Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03730

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03725 and ABIE40_RS03730 are separated by 31 nucleotidesABIE40_RS03730 and ABIE40_RS03735 are separated by 2 nucleotidesABIE40_RS03735 and ABIE40_RS03740 are separated by 279 nucleotides ABIE40_RS03725: ABIE40_RS03725 - monocarboxylate uptake permease MctP, at 734,845 to 736,320 _RS03725 ABIE40_RS03730: ABIE40_RS03730 - RES family NAD+ phosphorylase, at 736,352 to 736,786 _RS03730 ABIE40_RS03735: ABIE40_RS03735 - antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein, at 736,789 to 737,199 _RS03735 ABIE40_RS03740: ABIE40_RS03740 - isoleucine--tRNA ligase, at 737,479 to 740,379 _RS03740 Position (kb) 736 737Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 735.370 kb on + strand, within ABIE40_RS03725at 735.370 kb on + strand, within ABIE40_RS03725at 735.370 kb on + strand, within ABIE40_RS03725at 735.371 kb on - strand, within ABIE40_RS03725at 735.371 kb on - strand, within ABIE40_RS03725at 735.371 kb on - strand, within ABIE40_RS03725at 735.376 kb on + strand, within ABIE40_RS03725at 735.377 kb on - strand, within ABIE40_RS03725at 735.377 kb on - strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.433 kb on + strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.434 kb on - strand, within ABIE40_RS03725at 735.562 kb on + strand, within ABIE40_RS03725at 735.562 kb on + strand, within ABIE40_RS03725at 735.562 kb on + strand, within ABIE40_RS03725at 735.563 kb on + strand, within ABIE40_RS03725at 735.563 kb on - strand, within ABIE40_RS03725at 735.563 kb on - strand, within ABIE40_RS03725at 735.563 kb on - strand, within ABIE40_RS03725at 735.571 kb on + strand, within ABIE40_RS03725at 735.571 kb on + strand, within ABIE40_RS03725at 735.571 kb on + strand, within ABIE40_RS03725at 735.613 kb on + strand, within ABIE40_RS03725at 735.613 kb on + strand, within ABIE40_RS03725at 735.613 kb on + strand, within ABIE40_RS03725at 735.613 kb on + strand, within ABIE40_RS03725at 735.613 kb on + strand, within ABIE40_RS03725at 735.614 kb on - strand, within ABIE40_RS03725at 735.614 kb on - strand, within ABIE40_RS03725at 735.614 kb on - strand, within ABIE40_RS03725at 735.691 kb on + strand, within ABIE40_RS03725at 735.691 kb on + strand, within ABIE40_RS03725at 735.691 kb on + strand, within ABIE40_RS03725at 735.691 kb on + strand, within ABIE40_RS03725at 735.692 kb on - strand, within ABIE40_RS03725at 735.693 kb on + strand, within ABIE40_RS03725at 735.693 kb on + strand, within ABIE40_RS03725at 735.693 kb on + strand, within ABIE40_RS03725at 735.694 kb on - strand, within ABIE40_RS03725at 735.727 kb on + strand, within ABIE40_RS03725at 735.727 kb on + strand, within ABIE40_RS03725at 735.728 kb on - strand, within ABIE40_RS03725at 735.728 kb on - strand, within ABIE40_RS03725at 735.728 kb on - strand, within ABIE40_RS03725at 735.729 kb on + strand, within ABIE40_RS03725at 735.730 kb on - strand, within ABIE40_RS03725at 735.730 kb on - strand, within ABIE40_RS03725at 735.916 kb on + strand, within ABIE40_RS03725at 735.916 kb on + strand, within ABIE40_RS03725at 735.917 kb on - strand, within ABIE40_RS03725at 735.917 kb on - strand, within ABIE40_RS03725at 735.917 kb on - strand, within ABIE40_RS03725at 736.096 kb on + strand, within ABIE40_RS03725at 736.096 kb on + strand, within ABIE40_RS03725at 736.097 kb on - strand, within ABIE40_RS03725at 736.097 kb on - strand, within ABIE40_RS03725at 736.097 kb on - strand, within ABIE40_RS03725at 736.231 kb on + strandat 736.231 kb on + strandat 736.231 kb on + strandat 736.231 kb on + strandat 736.231 kb on + strandat 736.231 kb on + strandat 736.231 kb on + strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.232 kb on - strandat 736.260 kb on + strandat 736.261 kb on - strandat 736.261 kb on - strandat 736.354 kb on - strandat 736.546 kb on + strand, within ABIE40_RS03730at 736.614 kb on + strand, within ABIE40_RS03730at 736.614 kb on + strand, within ABIE40_RS03730at 736.614 kb on + strand, within ABIE40_RS03730at 736.615 kb on - strand, within ABIE40_RS03730at 736.615 kb on - strand, within ABIE40_RS03730at 736.690 kb on - strand, within ABIE40_RS03730at 736.690 kb on - strand, within ABIE40_RS03730at 736.690 kb on - strand, within ABIE40_RS03730at 736.782 kb on + strandat 736.782 kb on + strandat 736.782 kb on + strandat 736.783 kb on - strandat 736.783 kb on - strandat 736.793 kb on - strandat 736.795 kb on - strandat 736.795 kb on - strandat 736.796 kb on + strandat 736.796 kb on + strandat 736.796 kb on + strandat 736.796 kb on + strandat 736.796 kb on + strandat 736.797 kb on - strandat 736.831 kb on + strand, within ABIE40_RS03735at 736.902 kb on + strand, within ABIE40_RS03735at 736.971 kb on + strand, within ABIE40_RS03735at 736.972 kb on - strand, within ABIE40_RS03735at 737.060 kb on + strand, within ABIE40_RS03735at 737.061 kb on - strand, within ABIE40_RS03735at 737.230 kb on - strandat 737.296 kb on + strandat 737.315 kb on + strandat 737.315 kb on + strandat 737.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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735,370 + ABIE40_RS03725 0.36 -0.1
735,370 + ABIE40_RS03725 0.36 -2.4
735,370 + ABIE40_RS03725 0.36 -0.9
735,371 - ABIE40_RS03725 0.36 +3.0
735,371 - ABIE40_RS03725 0.36 -0.8
735,371 - ABIE40_RS03725 0.36 +0.8
735,376 + ABIE40_RS03725 0.36 -0.1
735,377 - ABIE40_RS03725 0.36 +0.3
735,377 - ABIE40_RS03725 0.36 +0.3
735,433 + ABIE40_RS03725 0.40 -2.0
735,433 + ABIE40_RS03725 0.40 -0.5
735,433 + ABIE40_RS03725 0.40 -0.3
735,433 + ABIE40_RS03725 0.40 -1.5
735,433 + ABIE40_RS03725 0.40 -1.1
735,433 + ABIE40_RS03725 0.40 -1.9
735,433 + ABIE40_RS03725 0.40 -2.4
735,433 + ABIE40_RS03725 0.40 -0.2
735,433 + ABIE40_RS03725 0.40 -1.4
735,433 + ABIE40_RS03725 0.40 -0.3
735,433 + ABIE40_RS03725 0.40 -0.0
735,433 + ABIE40_RS03725 0.40 -0.4
735,434 - ABIE40_RS03725 0.40 -0.3
735,434 - ABIE40_RS03725 0.40 +0.2
735,434 - ABIE40_RS03725 0.40 -1.3
735,434 - ABIE40_RS03725 0.40 -0.4
