Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29940 and ABIE40_RS29945 are separated by 251 nucleotides ABIE40_RS29945 and ABIE40_RS29950 are separated by 160 nucleotides ABIE40_RS29950 and ABIE40_RS29955 are separated by 179 nucleotides ABIE40_RS29955 and ABIE40_RS29960 are separated by 88 nucleotides
ABIE40_RS29940: ABIE40_RS29940 - transcriptional regulator, at 679,430 to 679,981
_RS29940
ABIE40_RS29945: ABIE40_RS29945 - hypothetical protein, at 680,233 to 680,448
_RS29945
ABIE40_RS29950: ABIE40_RS29950 - hypothetical protein, at 680,609 to 680,839
_RS29950
ABIE40_RS29955: ABIE40_RS29955 - alpha/beta hydrolase, at 681,019 to 681,408
_RS29955
ABIE40_RS29960: ABIE40_RS29960 - AraC family transcriptional regulator, at 681,497 to 681,682
_RS29960
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 679.663 kb on + strand, within ABIE40_RS29940 at 679.663 kb on + strand, within ABIE40_RS29940 at 679.663 kb on + strand, within ABIE40_RS29940 at 679.663 kb on + strand, within ABIE40_RS29940 at 679.663 kb on + strand, within ABIE40_RS29940 at 679.664 kb on - strand, within ABIE40_RS29940 at 679.664 kb on - strand, within ABIE40_RS29940 at 679.932 kb on + strand at 679.932 kb on + strand at 679.933 kb on - strand at 679.933 kb on - strand at 679.936 kb on + strand at 679.936 kb on + strand at 679.936 kb on + strand at 679.936 kb on + strand at 679.936 kb on + strand at 679.936 kb on + strand at 679.936 kb on + strand at 679.937 kb on - strand at 679.937 kb on - strand at 679.937 kb on - strand at 679.937 kb on - strand at 679.937 kb on - strand at 679.937 kb on - strand at 679.937 kb on - strand at 679.973 kb on + strand at 679.974 kb on - strand at 680.168 kb on + strand at 680.168 kb on + strand at 680.169 kb on - strand at 680.169 kb on - strand at 680.169 kb on - strand at 680.169 kb on - strand at 680.169 kb on - strand at 680.196 kb on + strand at 680.250 kb on + strand at 680.250 kb on + strand at 680.322 kb on + strand, within ABIE40_RS29945 at 680.330 kb on - strand, within ABIE40_RS29945 at 680.352 kb on + strand, within ABIE40_RS29945 at 680.352 kb on + strand, within ABIE40_RS29945 at 680.361 kb on + strand, within ABIE40_RS29945 at 680.443 kb on - strand at 680.459 kb on + strand at 680.459 kb on + strand at 680.459 kb on + strand at 680.460 kb on - strand at 680.465 kb on + strand at 680.465 kb on + strand at 680.465 kb on + strand at 680.466 kb on - strand at 680.466 kb on - strand at 680.466 kb on - strand at 680.494 kb on + strand at 680.495 kb on - strand at 680.495 kb on - strand at 680.495 kb on - strand at 680.495 kb on - strand at 680.495 kb on - strand at 680.551 kb on + strand at 680.551 kb on + strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.552 kb on - strand at 680.586 kb on - strand at 680.592 kb on + strand at 680.601 kb on - strand at 680.719 kb on + strand, within ABIE40_RS29950 at 680.719 kb on + strand, within ABIE40_RS29950 at 680.720 kb on - strand, within ABIE40_RS29950 at 680.720 kb on - strand, within ABIE40_RS29950 at 680.845 kb on + strand at 680.846 kb on - strand at 680.846 kb on - strand at 680.846 kb on - strand at 680.853 kb on - strand at 680.920 kb on - strand at 680.920 kb on - strand at 680.957 kb on - strand at 681.023 kb on - strand at 681.023 kb on - strand at 681.086 kb on + strand, within ABIE40_RS29955 at 681.087 kb on - strand, within ABIE40_RS29955 at 681.087 kb on - strand, within ABIE40_RS29955 at 681.087 kb on - strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.144 kb on + strand, within ABIE40_RS29955 at 681.145 kb on - strand, within ABIE40_RS29955 at 681.156 kb on + strand, within ABIE40_RS29955 at 681.271 kb on - strand, within ABIE40_RS29955 at 681.378 kb on - strand