Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01440 and ABIE40_RS01445 overlap by 4 nucleotides ABIE40_RS01445 and ABIE40_RS01450 are separated by 91 nucleotides ABIE40_RS01450 and ABIE40_RS01455 are separated by 15 nucleotides
ABIE40_RS01440: ABIE40_RS01440 - GNAT family N-acetyltransferase, at 281,080 to 281,967
_RS01440
ABIE40_RS01445: ABIE40_RS01445 - dUTP diphosphatase, at 281,964 to 282,434
_RS01445
ABIE40_RS01450: ABIE40_RS01450 - peptide chain release factor 3, at 282,526 to 284,109
_RS01450
ABIE40_RS01455: ABIE40_RS01455 - choline-sulfatase, at 284,125 to 285,639
_RS01455
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 281.570 kb on + strand, within ABIE40_RS01440 at 281.571 kb on - strand, within ABIE40_RS01440 at 281.571 kb on - strand, within ABIE40_RS01440 at 281.580 kb on - strand, within ABIE40_RS01440 at 281.580 kb on - strand, within ABIE40_RS01440 at 281.598 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.601 kb on - strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.921 kb on + strand at 281.921 kb on + strand at 281.922 kb on - strand at 281.967 kb on + strand at 281.967 kb on + strand at 281.968 kb on - strand at 281.968 kb on - strand at 281.968 kb on - strand at 281.968 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.495 kb on - strand at 282.499 kb on - strand at 282.499 kb on - strand at 282.499 kb on - strand at 282.576 kb on + strand at 282.576 kb on + strand at 282.577 kb on - strand at 282.758 kb on - strand, within ABIE40_RS01450 at 282.820 kb on + strand, within ABIE40_RS01450 at 282.820 kb on + strand, within ABIE40_RS01450 at 282.820 kb on + strand, within ABIE40_RS01450 at 282.821 kb on - strand, within ABIE40_RS01450 at 283.069 kb on + strand, within ABIE40_RS01450 at 283.069 kb on + strand, within ABIE40_RS01450 at 283.069 kb on + strand, within ABIE40_RS01450 at 283.069 kb on + strand, within ABIE40_RS01450 at 283.069 kb on + strand, within ABIE40_RS01450 at 283.070 kb on - strand, within ABIE40_RS01450 at 283.070 kb on - strand, within ABIE40_RS01450 at 283.070 kb on - strand, within ABIE40_RS01450 at 283.251 kb on + strand, within ABIE40_RS01450 at 283.251 kb on + strand, within ABIE40_RS01450 at 283.252 kb on - strand, within ABIE40_RS01450 at 283.252 kb on - strand, within ABIE40_RS01450 at 283.262 kb on + strand, within ABIE40_RS01450 at 283.263 kb on - strand, within ABIE40_RS01450 at 283.263 kb on - strand, within ABIE40_RS01450 at 283.506 kb on + strand, within ABIE40_RS01450 at 283.579 kb on + strand, within ABIE40_RS01450 at 283.579 kb on + strand, within ABIE40_RS01450 at 283.870 kb on + strand, within ABIE40_RS01450 at 283.871 kb on - strand, within ABIE40_RS01450 at 284.039 kb on - strand at 284.039 kb on - strand at 284.086 kb on + strand at 284.086 kb on + strand at 284.087 kb on - strand at 284.087 kb on - strand at 284.087 kb on - strand at 284.110 kb on + strand at 284.110 kb on + strand at 284.110 kb on + strand at 284.111 kb on - strand at 284.189 kb on + strand at 284.189 kb on + strand at 284.189 kb on + strand at 284.189 kb on + strand at 284.189 kb on + strand at 284.189 kb on + strand at 284.189 kb on + strand at 284.190 kb on - strand at 284.219 kb on + strand at 284.219 kb on + strand at 284.220 kb on - strand at 284.220 kb on - strand at 284.231 kb on + strand at 284.231 kb on + strand at 284.231 kb on + strand at 284.232 kb