Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23445 and ABIE40_RS23450 are separated by 175 nucleotides ABIE40_RS23450 and ABIE40_RS23455 are separated by 30 nucleotides ABIE40_RS23455 and ABIE40_RS23460 are separated by 135 nucleotides ABIE40_RS23460 and ABIE40_RS23465 are separated by 4 nucleotides
ABIE40_RS23445: ABIE40_RS23445 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 835,416 to 839,117
_RS23445
ABIE40_RS23450: ABIE40_RS23450 - Lrp/AsnC family transcriptional regulator, at 839,293 to 839,778
_RS23450
ABIE40_RS23455: ABIE40_RS23455 - GntR family transcriptional regulator, at 839,809 to 840,492
_RS23455
ABIE40_RS23460: ABIE40_RS23460 - arginase family protein, at 840,628 to 841,470
_RS23460
ABIE40_RS23465: ABIE40_RS23465 - FMN-binding negative transcriptional regulator, at 841,475 to 842,104
_RS23465
Position (kb) 839
840
841 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 838.840 kb on - strand at 838.847 kb on - strand at 838.939 kb on - strand at 839.207 kb on + strand at 839.207 kb on + strand at 839.207 kb on + strand at 839.207 kb on + strand at 839.208 kb on - strand at 839.266 kb on + strand at 839.271 kb on + strand at 839.272 kb on - strand at 839.415 kb on + strand, within ABIE40_RS23450 at 839.415 kb on + strand, within ABIE40_RS23450 at 839.415 kb on + strand, within ABIE40_RS23450 at 839.415 kb on + strand, within ABIE40_RS23450 at 839.416 kb on - strand, within ABIE40_RS23450 at 839.416 kb on - strand, within ABIE40_RS23450 at 839.416 kb on - strand, within ABIE40_RS23450 at 839.416 kb on - strand, within ABIE40_RS23450 at 839.458 kb on + strand, within ABIE40_RS23450 at 839.458 kb on + strand, within ABIE40_RS23450 at 839.458 kb on + strand, within ABIE40_RS23450 at 839.458 kb on + strand, within ABIE40_RS23450 at 839.458 kb on + strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.459 kb on - strand, within ABIE40_RS23450 at 839.461 kb on - strand, within ABIE40_RS23450 at 839.461 kb on - strand, within ABIE40_RS23450 at 839.461 kb on - strand, within ABIE40_RS23450 at 839.461 kb on - strand, within ABIE40_RS23450 at 839.632 kb on + strand, within ABIE40_RS23450 at 839.633 kb on - strand, within ABIE40_RS23450 at 839.633 kb on - strand, within ABIE40_RS23450 at 839.633 kb on - strand, within ABIE40_RS23450 at 839.633 kb on - strand, within ABIE40_RS23450 at 839.668 kb on + strand, within ABIE40_RS23450 at 839.668 kb on + strand, within ABIE40_RS23450 at 840.008 kb on + strand, within ABIE40_RS23455 at 840.008 kb on + strand, within ABIE40_RS23455 at 840.008 kb on + strand, within ABIE40_RS23455 at 840.008 kb on + strand, within ABIE40_RS23455 at 840.008 kb on + strand, within ABIE40_RS23455 at 840.008 kb on + strand, within ABIE40_RS23455 at 840.009 kb on - strand, within ABIE40_RS23455 at 840.009 kb on - strand, within ABIE40_RS23455 at 840.009 kb on - strand, within ABIE40_RS23455 at 840.032 kb on - strand, within ABIE40_RS23455 at 840.057 kb on - strand, within ABIE40_RS23455 at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.500 kb on + strand at 840.501 kb on - strand at 840.501 kb on - strand at 840.501 kb on - strand at 840.535 kb on + strand at 840.535 kb on + strand at 840.614 kb on + strand at 840.642 kb on + strand at 841.015 kb on + strand, within ABIE40_RS23460 at 841.015 kb on + strand, within ABIE40_RS23460 at 841.016 kb on - strand, within ABIE40_RS23460 at 841.060 kb on - strand, within ABIE40_RS23460 at 841.233 kb on + strand, within ABIE40_RS23460 at 841.233 kb on + strand, within ABIE40_RS23460 at 841.234 kb on - strand, within ABIE40_RS23460 at 841.276 kb on + strand, within ABIE40_RS23460 at 841.276 kb on + strand, within ABIE40_RS23460 at 841.277 kb on - strand, within ABIE40_RS23460 at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.478 kb on + strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand at 841.