Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26880

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS26875 and ABIE40_RS26880 are separated by 566 nucleotidesABIE40_RS26880 and ABIE40_RS26885 are separated by 60 nucleotides ABIE40_RS26875: ABIE40_RS26875 - ferritin-like domain-containing protein, at 96,035 to 96,544 _RS26875 ABIE40_RS26880: ABIE40_RS26880 - hypothetical protein, at 97,111 to 97,518 _RS26880 ABIE40_RS26885: ABIE40_RS26885 - hypothetical protein, at 97,579 to 98,232 _RS26885 Position (kb) 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 96.270 kb on + strand, within ABIE40_RS26875at 96.489 kb on + strand, within ABIE40_RS26875at 96.489 kb on + strand, within ABIE40_RS26875at 96.489 kb on + strand, within ABIE40_RS26875at 96.489 kb on + strand, within ABIE40_RS26875at 96.549 kb on - strandat 96.549 kb on - strandat 96.665 kb on + strandat 96.666 kb on - strandat 96.693 kb on + strandat 96.694 kb on - strandat 96.694 kb on - strandat 96.694 kb on - strandat 96.694 kb on - strandat 96.743 kb on + strandat 96.743 kb on + strandat 96.883 kb on + strandat 97.042 kb on + strandat 97.042 kb on + strandat 97.043 kb on - strandat 97.043 kb on - strandat 97.043 kb on - strandat 97.043 kb on - strandat 97.043 kb on - strandat 97.060 kb on + strandat 97.061 kb on - strandat 97.066 kb on + strandat 97.066 kb on + strandat 97.067 kb on - strandat 97.067 kb on - strandat 97.067 kb on - strandat 97.067 kb on - strandat 97.067 kb on - strandat 97.140 kb on + strandat 97.142 kb on + strandat 97.142 kb on + strandat 97.142 kb on + strandat 97.143 kb on - strandat 97.143 kb on - strandat 97.143 kb on - strandat 97.143 kb on - strandat 97.143 kb on - strandat 97.308 kb on + strand, within ABIE40_RS26880at 97.313 kb on + strand, within ABIE40_RS26880at 97.313 kb on + strand, within ABIE40_RS26880at 97.313 kb on + strand, within ABIE40_RS26880at 97.313 kb on + strand, within ABIE40_RS26880at 97.313 kb on + strand, within ABIE40_RS26880at 97.314 kb on - strand, within ABIE40_RS26880at 97.314 kb on - strand, within ABIE40_RS26880at 97.358 kb on + strand, within ABIE40_RS26880at 97.378 kb on - strand, within ABIE40_RS26880at 97.440 kb on + strand, within ABIE40_RS26880at 97.440 kb on + strand, within ABIE40_RS26880at 97.481 kb on + strandat 97.482 kb on - strandat 97.525 kb on + strandat 97.525 kb on + strandat 97.525 kb on + strandat 97.525 kb on + strandat 97.526 kb on - strandat 97.526 kb on - strandat 97.526 kb on - strandat 97.767 kb on + strand, within ABIE40_RS26885at 97.768 kb on - strand, within ABIE40_RS26885at 97.833 kb on - strand, within ABIE40_RS26885at 97.939 kb on - strand, within ABIE40_RS26885at 97.948 kb on + strand, within ABIE40_RS26885at 97.948 kb on + strand, within ABIE40_RS26885at 97.949 kb on - strand, within ABIE40_RS26885at 97.949 kb on - strand, within ABIE40_RS26885at 97.949 kb on - strand, within ABIE40_RS26885at 97.949 kb on - strand, within ABIE40_RS26885at 97.983 kb on + strand, within