Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03920 and ABIE40_RS03925 are separated by 112 nucleotides ABIE40_RS03925 and ABIE40_RS03930 overlap by 4 nucleotides ABIE40_RS03930 and ABIE40_RS03935 are separated by 5 nucleotides ABIE40_RS03935 and ABIE40_RS03940 are separated by 2 nucleotides
ABIE40_RS03920: ABIE40_RS03920 - pirin family protein, at 780,125 to 781,048
_RS03920
ABIE40_RS03925: ABIE40_RS03925 - DUF6516 family protein, at 781,161 to 781,451
_RS03925
ABIE40_RS03930: ABIE40_RS03930 - hypothetical protein, at 781,448 to 781,798
_RS03930
ABIE40_RS03935: ABIE40_RS03935 - exodeoxyribonuclease VII small subunit, at 781,804 to 782,055
_RS03935
ABIE40_RS03940: ABIE40_RS03940 - histone deacetylase family protein, at 782,058 to 782,993
_RS03940
Position (kb) 781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 780.824 kb on - strand, within ABIE40_RS03920 at 780.958 kb on + strand at 781.081 kb on + strand at 781.081 kb on + strand at 781.081 kb on + strand at 781.151 kb on + strand at 781.151 kb on + strand at 781.152 kb on - strand at 781.152 kb on - strand at 781.275 kb on + strand, within ABIE40_RS03925 at 781.275 kb on + strand, within ABIE40_RS03925 at 781.276 kb on - strand, within ABIE40_RS03925 at 781.288 kb on - strand, within ABIE40_RS03925 at 781.317 kb on + strand, within ABIE40_RS03925 at 781.318 kb on - strand, within ABIE40_RS03925 at 781.353 kb on + strand, within ABIE40_RS03925 at 781.354 kb on - strand, within ABIE40_RS03925 at 781.374 kb on + strand, within ABIE40_RS03925 at 781.374 kb on + strand, within ABIE40_RS03925 at 781.374 kb on + strand, within ABIE40_RS03925 at 781.374 kb on + strand, within ABIE40_RS03925 at 781.374 kb on + strand, within ABIE40_RS03925 at 781.375 kb on - strand, within ABIE40_RS03925 at 781.375 kb on - strand, within ABIE40_RS03925 at 781.766 kb on + strand at 781.766 kb on + strand at 781.797 kb on - strand at 781.797 kb on - strand at 781.797 kb on - strand at 781.931 kb on + strand, within ABIE40_RS03935 at 781.932 kb on - strand, within ABIE40_RS03935 at 781.932 kb on - strand, within ABIE40_RS03935 at 781.932 kb on - strand, within ABIE40_RS03935 at 781.932 kb on - strand, within ABIE40_RS03935 at 781.932 kb on - strand, within ABIE40_RS03935 at 781.932 kb on - strand, within ABIE40_RS03935 at 782.055 kb on + strand at 782.055 kb on + strand at 782.055 kb on + strand at 782.056 kb on - strand at 782.085 kb on + strand at 782.086 kb on - strand at 782.086 kb on - strand at 782.086 kb on - strand at 782.086 kb on - strand at 782.086 kb on - strand at 782.086 kb on - strand at 782.120 kb on - strand at 782.170 kb on - strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.737 kb on + strand, within ABIE40_RS03940 at 782.738 kb on - strand, within ABIE40_RS03940 at 782.738 kb on - strand, within ABIE40_RS03940 at 782.738 kb on - strand, within ABIE40_RS03940 at 782.738 kb on - strand, within ABIE40_RS03940 at 782.738 kb on - strand, within ABIE40_RS03940 at 782.738 kb on - strand, within ABIE40_RS03940 at 782.977 kb on + strand at 782.978 kb on - strand at 783.001 kb on + strand at 783.001 kb on + strand at 783.001 kb on + strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.002 kb on - strand at 783.005 kb on + strand at 783.005 kb on + strand at 783.006 kb on - strand at 783.006 kb on - strand at 783.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 780,824 - ABIE40_RS03920 0.76 +0.4 780,958 + +0.2 781,081 + +0.3 781,081 + +0.4 781,081 + +0.0 781,151 + -1.1 781,151 + +0.6 781,152 - -2.6 781,152 - +0.4 781,275 + ABIE40_RS03925 0.39 -0.2 781,275 + ABIE40_RS03925 0.39 +1.2 781,276 - ABIE40_RS03925 0.40 -0.9 781,288 - ABIE40_RS03925 0.44 -0.1 781,317 + ABIE40_RS03925 0.54 -1.2 781,318 - ABIE40_RS03925 0.54 -1.6 781,353 + ABIE40_RS03925 0.66 +1.5 781,354 - ABIE40_RS03925 0.66 +0.4 781,374 + ABIE40_RS03925 0.73 -0.6 781,374 + ABIE40_RS03925 0.73 +0.5 781,374 + ABIE40_RS03925 0.73 -0.8 781,374 + ABIE40_RS03925 0.73 -2.0 781,374 + ABIE40_RS03925 0.73 +0.1 781,375 - ABIE40_RS03925 0.74 -0.1 781,375 - ABIE40_RS03925 0.74 -0.6 781,766 + -0.3 781,766 + +1.1 781,797 - -0.5 781,797 - +0.6 781,797 - +2.0 781,931 + ABIE40_RS03935 0.50 -0.9 781,932 - ABIE40_RS03935 0.51 -0.0 781,932 - ABIE40_RS03935 0.51 -1.0 781,932 - ABIE40_RS03935 0.51 -1.3 781,932 - ABIE40_RS03935 0.51 -1.4 781,932 - ABIE40_RS03935 0.51 -0.0 781,932 - ABIE40_RS03935 0.51 -2.1 782,055 + +1.6 782,055 + -0.5 782,055 + -1.5 782,056 - -0.8 782,085 + -1.1 782,086 - +0.4 782,086 - +1.0 782,086 - -3.4 782,086 - +0.6 782,086 - -3.2 782,086 - +0.2 782,120 - -0.2 782,170 - ABIE40_RS03940 0.12 -1.2 782,737 + ABIE40_RS03940 0.73 +0.6 782,737 + ABIE40_RS03940 0.73 +0.0 782,737 + ABIE40_RS03940 0.73 +0.1 782,737 + ABIE40_RS03940 0.73 -0.0 782,737 + ABIE40_RS03940 0.73 +1.0 782,737 + ABIE40_RS03940 0.73 +0.4 782,737 + ABIE40_RS03940 0.73 +0.4 782,737 + ABIE40_RS03940 0.73 +0.5 782,738 - ABIE40_RS03940 0.73 +0.2 782,738 - ABIE40_RS03940 0.73 +0.0 782,738 - ABIE40_RS03940 0.73 +0.0 782,738 - ABIE40_RS03940 0.73 +0.1 782,738 - ABIE40_RS03940 0.73 -0.0 782,738 - ABIE40_RS03940 0.73 +1.1 782,977 + +3.6 782,978 - +0.2 783,001 + -0.7 783,001 + +0.1 783,001 + -0.7 783,002 - -0.3 783,002 - +0.0 783,002 - -1.1 783,002 - -0.6 783,002 - -0.3 783,002 - -1.3 783,002 - -0.0 783,005 + -2.3 783,005 + -2.0 783,006 - +1.6 783,006 - +1.4 783,006 - +0.5
Or see this region's nucleotide sequence