on - strand at 284.234 kb on + strand at 284.234 kb on + strand at 284.235 kb on - strand at 284.235 kb on - strand at 284.235 kb on - strand at 284.258 kb on + strand at 284.259 kb on - strand at 284.303 kb on + strand, within ABIE40_RS01455 at 284.303 kb on + strand, within ABIE40_RS01455 at 284.304 kb on - strand, within ABIE40_RS01455 at 284.304 kb on - strand, within ABIE40_RS01455 at 284.342 kb on - strand, within ABIE40_RS01455 at 284.507 kb on + strand, within ABIE40_RS01455 at 284.507 kb on + strand, within ABIE40_RS01455 at 284.507 kb on + strand, within ABIE40_RS01455 at 284.507 kb on + strand, within ABIE40_RS01455 at 284.508 kb on - strand, within ABIE40_RS01455 at 284.508 kb on - strand, within ABIE40_RS01455 at 284.508 kb on - strand, within ABIE40_RS01455 at 284.508 kb on - strand, within ABIE40_RS01455 at 284.508 kb on - strand, within ABIE40_RS01455 at 284.596 kb on - strand, within ABIE40_RS01455 at 284.790 kb on + strand, within ABIE40_RS01455 at 284.790 kb on + strand, within ABIE40_RS01455 at 284.790 kb on + strand, within ABIE40_RS01455 at 284.853 kb on - strand, within ABIE40_RS01455 at 284.853 kb on - strand, within ABIE40_RS01455 at 284.859 kb on + strand, within ABIE40_RS01455 at 284.859 kb on + strand, within ABIE40_RS01455 at 284.860 kb on - strand, within ABIE40_RS01455 at 284.860 kb on - strand, within ABIE40_RS01455 at 284.870 kb on + strand, within ABIE40_RS01455 at 284.919 kb on + strand, within ABIE40_RS01455 at 284.920 kb on - strand, within ABIE40_RS01455 at 284.920 kb on - strand, within ABIE40_RS01455 at 284.920 kb on - strand, within ABIE40_RS01455 at 284.921 kb on + strand, within ABIE40_RS01455 at 284.921 kb on + strand, within ABIE40_RS01455 at 284.921 kb on + strand, within ABIE40_RS01455 at 284.922 kb on - strand, within ABIE40_RS01455 at 284.922 kb on - strand, within ABIE40_RS01455 at 284.922 kb on - strand, within ABIE40_RS01455 at 284.974 kb on + strand, within ABIE40_RS01455 at 285.014 kb on + strand, within ABIE40_RS01455 at 285.015 kb on - strand, within ABIE40_RS01455 at 285.044 kb on + strand, within ABIE40_RS01455 at 285.044 kb on + strand, within ABIE40_RS01455 at 285.045 kb on - strand, within ABIE40_RS01455 at 285.045 kb on - strand, within ABIE40_RS01455 at 285.045 kb on - strand, within ABIE40_RS01455 at 285.045 kb on - strand, within ABIE40_RS01455 at 285.045 kb on - strand, within ABIE40_RS01455 at 285.045 kb on - strand, within ABIE40_RS01455
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 281,570 + ABIE40_RS01440 0.55 -0.4 281,571 - ABIE40_RS01440 0.55 +0.2 281,571 - ABIE40_RS01440 0.55 +0.7 281,580 - ABIE40_RS01440 0.56 +0.7 281,580 - ABIE40_RS01440 0.56 +0.1 281,598 + ABIE40_RS01440 0.58 +0.4 281,600 + ABIE40_RS01440 0.59 -0.2 281,600 + ABIE40_RS01440 0.59 +0.4 281,600 + ABIE40_RS01440 0.59 -0.2 281,600 + ABIE40_RS01440 0.59 -0.2 281,600 + ABIE40_RS01440 0.59 -0.0 281,600 + ABIE40_RS01440 0.59 +1.1 281,601 - ABIE40_RS01440 0.59 -1.9 281,814 + ABIE40_RS01440 0.83 -0.8 281,814 + ABIE40_RS01440 0.83 +1.4 281,814 + ABIE40_RS01440 0.83 +2.0 281,814 + ABIE40_RS01440 0.83 +1.2 281,814 + ABIE40_RS01440 0.83 +0.7 281,814 + ABIE40_RS01440 0.83 -0.7 281,814 + ABIE40_RS01440 0.83 -0.0 281,814 + ABIE40_RS01440 0.83 +1.1 281,815 - ABIE40_RS01440 0.83 -0.1 281,815 - ABIE40_RS01440 0.83 -1.6 281,815 - ABIE40_RS01440 0.83 -1.3 281,815 - ABIE40_RS01440 0.83 +0.3 