at 681.410 kb on + strand at 681.410 kb on + strand at 681.411 kb on - strand at 681.465 kb on + strand at 681.466 kb on - strand at 681.466 kb on - strand at 681.466 kb on - strand at 681.490 kb on + strand at 681.490 kb on + strand at 681.491 kb on - strand at 681.491 kb on - strand at 681.491 kb on - strand at 681.491 kb on - strand at 681.624 kb on + strand, within ABIE40_RS29960 at 681.625 kb on - strand, within ABIE40_RS29960 at 681.625 kb on - strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.629 kb on - strand, within ABIE40_RS29960 at 681.629 kb on - strand, within ABIE40_RS29960 at 681.629 kb on - strand, within ABIE40_RS29960 at 681.681 kb on - strand at 681.738 kb on + strand at 681.739 kb on - strand at 681.739 kb on - strand at 681.754 kb on + strand at 681.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 679,663 + ABIE40_RS29940 0.42 -1.4 679,663 + ABIE40_RS29940 0.42 -0.5 679,663 + ABIE40_RS29940 0.42 +0.2 679,663 + ABIE40_RS29940 0.42 -1.0 679,663 + ABIE40_RS29940 0.42 +2.8 679,664 - ABIE40_RS29940 0.42 -0.2 679,664 - ABIE40_RS29940 0.42 +1.1 679,932 + +0.5 679,932 + +0.1 679,933 - +3.2 679,933 - -0.7 679,936 + +1.1 679,936 + +0.7 679,936 + -1.0 679,936 + -0.4 679,936 + -0.6 679,936 + -3.5 679,936 + +0.6 679,937 - +1.2 679,937 - -1.5 679,937 - -0.0 679,937 - -0.4 679,937 - -0.7 679,937 - +1.0 679,937 - +0.2 679,973 + +1.2 679,974 - -2.4 680,168 + +0.5 680,168 + +0.6 680,169 - -0.8 680,169 - -0.8 680,169 - +0.7 680,169 - +2.2 680,169 - -1.0 680,196 + +0.6 680,250 + -0.6 680,250 + -0.4 680,322 + ABIE40_RS29945 0.41 +0.5 680,330 - ABIE40_RS29945 0.45 -0.4 680,352 + ABIE40_RS29945 0.55 +1.0 680,352 + ABIE40_RS29945 0.55 -1.9 680,361 + ABIE40_RS29945 0.59 +1.2 680,443 - -1.9 680,459 + -0.0 680,459 + -0.9 680,459 + +0.4 680,460 - +1.1 680,465 + -1.6 680,465 + +1.3 680,465 + +0.4 680,466 - +0.7 680,466 - +1.2 680,466 - +2.0 680,494 + -2.1 680,495 - +1.0 680,495 - -0.1 680,495 - -1.4 680,495 - -1.1 680,495 - -0.0 680,551 + +1.2 680,551 + +2.2 680,552 - -0.8 680,552 - -1.6 680,552 - -2.0 680,552 - -0.6 680,552 - -1.1 680,552 - +0.2 680,552 - -1.7 680,552 - +0.2 680,552 - -2.7 680,586 - -0.9 680,592 + -2.3 680,601 - -1.4 680,719 + ABIE40_RS29950 0.48 -0.8 680,719 + ABIE40_RS29950 0.48 -1.1 680,720 - ABIE40_RS29950 0.48 -1.5 680,720 - ABIE40_RS29950 0.48 -1.6 680,845 + +0.1 680,846 - +1.8 680,846 - +0.1 680,846 - -1.3 680,853 - -0.6 680,920 - -0.6 680,920 - -0.1 680,957 - +0.1 681,023 - -0.5 681,023 - +0.5 681,086 + ABIE40_RS29955 0.17 -0.2 681,087 - ABIE40_RS29955 0.17 -0.5 681,087 - ABIE40_RS29955 0.17 -0.1 681,087 - ABIE40_RS29955 0.17 -1.5 681,136 + ABIE40_RS29955 0.30 +0.2 681,136 + ABIE40_RS29955 0.30 +0.2 681,136 + ABIE40_RS29955 0.30 -2.0 681,136 + ABIE40_RS29955 0.30 -2.4 681,137 - ABIE40_RS29955 0.30 +0.0 681,137 - ABIE40_RS29955 0.30 -2.1 681,137 - ABIE40_RS29955 0.30 +0.2 681,137 - ABIE40_RS29955 0.30 -0.4 681,144 + ABIE40_RS29955 0.32 +2.8 681,145 - ABIE40_RS29955 0.32 -0.5 681,156 + ABIE40_RS29955 0.35 -1.3 681,271 - ABIE40_RS29955 0.65 +1.7 681,378 - -0.8 681,410 + -0.1 681,410 + -0.8 681,411 - -2.3 681,465 + +0.2 681,466 - -0.2 681,466 - +0.0 681,466 - -0.4 681,490 + +2.2 681,490 + -1.0 681,491 - +0.7 681,491 - -0.1 681,491 - +1.4 681,491 - +1.9 681,624 + ABIE40_RS29960 0.68 +1.7 681,625 - ABIE40_RS29960 0.69 -0.2 681,625 - ABIE40_RS29960 0.69 +0.6 681,628 + ABIE40_RS29960 0.70 -1.1 681,628 + ABIE40_RS29960 0.70 +0.9 681,628 + ABIE40_RS29960 0.70 -1.0 681,628 + ABIE40_RS29960 0.70 -1.3 681,629 - ABIE40_RS29960 0.71 +0.2 681,629 - ABIE40_RS29960 0.71 +0.6 681,629 - ABIE40_RS29960 0.71 -1.5 681,681 - -0.3 681,738 + -1.0 681,739 - -1.3 681,739 - +1.7 681,754 + -1.1 681,755 - -0.6
Or see this region's nucleotide sequence