Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02575

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02560 and ABIE40_RS02565 overlap by 11 nucleotidesABIE40_RS02565 and ABIE40_RS02570 are separated by 189 nucleotidesABIE40_RS02570 and ABIE40_RS02575 are separated by 60 nucleotidesABIE40_RS02575 and ABIE40_RS02580 are separated by 156 nucleotides ABIE40_RS02560: ABIE40_RS02560 - DMT family transporter, at 506,600 to 507,499 _RS02560 ABIE40_RS02565: ABIE40_RS02565 - VOC family protein, at 507,489 to 507,965 _RS02565 ABIE40_RS02570: ABIE40_RS02570 - hypothetical protein, at 508,155 to 508,343 _RS02570 ABIE40_RS02575: ABIE40_RS02575 - hypothetical protein, at 508,404 to 508,706 _RS02575 ABIE40_RS02580: ABIE40_RS02580 - acyl-CoA dehydrogenase C-terminal domain-containing protein, at 508,863 to 510,659 _RS02580 Position (kb) 508 509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 507.510 kb on + strandat 507.511 kb on - strandat 507.511 kb on - strandat 507.511 kb on - strandat 507.511 kb on - strandat 507.697 kb on - strand, within ABIE40_RS02565at 507.787 kb on + strand, within ABIE40_RS02565at 507.787 kb on + strand, within ABIE40_RS02565at 507.787 kb on + strand, within ABIE40_RS02565at 507.788 kb on - strand, within ABIE40_RS02565at 507.788 kb on - strand, within ABIE40_RS02565at 507.788 kb on - strand, within ABIE40_RS02565at 507.788 kb on - strand, within ABIE40_RS02565at 507.904 kb on + strand, within ABIE40_RS02565at 507.905 kb on - strand, within ABIE40_RS02565at 507.905 kb on - strand, within ABIE40_RS02565at 507.905 kb on - strand, within ABIE40_RS02565at 507.905 kb on - strand, within ABIE40_RS02565at 507.905 kb on - strand, within ABIE40_RS02565at 508.060 kb on + strandat 508.113 kb on - strandat 508.342 kb on - strandat 508.342 kb on - strandat 508.347 kb on + strandat 508.347 kb on + strandat 508.347 kb on + strandat 508.347 kb on + strandat 508.347 kb on + strandat 508.348 kb on - strandat 508.360 kb on + strandat 508.393 kb on + strandat 508.394 kb on + strandat 508.394 kb on + strandat 508.394 kb on + strandat 508.394 kb on + strandat 508.394 kb on + strandat 508.394 kb on + strandat 508.395 kb on - strandat 508.395 kb on - strandat 508.395 kb on - strandat 508.395 kb on - strandat 508.433 kb on + strandat 508.433 kb on + strandat 508.434 kb on - strandat 508.611 kb on + strand, within ABIE40_RS02575at 508.611 kb on + strand, within ABIE40_RS02575at 508.785 kb on + strandat 508.785 kb on + strandat 508.807 kb on - strandat 508.807 kb on - strandat 508.807 kb on - strandat 508.873 kb on - strandat 508.873 kb on - strandat 508.873 kb on - strandat 508.874 kb on + strandat 508.874 kb on + strandat 508.875 kb on - strandat 508.875 kb on - strandat 508.932 kb on + strandat 508.932 kb on + strandat 508.933 kb on - strandat 508.933 kb on - strandat 509.034 kb on + strandat 509.034 kb on + strandat 509.034 kb on + strandat 509.034 kb on + strandat 509.034 kb on + strandat 509.034 kb on + strandat 509.035 kb on - strandat 509.035 kb on - strandat 509.035 kb on - strandat 