Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29130

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29125 and ABIE40_RS29130 are separated by 4 nucleotides ABIE40_RS29125: ABIE40_RS29125 - plasmid partitioning protein RepB, at 524,552 to 525,553 _RS29125 ABIE40_RS29130: ABIE40_RS29130 - plasmid partitioning protein RepA, at 525,558 to 526,751 _RS29130 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1 2 3at 527.159 kb on + strandat 527.160 kb on - strandat 527.347 kb on + strandat 527.347 kb on + strandat 527.449 kb on + strandat 527.450 kb on + strandat 527.450 kb on + strandat 527.450 kb on + strandat 527.450 kb on + strandat 527.451 kb on - strandat 527.493 kb on + strandat 527.493 kb on + strandat 527.493 kb on + strandat 527.494 kb on - strandat 527.508 kb on + strandat 527.509 kb on - strandat 527.625 kb on - strandat 527.625 kb on - strandat 527.668 kb on + strandat 527.668 kb on + strandat 527.669 kb on - strandat 527.669 kb on - strandat 527.693 kb on - strandat 527.744 kb on + strandat 527.744 kb on + strandat 527.744 kb on + strandat 527.745 kb on - strandat 527.745 kb on - strandat 527.745 kb on - strandat 527.749 kb on + strandat 527.749 kb on + strandat 527.750 kb on - strandat 527.750 kb on - strandat 527.750 kb on - strandat 527.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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527,159 + +1.2
527,160 - +1.0
527,347 + +3.2
527,347 + +0.6
527,449 + +0.0
527,450 + +2.2
527,450 + -0.2
527,450 + +0.3
527,450 + +1.8
527,451 - -1.5
527,493 + +0.1
527,493 + +0.2
527,493 + +3.3
527,494 - -1.1
527,508 + -0.2
527,509 - +0.6
527,625 - -1.3
527,625 - -2.4
527,668 + -0.3
527,668 + +1.2
527,669 - -0.8
527,669 - -0.2
527,693 - +0.6
527,744 + -1.6
527,744 + -0.5
527,744 + +1.0
527,745 - +2.2
527,745 - -0.5
527,745 - -0.1
527,749 + +1.6
527,749 + -0.8
527,750 - -2.5
527,750 - -1.9
527,750 - +0.3
527,750 - -1.2

Or see this region's nucleotide sequence