735,434 - ABIE40_RS03725 0.40 -0.8
735,434 - ABIE40_RS03725 0.40 -2.7
735,434 - ABIE40_RS03725 0.40 -1.9
735,434 - ABIE40_RS03725 0.40 -1.4
735,434 - ABIE40_RS03725 0.40 -0.7
735,434 - ABIE40_RS03725 0.40 -0.6
735,562 + ABIE40_RS03725 0.49 +0.4
735,562 + ABIE40_RS03725 0.49 -0.8
735,562 + ABIE40_RS03725 0.49 -0.9
735,563 + ABIE40_RS03725 0.49 -3.1
735,563 - ABIE40_RS03725 0.49 -0.0
735,563 - ABIE40_RS03725 0.49 -0.1
735,563 - ABIE40_RS03725 0.49 +0.2
735,571 + ABIE40_RS03725 0.49 -0.5
735,571 + ABIE40_RS03725 0.49 -0.8
735,571 + ABIE40_RS03725 0.49 -1.5
735,613 + ABIE40_RS03725 0.52 -0.6
735,613 + ABIE40_RS03725 0.52 -2.1
735,613 + ABIE40_RS03725 0.52 -1.1
735,613 + ABIE40_RS03725 0.52 +1.4
735,613 + ABIE40_RS03725 0.52 -1.9
735,614 - ABIE40_RS03725 0.52 +0.1
735,614 - ABIE40_RS03725 0.52 +0.8
735,614 - ABIE40_RS03725 0.52 -0.7
735,691 + ABIE40_RS03725 0.57 -1.4
735,691 + ABIE40_RS03725 0.57 -0.5
735,691 + ABIE40_RS03725 0.57 +0.0
735,691 + ABIE40_RS03725 0.57 +0.3
735,692 - ABIE40_RS03725 0.57 -0.0
735,693 + ABIE40_RS03725 0.57 +0.5
735,693 + ABIE40_RS03725 0.57 +0.8
735,693 + ABIE40_RS03725 0.57 +2.0
735,694 - ABIE40_RS03725 0.58 -1.8
735,727 + ABIE40_RS03725 0.60 -3.9
735,727 + ABIE40_RS03725 0.60 -0.3
735,728 - ABIE40_RS03725 0.60 -0.1
735,728 - ABIE40_RS03725 0.60 +1.5
735,728 - ABIE40_RS03725 0.60 +0.1
735,729 + ABIE40_RS03725 0.60 -2.6
735,730 - ABIE40_RS03725 0.60 -0.2
735,730 - ABIE40_RS03725 0.60 +0.8
735,916 + ABIE40_RS03725 0.73 -0.6
735,916 + ABIE40_RS03725 0.73 +3.0
735,917 - ABIE40_RS03725 0.73 +0.6
735,917 - ABIE40_RS03725 0.73 -0.6
735,917 - ABIE40_RS03725 0.73 -0.4
736,096 + ABIE40_RS03725 0.85 +0.7
736,096 + ABIE40_RS03725 0.85 +0.6
736,097 - ABIE40_RS03725 0.85 -0.6
736,097 - ABIE40_RS03725 0.85 -1.5
736,097 - ABIE40_RS03725 0.85 -1.2
736,231 + +0.1
736,231 + +0.5
736,231 + +0.6
736,231 + +1.3
736,231 + -0.8
736,231 + -0.8
736,231 + +0.2
736,232 - -0.4
736,232 - +0.5
736,232 - -1.2
736,232 - -1.2
736,232 - +0.1
736,232 - +0.1
736,232 - +0.0
736,232 - -0.4
736,232 - -0.6
736,232 - +0.6
736,232 - -1.6
736,232 - +1.7
736,232 - -0.5
736,232 - +0.1
736,260 + -0.1
736,261 - -2.0
736,261 - -1.9
736,354 - -0.1
736,546 + ABIE40_RS03730 0.45 -1.7
736,614 + ABIE40_RS03730 0.60 -0.8
736,614 + ABIE40_RS03730 0.60 -0.6
736,614 + ABIE40_RS03730 0.60 -0.4
736,615 - ABIE40_RS03730 0.60 +0.4
736,615 - ABIE40_RS03730 0.60 -0.8
736,690 - ABIE40_RS03730 0.78 -3.0
736,690 - ABIE40_RS03730 0.78 -0.6
736,690 - ABIE40_RS03730 0.78 -2.3
736,782 + -0.6
736,782 + +0.4
736,782 + -0.5
736,783 - -0.1
736,783 - +1.6
736,793 - +1.6
736,795 - +0.5
736,795 - -0.7
736,796 + -2.6
736,796 + -0.8
736,796 + -1.3
736,796 + -1.2
736,796 + -0.4
736,797 - +0.1
736,831 + ABIE40_RS03735 0.10 +1.0
736,902 + ABIE40_RS03735 0.27 +0.7
736,971 + ABIE40_RS03735 0.44 -1.0
736,972 - ABIE40_RS03735 0.45 +0.1
737,060 + ABIE40_RS03735 0.66 -0.7
737,061 - ABIE40_RS03735 0.66 -0.8
737,230 - -0.2
737,296 + +0.4
737,315 + +0.5
737,315 + +3.7
737,338 + +1.2

Or see this region's nucleotide sequence