509.109 kb on + strand, within ABIE40_RS02580at 509.109 kb on + strand, within ABIE40_RS02580at 509.109 kb on + strand, within ABIE40_RS02580at 509.109 kb on + strand, within ABIE40_RS02580at 509.109 kb on + strand, within ABIE40_RS02580at 509.109 kb on + strand, within ABIE40_RS02580at 509.110 kb on - strand, within ABIE40_RS02580at 509.110 kb on - strand, within ABIE40_RS02580at 509.110 kb on - strand, within ABIE40_RS02580at 509.118 kb on + strand, within ABIE40_RS02580at 509.119 kb on - strand, within ABIE40_RS02580at 509.119 kb on - strand, within ABIE40_RS02580at 509.181 kb on + strand, within ABIE40_RS02580at 509.182 kb on - strand, within ABIE40_RS02580at 509.182 kb on - strand, within ABIE40_RS02580at 509.182 kb on - strand, within ABIE40_RS02580at 509.182 kb on - strand, within ABIE40_RS02580at 509.209 kb on - strand, within ABIE40_RS02580at 509.241 kb on + strand, within ABIE40_RS02580at 509.241 kb on + strand, within ABIE40_RS02580at 509.241 kb on + strand, within ABIE40_RS02580at 509.242 kb on - strand, within ABIE40_RS02580at 509.242 kb on - strand, within ABIE40_RS02580at 509.242 kb on - strand, within ABIE40_RS02580at 509.242 kb on - strand, within ABIE40_RS02580at 509.242 kb on - strand, within ABIE40_RS02580at 509.310 kb on + strand, within ABIE40_RS02580at 509.311 kb on - strand, within ABIE40_RS02580at 509.311 kb on - strand, within ABIE40_RS02580at 509.311 kb on - strand, within ABIE40_RS02580at 509.311 kb on - strand, within ABIE40_RS02580at 509.311 kb on - strand, within ABIE40_RS02580at 509.311 kb on - strand, within ABIE40_RS02580at 509.427 kb on + strand, within ABIE40_RS02580at 509.427 kb on + strand, within ABIE40_RS02580at 509.428 kb on - strand, within ABIE40_RS02580at 509.428 kb on - strand, within ABIE40_RS02580at 509.428 kb on - strand, within ABIE40_RS02580at 509.428 kb on - strand, within ABIE40_RS02580at 509.486 kb on + strand, within ABIE40_RS02580at 509.487 kb on - strand, within ABIE40_RS02580at 509.531 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.670 kb on + strand, within ABIE40_RS02580at 509.671 kb on - strand, within ABIE40_RS02580at 509.671 kb on - strand, within ABIE40_RS02580at 509.671 kb on - strand, within ABIE40_RS02580at 509.671 kb on - strand, within ABIE40_RS02580at 509.671 kb on - strand, within ABIE40_RS02580at 509.671 kb on - strand, within ABIE40_RS02580at 509.689 kb on - strand, within ABIE40_RS02580at 509.689 kb on - strand, within ABIE40_RS02580

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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507,510 + -1.6
507,511 - +0.1
507,511 - -0.7
507,511 - +1.9
507,511 - -1.1
507,697 - ABIE40_RS02565 0.44 -0.1
507,787 + ABIE40_RS02565 0.62 -1.2
507,787 + ABIE40_RS02565 0.62 -1.1
507,787 + ABIE40_RS02565 0.62 -2.1
507,788 - ABIE40_RS02565 0.63 +0.3
507,788 - ABIE40_RS02565 0.63 -0.5
507,788 - ABIE40_RS02565 0.63 -1.7
507,788 - ABIE40_RS02565 0.63 +0.6
507,904 + ABIE40_RS02565 0.87 +0.6
507,905 - ABIE40_RS02565 0.87 +0.9
507,905 - ABIE40_RS02565 0.87 -0.1
507,905 - ABIE40_RS02565 0.87 -0.6