ABIE40_RS26885at 97.984 kb on - strand, within ABIE40_RS26885at 97.995 kb on - strand, within ABIE40_RS26885at 97.995 kb on - strand, within ABIE40_RS26885at 98.094 kb on + strand, within ABIE40_RS26885at 98.147 kb on - strand, within ABIE40_RS26885at 98.158 kb on + strand, within ABIE40_RS26885at 98.158 kb on + strand, within ABIE40_RS26885at 98.158 kb on + strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.159 kb on - strand, within ABIE40_RS26885at 98.241 kb on - strandat 98.241 kb on - strandat 98.245 kb on + strandat 98.275 kb on + strandat 98.355 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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96,270 + ABIE40_RS26875 0.46 -3.4
96,489 + ABIE40_RS26875 0.89 -1.6
96,489 + ABIE40_RS26875 0.89 -0.2
96,489 + ABIE40_RS26875 0.89 +2.6
96,489 + ABIE40_RS26875 0.89 +0.6
96,549 - -2.1
96,549 - +1.4
96,665 + +1.4
96,666 - -1.0
96,693 + +0.2
96,694 - +2.4
96,694 - +0.7
96,694 - +0.8
96,694 - -1.0
96,743 + -1.2
96,743 + +2.0
96,883 + -0.2
97,042 + -1.5
97,042 + -0.1
97,043 - -0.9
97,043 - +0.4
97,043 - -0.2
97,043 - +3.0
97,043 - -0.2
97,060 + +4.0
97,061 - -0.4
97,066 + -0.9
97,066 + -3.2
97,067 - +0.1
97,067 - -1.6
97,067 - +1.8
97,067 - +2.4
97,067 - +0.6
97,140 + -1.4
97,142 + +2.4
97,142 + -0.9
97,142 + +0.1
97,143 - +1.1
97,143 - +0.8
97,143 - +4.4
97,143 - +0.2
97,143 - -0.1
97,308 + ABIE40_RS26880 0.48 -0.7
97,313 + ABIE40_RS26880 0.50 -2.6
97,313 + ABIE40_RS26880 0.50 -0.8
97,313 + ABIE40_RS26880 0.50 +0.8
97,313 + ABIE40_RS26880 0.50 -2.0
97,313 + ABIE40_RS26880 0.50 -1.3
97,314 - ABIE40_RS26880 0.50 +1.8
97,314 - ABIE40_RS26880 0.50 -0.6
97,358 + ABIE40_RS26880 0.61 -2.8
97,378 - ABIE40_RS26880 0.65 +2.4
97,440 + ABIE40_RS26880 0.81 -2.3
97,440 + ABIE40_RS26880 0.81 -1.9
97,481 + +1.2
97,482 - -0.5
97,525 + -2.2
97,525 + -1.1
97,525 + -0.4
97,525 + -2.4
97,526 - -0.1
97,526 - -0.9
97,526 - +0.4
97,767 + ABIE40_RS26885 0.29 +2.4
97,768 - ABIE40_RS26885 0.29 -0.7
97,833 - ABIE40_RS26885 0.39 +2.4
97,939 - ABIE40_RS26885 0.55 -0.1
97,948 + ABIE40_RS26885 0.56 +2.4
97,948 + ABIE40_RS26885 0.56 +0.8
97,949 - ABIE40_RS26885 0.57 +0.2
97,949 - ABIE40_RS26885 0.57 -1.4
97,949 - ABIE40_RS26885 0.57 -0.0
97,949 - ABIE40_RS26885 0.57 +0.4
97,983 + ABIE40_RS26885 0.62 +1.4
97,984 - ABIE40_RS26885 0.62 -1.5
97,995 - ABIE40_RS26885 0.64 +1.1
97,995 - ABIE40_RS26885 0.64 +1.6
98,094 + ABIE40_RS26885 0.79 +0.8
98,147 - ABIE40_RS26885 0.87 +0.1
98,158 + ABIE40_RS26885 0.89 +0.1
98,158 + ABIE40_RS26885 0.89 -0.5
98,158 + ABIE40_RS26885 0.89 -0.2
98,159 - ABIE40_RS26885 0.89 -1.4
98,159 - ABIE40_RS26885 0.89 +1.2
98,159 - ABIE40_RS26885 0.89 -2.6
98,159 - ABIE40_RS26885 0.89 -0.8
98,159 - ABIE40_RS26885 0.89 -1.3
98,159 - ABIE40_RS26885 0.89 -0.4
98,159 - ABIE40_RS26885 0.89 +1.8
98,159 - ABIE40_RS26885 0.89 +0.0
98,159 - ABIE40_RS26885 0.89 -1.5
98,159 - ABIE40_RS26885 0.89 +0.2
98,241 - +0.6
98,241 - -1.1
98,245 + +1.4
98,275 + +0.4
98,355 + +0.4

Or see this region's nucleotide sequence