Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30785

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30780 and ABIE40_RS30785 are separated by 6 nucleotidesABIE40_RS30785 and ABIE40_RS30790 are separated by 225 nucleotides ABIE40_RS30780: ABIE40_RS30780 - malto-oligosyltrehalose trehalohydrolase, at 844,120 to 845,901 _RS30780 ABIE40_RS30785: ABIE40_RS30785 - 4-alpha-glucanotransferase, at 845,908 to 847,791 _RS30785 ABIE40_RS30790: ABIE40_RS30790 - manganese catalase family protein, at 848,017 to 848,874 _RS30790 Position (kb) 845 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 845.084 kb on + strand, within ABIE40_RS30780at 845.085 kb on - strand, within ABIE40_RS30780at 845.085 kb on - strand, within ABIE40_RS30780at 845.100 kb on + strand, within ABIE40_RS30780at 845.101 kb on - strand, within ABIE40_RS30780at 845.132 kb on - strand, within ABIE40_RS30780at 845.140 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.205 kb on + strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.206 kb on - strand, within ABIE40_RS30780at 845.212 kb on + strand, within ABIE40_RS30780at 845.267 kb on + strand, within ABIE40_RS30780at 845.268 kb on - strand, within ABIE40_RS30780at 845.319 kb on + strand, within ABIE40_RS30780at 845.320 kb on - strand, within ABIE40_RS30780at 845.325 kb on + strand, within ABIE40_RS30780at 845.326 kb on - strand, within ABIE40_RS30780at 845.326 kb on - strand, within ABIE40_RS30780at 845.368 kb on + strand, within ABIE40_RS30780at 845.368 kb on + strand, within ABIE40_RS30780at 845.369 kb on - strand, within ABIE40_RS30780at 845.369 kb on - strand, within ABIE40_RS30780at 845.391 kb on + strand, within ABIE40_RS30780at 845.391 kb on + strand, within ABIE40_RS30780at 845.392 kb on - strand, within ABIE40_RS30780at 845.400 kb on + strand, within ABIE40_RS30780at 845.985 kb on + strandat 845.985 kb on + strandat 845.986 kb on - strandat 845.986 kb on - strandat 846.109 kb on - strand, within ABIE40_RS30785at 846.380 kb on - strand, within ABIE40_RS30785at 846.380 kb on - strand, within ABIE40_RS30785at 846.753 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.898 kb on + strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.899 kb on - strand, within ABIE40_RS30785at 846.973 kb on + strand, within ABIE40_RS30785at 846.973 kb on + strand, within ABIE40_RS30785at 846.974 kb on - strand, within ABIE40_RS30785at 847.129 kb on + strand, within ABIE40_RS30785at 847.129 kb on + strand, within ABIE40_RS30785at 847.129 kb on + strand, within ABIE40_RS30785at 847.129 kb on + strand, within ABIE40_RS30785at 847.130 kb on - strand, within ABIE40_RS30785at 847.158 kb on - strand, within ABIE40_RS30785at 847.260 kb on + strand, within ABIE40_RS30785at 847.261 kb on - strand, within ABIE40_RS30785at 847.270 kb on + strand, within ABIE40_RS30785at 847.271 kb on - strand, within ABIE40_RS30785at 847.285 kb on + strand, within ABIE40_RS30785at 847.423 kb on - strand, within ABIE40_RS30785at 847.685 kb on - strandat 847.706 kb on + strandat 847.706 kb on + strandat 847.789 kb on + strandat 847.812 kb on - strandat 847.903 kb on - strandat 847.903 kb on - strandat 847.903 kb on - strandat 847.950 kb on - strandat 847.988 kb on + strandat 847.988 kb on + strandat 847.988 kb on + strandat 848.012 kb on + strandat 848.012 kb on + strandat 848.012 kb on + strandat 848.013 kb on - strandat 848.190 kb on + strand, within ABIE40_RS30790at 848.307 kb on + strand, within ABIE40_RS30790at 848.409 kb on + strand, within ABIE40_RS30790at 848.409 kb on + strand, within ABIE40_RS30790at 848.473 kb on + strand, within ABIE40_RS30790at 848.473 kb on + strand, within ABIE40_RS30790at 848.474 kb on - strand, within ABIE40_RS30790at 848.474 kb on - strand, within ABIE40_RS30790at 848.508 kb on - strand, within ABIE40_RS30790

