence