Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30560 and ABIE40_RS30565 are separated by 272 nucleotides ABIE40_RS30565 and ABIE40_RS30570 are separated by 316 nucleotides ABIE40_RS30570 and ABIE40_RS30575 are separated by 49 nucleotides
ABIE40_RS30560: ABIE40_RS30560 - hypothetical protein, at 797,423 to 797,962
_RS30560
ABIE40_RS30565: ABIE40_RS30565 - hypothetical protein, at 798,235 to 798,558
_RS30565
ABIE40_RS30570: ABIE40_RS30570 - Hsp20 family protein, at 798,875 to 799,345
_RS30570
ABIE40_RS30575: ABIE40_RS30575 - hypothetical protein, at 799,395 to 799,637
_RS30575
Position (kb) 798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 797.584 kb on + strand, within ABIE40_RS30560 at 797.585 kb on - strand, within ABIE40_RS30560 at 797.585 kb on - strand, within ABIE40_RS30560 at 797.683 kb on + strand, within ABIE40_RS30560 at 797.683 kb on + strand, within ABIE40_RS30560 at 797.683 kb on + strand, within ABIE40_RS30560 at 797.683 kb on + strand, within ABIE40_RS30560 at 797.685 kb on + strand, within ABIE40_RS30560 at 797.695 kb on + strand, within ABIE40_RS30560 at 797.710 kb on + strand, within ABIE40_RS30560 at 797.737 kb on + strand, within ABIE40_RS30560 at 797.737 kb on + strand, within ABIE40_RS30560 at 797.737 kb on + strand, within ABIE40_RS30560 at 797.738 kb on - strand, within ABIE40_RS30560 at 797.741 kb on - strand, within ABIE40_RS30560 at 797.741 kb on - strand, within ABIE40_RS30560 at 797.803 kb on + strand, within ABIE40_RS30560 at 797.803 kb on + strand, within ABIE40_RS30560 at 797.804 kb on - strand, within ABIE40_RS30560 at 797.856 kb on + strand, within ABIE40_RS30560 at 797.857 kb on - strand, within ABIE40_RS30560 at 798.058 kb on + strand at 798.059 kb on - strand at 798.059 kb on - strand at 798.167 kb on + strand at 798.167 kb on + strand at 798.167 kb on + strand at 798.168 kb on - strand at 798.258 kb on + strand at 798.258 kb on + strand at 798.258 kb on + strand at 798.258 kb on + strand at 798.258 kb on + strand at 798.258 kb on + strand at 798.329 kb on - strand, within ABIE40_RS30565 at 798.347 kb on + strand, within ABIE40_RS30565 at 798.393 kb on - strand, within ABIE40_RS30565 at 798.490 kb on + strand, within ABIE40_RS30565 at 798.491 kb on - strand, within ABIE40_RS30565 at 798.589 kb on - strand at 798.600 kb on - strand at 798.706 kb on + strand at 798.905 kb on + strand at 798.905 kb on + strand at 798.905 kb on + strand at 798.907 kb on + strand at 798.907 kb on + strand at 798.908 kb on - strand at 799.021 kb on + strand, within ABIE40_RS30570 at 799.021 kb on + strand, within ABIE40_RS30570 at 799.069 kb on + strand, within ABIE40_RS30570 at 799.192 kb on + strand, within ABIE40_RS30570 at 799.261 kb on + strand, within ABIE40_RS30570 at 799.261 kb on + strand, within ABIE40_RS30570 at 799.371 kb on + strand at 799.394 kb on + strand at 799.416 kb on - strand at 799.431 kb on + strand, within ABIE40_RS30575 at 799.432 kb on - strand, within ABIE40_RS30575 at 799.432 kb on - strand, within ABIE40_RS30575
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 797,584 + ABIE40_RS30560 0.30 -0.5 797,585 - ABIE40_RS30560 0.30 -1.2 797,585 - ABIE40_RS30560 0.30 -0.2 797,683 + ABIE40_RS30560 0.48 -2.6 797,683 + ABIE40_RS30560 0.48 +0.7 797,683 + ABIE40_RS30560 0.48 +2.3 797,683 + ABIE40_RS30560 0.48 +0.4 797,685 + ABIE40_RS30560 0.49 +0.6 797,695 + ABIE40_RS30560 0.50 -0.5 797,710 + ABIE40_RS30560 0.53 +0.3 797,737 + ABIE40_RS30560 0.58 -0.3 797,737 + ABIE40_RS30560 0.58 +2.3 797,737 + ABIE40_RS30560 0.58 -1.0 797,738 - ABIE40_RS30560 0.58 -2.8 797,741 - ABIE40_RS30560 0.59 +2.3 797,741 - ABIE40_RS30560 0.59 -0.5 797,803 + ABIE40_RS30560 0.70 -0.0 797,803 + ABIE40_RS30560 0.70 -0.8 797,804 - ABIE40_RS30560 0.71 +0.6 797,856 + ABIE40_RS30560 0.80 +1.3 797,857 - ABIE40_RS30560 0.80 +1.3 798,058 + +1.2 798,059 - +2.3 798,059 - -2.1 798,167 + +0.1 798,167 + -0.3 798,167 + -1.3 798,168 - +2.1 798,258 + +0.9 798,258 + +1.3 798,258 + +0.7 798,258 + +0.8 798,258 + +0.2 798,258 + -1.5 798,329 - ABIE40_RS30565 0.29 -1.6 798,347 + ABIE40_RS30565 0.35 -0.5 798,393 - ABIE40_RS30565 0.49 -0.2 798,490 + ABIE40_RS30565 0.79 -2.1 798,491 - ABIE40_RS30565 0.79 -0.7 798,589 - +0.6 798,600 - +0.5 798,706 + -0.7 798,905 + -1.0 798,905 + +2.3 798,905 + +0.0 798,907 + +2.1 798,907 + -0.3 798,908 - +1.8 799,021 + ABIE40_RS30570 0.31 +0.1 799,021 + ABIE40_RS30570 0.31 +1.3 799,069 + ABIE40_RS30570 0.41 +1.0 799,192 + ABIE40_RS30570 0.67 +0.7 799,261 + ABIE40_RS30570 0.82 +0.4 799,261 + ABIE40_RS30570 0.82 +0.2 799,371 + +1.3 799,394 + -0.6 799,416 - +2.3 799,431 + ABIE40_RS30575 0.15 -1.2 799,432 - ABIE40_RS30575 0.15 +1.0 799,432 - ABIE40_RS30575 0.15 +2.3
Or see this region's nucleotide sequence