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 838,840 - -0.5 838,847 - -1.8 838,939 - +0.3 839,207 + -1.4 839,207 + -0.7 839,207 + +0.1 839,207 + -1.4 839,208 - -0.5 839,266 + -0.9 839,271 + -0.4 839,272 - -1.2 839,415 + ABIE40_RS23450 0.25 -0.5 839,415 + ABIE40_RS23450 0.25 -0.2 839,415 + ABIE40_RS23450 0.25 -0.7 839,415 + ABIE40_RS23450 0.25 +1.6 839,416 - ABIE40_RS23450 0.25 -0.2 839,416 - ABIE40_RS23450 0.25 -1.9 839,416 - ABIE40_RS23450 0.25 +0.5 839,416 - ABIE40_RS23450 0.25 +0.8 839,458 + ABIE40_RS23450 0.34 +0.3 839,458 + ABIE40_RS23450 0.34 +0.3 839,458 + ABIE40_RS23450 0.34 -0.5 839,458 + ABIE40_RS23450 0.34 -1.4 839,458 + ABIE40_RS23450 0.34 -3.3 839,459 - ABIE40_RS23450 0.34 -0.8 839,459 - ABIE40_RS23450 0.34 +0.1 839,459 - ABIE40_RS23450 0.34 +1.1 839,459 - ABIE40_RS23450 0.34 -1.4 839,459 - ABIE40_RS23450 0.34 +0.1 839,459 - ABIE40_RS23450 0.34 -0.0 839,459 - ABIE40_RS23450 0.34 -0.2 839,461 - ABIE40_RS23450 0.35 -1.7 839,461 - ABIE40_RS23450 0.35 -0.7 839,461 - ABIE40_RS23450 0.35 +0.1 839,461 - ABIE40_RS23450 0.35 +1.1 839,632 + ABIE40_RS23450 0.70 -0.2 839,633 - ABIE40_RS23450 0.70 -0.2 839,633 - ABIE40_RS23450 0.70 -0.7 839,633 - ABIE40_RS23450 0.70 +1.1 839,633 - ABIE40_RS23450 0.70 -1.4 839,668 + ABIE40_RS23450 0.77 -0.3 839,668 + ABIE40_RS23450 0.77 -2.1 840,008 + ABIE40_RS23455 0.29 -0.4 840,008 + ABIE40_RS23455 0.29 -3.3 840,008 + ABIE40_RS23455 0.29 -1.8 840,008 + ABIE40_RS23455 0.29 +0.1 840,008 + ABIE40_RS23455 0.29 -2.2 840,008 + ABIE40_RS23455 0.29 -1.1 840,009 - ABIE40_RS23455 0.29 -2.6 840,009 - ABIE40_RS23455 0.29 -2.3 840,009 - ABIE40_RS23455 0.29 -0.5 840,032 - ABIE40_RS23455 0.33 -0.4 840,057 - ABIE40_RS23455 0.36 -1.1 840,500 + +0.3 840,500 + -1.3 840,500 + -2.0 840,500 + +0.5 840,500 + -0.9 840,500 + -4.2 840,500 + -0.5 840,500 + -1.7 840,500 + -1.4 840,500 + +0.9 840,500 + -0.7 840,501 - +0.0 840,501 - +2.1 840,501 - -0.5 840,535 + +1.1 840,535 + -1.0 840,614 + -0.1 840,642 + -3.1 841,015 + ABIE40_RS23460 0.46 +0.5 841,015 + ABIE40_RS23460 0.46 +0.4 841,016 - ABIE40_RS23460 0.46 -0.8 841,060 - ABIE40_RS23460 0.51 -1.0 841,233 + ABIE40_RS23460 0.72 -0.6 841,233 + ABIE40_RS23460 0.72 -0.1 841,234 - ABIE40_RS23460 0.72 -0.5 841,276 + ABIE40_RS23460 0.77 -0.6 841,276 + ABIE40_RS23460 0.77 +0.8 841,277 - ABIE40_RS23460 0.77 +1.1 841,478 + -0.8 841,478 + -0.9 841,478 + +0.4 841,478 + -1.3 841,478 + -0.8 841,478 + +1.8 841,478 + -0.1 841,478 + +0.1 841,478 + -1.3 841,478 + +0.3 841,478 + -0.3 841,478 + -0.5 841,478 + -0.3 841,478 + +0.1 841,478 + +0.9 841,478 + +0.2 841,478 + -0.2 841,479 - +0.8 841,479 - -0.9 841,479 - -0.2 841,479 - +1.1 841,479 - -1.8 841,479 - -2.3 841,479 - +1.2 841,479 - +0.1 841,479 - +1.2 841,479 - -0.2 841,479 - -2.8 841,479 - -0.3 841,479 - +2.3 841,479 - +0.6 841,479 - +0.5 841,479 - -0.7 841,479 - +0.3 841,479 - +0.0
Or see this region's nucleotide sequence