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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845,084 + ABIE40_RS30780 0.54 -0.9
845,085 - ABIE40_RS30780 0.54 -2.8
845,085 - ABIE40_RS30780 0.54 -2.1
845,100 + ABIE40_RS30780 0.55 +1.3
845,101 - ABIE40_RS30780 0.55 +0.9
845,132 - ABIE40_RS30780 0.57 -0.3
845,140 + ABIE40_RS30780 0.57 +0.5
845,205 + ABIE40_RS30780 0.61 +2.3
845,205 + ABIE40_RS30780 0.61 -0.3
845,205 + ABIE40_RS30780 0.61 -1.8
845,205 + ABIE40_RS30780 0.61 +0.3
845,206 - ABIE40_RS30780 0.61 -1.3
845,206 - ABIE40_RS30780 0.61 -0.3
845,206 - ABIE40_RS30780 0.61 +0.3
845,206 - ABIE40_RS30780 0.61 -2.6
845,212 + ABIE40_RS30780 0.61 -0.6
845,267 + ABIE40_RS30780 0.64 +1.3
845,268 - ABIE40_RS30780 0.64 -2.3
845,319 + ABIE40_RS30780 0.67 -1.2
845,320 - ABIE40_RS30780 0.67 -0.3
845,325 + ABIE40_RS30780 0.68 -0.5
845,326 - ABIE40_RS30780 0.68 +0.3
845,326 - ABIE40_RS30780 0.68 -1.3
845,368 + ABIE40_RS30780 0.70 +1.0
845,368 + ABIE40_RS30780 0.70 +0.7
845,369 - ABIE40_RS30780 0.70 -0.3
845,369 - ABIE40_RS30780 0.70 -1.7
845,391 + ABIE40_RS30780 0.71 -1.2
845,391 + ABIE40_RS30780 0.71 -1.0
845,392 - ABIE40_RS30780 0.71 -1.4
845,400 + ABIE40_RS30780 0.72 +0.2
845,985 + -2.2
845,985 + +1.5
845,986 - -2.3
845,986 - +0.2
846,109 - ABIE40_RS30785 0.11 +0.4
846,380 - ABIE40_RS30785 0.25 -0.7
846,380 - ABIE40_RS30785 0.25 +0.7
846,753 + ABIE40_RS30785 0.45 -2.1
846,898 + ABIE40_RS30785 0.53 +0.7
846,898 + ABIE40_RS30785 0.53 -1.3
846,898 + ABIE40_RS30785 0.53 -0.0
846,898 + ABIE40_RS30785 0.53 -1.5
846,899 - ABIE40_RS30785 0.53 -0.3
846,899 - ABIE40_RS30785 0.53 +1.9
846,899 - ABIE40_RS30785 0.53 +1.2
846,899 - ABIE40_RS30785 0.53 -1.0
846,973 + ABIE40_RS30785 0.57 -0.3
846,973 + ABIE40_RS30785 0.57 -1.0
846,974 - ABIE40_RS30785 0.57 +1.6
847,129 + ABIE40_RS30785 0.65 +0.3
847,129 + ABIE40_RS30785 0.65 -2.2
847,129 + ABIE40_RS30785 0.65 -0.3
847,129 + ABIE40_RS30785 0.65 -0.0
847,130 - ABIE40_RS30785 0.65 +2.3
847,158 - ABIE40_RS30785 0.66 -0.0
847,260 + ABIE40_RS30785 0.72 -0.1
847,261 - ABIE40_RS30785 0.72 +2.3
847,270 + ABIE40_RS30785 0.72 -1.5
847,271 - ABIE40_RS30785 0.72 +2.3
847,285 + ABIE40_RS30785 0.73 -0.5
847,423 - ABIE40_RS30785 0.80 -0.3
847,685 - -1.6
847,706 + +2.3
847,706 + +0.5
847,789 + +2.3
847,812 - +2.0
847,903 - -1.4
847,903 - -0.7
847,903 - -2.0
847,950 - -0.1
847,988 + +1.7
847,988 + +1.2
847,988 + -1.5
848,012 + -1.9
848,012 + +2.3
848,012 + -1.3
848,013 - -1.0
848,190 + ABIE40_RS30790 0.20 +1.6
848,307 + ABIE40_RS30790 0.34 +0.6
848,409 + ABIE40_RS30790 0.46 +2.3
848,409 + ABIE40_RS30790 0.46 -0.0
848,473 + ABIE40_RS30790 0.53 -0.5
848,473 + ABIE40_RS30790 0.53 +0.7
848,474 - ABIE40_RS30790 0.53 -0.5
848,474 - ABIE40_RS30790 0.53 +0.7
848,508 - ABIE40_RS30790 0.57 +1.3

Or see this region's nucleotide sequence