281,815 - ABIE40_RS01440 0.83 +0.4 281,921 + -2.1 281,921 + -0.6 281,922 - +0.0 281,967 + -0.6 281,967 + -1.2 281,968 - -0.8 281,968 - +0.4 281,968 - -0.9 281,968 - -3.2 282,444 - -0.4 282,444 - -1.3 282,444 - -0.6 282,444 - -0.5 282,444 - -0.2 282,495 - -1.5 282,499 - +1.0 282,499 - -0.7 282,499 - -1.0 282,576 + -0.9 282,576 + -1.1 282,577 - -0.6 282,758 - ABIE40_RS01450 0.15 -1.2 282,820 + ABIE40_RS01450 0.19 -1.5 282,820 + ABIE40_RS01450 0.19 -1.2 282,820 + ABIE40_RS01450 0.19 +0.4 282,821 - ABIE40_RS01450 0.19 -0.0 283,069 + ABIE40_RS01450 0.34 -0.6 283,069 + ABIE40_RS01450 0.34 -2.6 283,069 + ABIE40_RS01450 0.34 +2.0 283,069 + ABIE40_RS01450 0.34 -2.9 283,069 + ABIE40_RS01450 0.34 -1.6 283,070 - ABIE40_RS01450 0.34 -1.2 283,070 - ABIE40_RS01450 0.34 -0.7 283,070 - ABIE40_RS01450 0.34 -0.1 283,251 + ABIE40_RS01450 0.46 -1.7 283,251 + ABIE40_RS01450 0.46 -0.8 283,252 - ABIE40_RS01450 0.46 +0.4 283,252 - ABIE40_RS01450 0.46 -2.6 283,262 + ABIE40_RS01450 0.46 -1.6 283,263 - ABIE40_RS01450 0.47 -0.6 283,263 - ABIE40_RS01450 0.47 -1.7 283,506 + ABIE40_RS01450 0.62 -2.8 283,579 + ABIE40_RS01450 0.66 -3.7 283,579 + ABIE40_RS01450 0.66 -0.6 283,870 + ABIE40_RS01450 0.85 -1.2 283,871 - ABIE40_RS01450 0.85 -1.0 284,039 - -2.7 284,039 - -0.7 284,086 + +1.7 284,086 + +0.4 284,087 - +0.1 284,087 - -0.7 284,087 - -0.9 284,110 + -0.4 284,110 + +0.8 284,110 + +0.1 284,111 - -0.1 284,189 + -1.5 284,189 + -0.3 284,189 + +1.3 284,189 + +0.7 284,189 + +1.4 284,189 + -1.0 284,189 + +0.4 284,190 - -1.4 284,219 + +0.5 284,219 + -0.6 284,220 - +1.0 284,220 - +1.4 284,231 + +0.5 284,231 + -3.2 284,231 + -1.5 284,232 - -0.5 284,234 + -0.1 284,234 + -1.4 284,235 - +1.0 284,235 - +0.3 284,235 - +0.2 284,258 + +0.7 284,259 - +0.5 284,303 + ABIE40_RS01455 0.12 +0.4 284,303 + ABIE40_RS01455 0.12 -0.4 284,304 - ABIE40_RS01455 0.12 -0.1 284,304 - ABIE40_RS01455 0.12 -1.6 284,342 - ABIE40_RS01455 0.14 +0.1 284,507 + ABIE40_RS01455 0.25 -0.8 284,507 + ABIE40_RS01455 0.25 +0.7 284,507 + ABIE40_RS01455 0.25 +0.6 284,507 + ABIE40_RS01455 0.25 +0.7 284,508 - ABIE40_RS01455 0.25 +1.7 284,508 - ABIE40_RS01455 0.25 -2.2 284,508 - ABIE40_RS01455 0.25 -0.4 284,508 - ABIE40_RS01455 0.25 +0.3 284,508 - ABIE40_RS01455 0.25 -1.1 284,596 - ABIE40_RS01455 0.31 +0.0 284,790 + ABIE40_RS01455 0.44 +0.3 284,790 + ABIE40_RS01455 0.44 -0.1 284,790 + ABIE40_RS01455 0.44 -0.1 284,853 - ABIE40_RS01455 0.48 -2.3 284,853 - ABIE40_RS01455 0.48 -1.4 284,859 + ABIE40_RS01455 0.48 +1.5 284,859 + ABIE40_RS01455 0.48 +0.5 284,860 - ABIE40_RS01455 0.49 -0.9 284,860 - ABIE40_RS01455 0.49 -0.6 284,870 + ABIE40_RS01455 0.49 +0.7 284,919 + ABIE40_RS01455 0.52 +0.5 284,920 - ABIE40_RS01455 0.52 +0.4 284,920 - ABIE40_RS01455 0.52 -0.5 284,920 - ABIE40_RS01455 0.52 +0.2 284,921 + ABIE40_RS01455 0.53 +0.4 284,921 + ABIE40_RS01455 0.53 -1.5 284,921 + ABIE40_RS01455 0.53 +1.2 284,922 - ABIE40_RS01455 0.53 -0.6 284,922 - ABIE40_RS01455 0.53 -0.6 284,922 - ABIE40_RS01455 0.53 -0.7 284,974 + ABIE40_RS01455 0.56 -1.9 285,014 + ABIE40_RS01455 0.59 -1.0 285,015 - ABIE40_RS01455 0.59 +0.7 285,044 + ABIE40_RS01455 0.61 +1.8 285,044 + ABIE40_RS01455 0.61 +1.2 285,045 - ABIE40_RS01455 0.61 -0.6 285,045 - ABIE40_RS01455 0.61 +0.5 285,045 - ABIE40_RS01455 0.61 -0.0 285,045 - ABIE40_RS01455 0.61 -0.2 285,045 - ABIE40_RS01455 0.61 +0.5 285,045 - ABIE40_RS01455 0.61 -0.1
Or see this region's nucleotide sequence