507,905 - ABIE40_RS02565 0.87 +1.5
507,905 - ABIE40_RS02565 0.87 +1.5
508,060 + +0.7
508,113 - -0.5
508,342 - +1.4
508,342 - -0.2
508,347 + +0.6
508,347 + -1.4
508,347 + +0.4
508,347 + -0.1
508,347 + -0.1
508,348 - +1.9
508,360 + -1.8
508,393 + -0.6
508,394 + +1.9
508,394 + -2.1
508,394 + +0.4
508,394 + -0.6
508,394 + -0.9
508,394 + +1.5
508,395 - +0.2
508,395 - +0.2
508,395 - -0.1
508,395 - -1.3
508,433 + -0.6
508,433 + -0.9
508,434 - +0.1
508,611 + ABIE40_RS02575 0.68 -2.2
508,611 + ABIE40_RS02575 0.68 +0.4
508,785 + -1.3
508,785 + -1.7
508,807 - -1.6
508,807 - +0.6
508,807 - -0.8
508,873 - +0.4
508,873 - -0.6
508,873 - -0.1
508,874 + -0.9
508,874 + -1.0
508,875 - -0.4
508,875 - -1.2
508,932 + -0.9
508,932 + -0.7
508,933 - -2.5
508,933 - -1.9
509,034 + -2.8
509,034 + -0.9
509,034 + +0.5
509,034 + +0.4
509,034 + -1.3
509,034 + -1.0
509,035 - -1.5
509,035 - -0.6
509,035 - -1.4
509,109 + ABIE40_RS02580 0.14 -1.9
509,109 + ABIE40_RS02580 0.14 -0.3
509,109 + ABIE40_RS02580 0.14 -3.9
509,109 + ABIE40_RS02580 0.14 -2.2
509,109 + ABIE40_RS02580 0.14 +1.9
509,109 + ABIE40_RS02580 0.14 -0.6
509,110 - ABIE40_RS02580 0.14 +2.2
509,110 - ABIE40_RS02580 0.14 -0.6
509,110 - ABIE40_RS02580 0.14 -1.1
509,118 + ABIE40_RS02580 0.14 -2.3
509,119 - ABIE40_RS02580 0.14 +0.9
509,119 - ABIE40_RS02580 0.14 -1.8
509,181 + ABIE40_RS02580 0.18 +0.5
509,182 - ABIE40_RS02580 0.18 -1.6
509,182 - ABIE40_RS02580 0.18 -0.2
509,182 - ABIE40_RS02580 0.18 -0.1
509,182 - ABIE40_RS02580 0.18 +1.4
509,209 - ABIE40_RS02580 0.19 -1.5
509,241 + ABIE40_RS02580 0.21 +0.8
509,241 + ABIE40_RS02580 0.21 -0.2
509,241 + ABIE40_RS02580 0.21 -2.3
509,242 - ABIE40_RS02580 0.21 -1.4
509,242 - ABIE40_RS02580 0.21 -0.2
509,242 - ABIE40_RS02580 0.21 -0.4
509,242 - ABIE40_RS02580 0.21 -1.5
509,242 - ABIE40_RS02580 0.21 -2.3
509,310 + ABIE40_RS02580 0.25 -1.1
509,311 - ABIE40_RS02580 0.25 -2.8
509,311 - ABIE40_RS02580 0.25 -2.7
509,311 - ABIE40_RS02580 0.25 +0.2
509,311 - ABIE40_RS02580 0.25 -2.4
509,311 - ABIE40_RS02580 0.25 +0.4
509,311 - ABIE40_RS02580 0.25 -0.7
509,427 + ABIE40_RS02580 0.31 -2.4
509,427 + ABIE40_RS02580 0.31 -1.6
509,428 - ABIE40_RS02580 0.31 -0.3
509,428 - ABIE40_RS02580 0.31 -0.3
509,428 - ABIE40_RS02580 0.31 -2.0
509,428 - ABIE40_RS02580 0.31 -0.7
509,486 + ABIE40_RS02580 0.35 -0.1
509,487 - ABIE40_RS02580 0.35 -4.2
509,531 + ABIE40_RS02580 0.37 -2.3
509,670 + ABIE40_RS02580 0.45 -0.6
509,670 + ABIE40_RS02580 0.45 -0.7
509,670 + ABIE40_RS02580 0.45 -1.4
509,670 + ABIE40_RS02580 0.45 -1.2
509,670 + ABIE40_RS02580 0.45 -2.1
509,670 + ABIE40_RS02580 0.45 +1.4
509,670 + ABIE40_RS02580 0.45 -2.0
509,670 + ABIE40_RS02580 0.45 -0.9
509,670 + ABIE40_RS02580 0.45 -1.2
509,670 + ABIE40_RS02580 0.45 +0.9
509,671 - ABIE40_RS02580 0.45 -2.4
509,671 - ABIE40_RS02580 0.45 -1.2
509,671 - ABIE40_RS02580 0.45 -0.7
509,671 - ABIE40_RS02580 0.45 +1.3
509,671 - ABIE40_RS02580 0.45 -2.4
509,671 - ABIE40_RS02580 0.45 -1.5
509,689 - ABIE40_RS02580 0.46 -1.8
509,689 - ABIE40_RS02580 0.46 -3.0

Or see this region's nucleotide sequence