Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30790 and ABIE40_RS30795 are separated by 123 nucleotides ABIE40_RS30795 and ABIE40_RS30800 are separated by 166 nucleotides ABIE40_RS30800 and ABIE40_RS30805 are separated by 9 nucleotides
ABIE40_RS30790: ABIE40_RS30790 - manganese catalase family protein, at 848,017 to 848,874
_RS30790
ABIE40_RS30795: ABIE40_RS30795 - NAD(P)/FAD-dependent oxidoreductase, at 848,998 to 850,299
_RS30795
ABIE40_RS30800: ABIE40_RS30800 - hypothetical protein, at 850,466 to 850,714
_RS30800
ABIE40_RS30805: ABIE40_RS30805 - zinc-dependent alcohol dehydrogenase, at 850,724 to 851,899
_RS30805
Position (kb) 848
849
850
851 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 848.012 kb on + strand at 848.012 kb on + strand at 848.012 kb on + strand at 848.013 kb on - strand at 848.190 kb on + strand, within ABIE40_RS30790 at 848.307 kb on + strand, within ABIE40_RS30790 at 848.409 kb on + strand, within ABIE40_RS30790 at 848.409 kb on + strand, within ABIE40_RS30790 at 848.473 kb on + strand, within ABIE40_RS30790 at 848.473 kb on + strand, within ABIE40_RS30790 at 848.474 kb on - strand, within ABIE40_RS30790 at 848.474 kb on - strand, within ABIE40_RS30790 at 848.508 kb on - strand, within ABIE40_RS30790 at 848.947 kb on - strand at 848.979 kb on + strand at 848.980 kb on - strand at 848.980 kb on - strand at 848.980 kb on - strand at 848.980 kb on - strand at 848.980 kb on - strand at 848.995 kb on - strand at 849.045 kb on - strand at 849.045 kb on - strand at 849.051 kb on + strand at 849.052 kb on - strand at 849.090 kb on + strand at 849.090 kb on + strand at 849.112 kb on + strand at 849.305 kb on - strand, within ABIE40_RS30795 at 849.579 kb on - strand, within ABIE40_RS30795 at 849.579 kb on - strand, within ABIE40_RS30795 at 849.628 kb on + strand, within ABIE40_RS30795 at 849.628 kb on + strand, within ABIE40_RS30795 at 849.629 kb on - strand, within ABIE40_RS30795 at 849.728 kb on + strand, within ABIE40_RS30795 at 849.729 kb on - strand, within ABIE40_RS30795 at 849.763 kb on - strand, within ABIE40_RS30795 at 849.763 kb on - strand, within ABIE40_RS30795 at 849.796 kb on - strand, within ABIE40_RS30795 at 849.949 kb on + strand, within ABIE40_RS30795 at 849.949 kb on + strand, within ABIE40_RS30795 at 849.950 kb on - strand, within ABIE40_RS30795 at 849.966 kb on - strand, within ABIE40_RS30795 at 850.092 kb on - strand, within ABIE40_RS30795 at 850.092 kb on - strand, within ABIE40_RS30795 at 850.114 kb on + strand, within ABIE40_RS30795 at 850.114 kb on + strand, within ABIE40_RS30795 at 850.171 kb on + strand at 850.171 kb on + strand at 850.175 kb on + strand at 850.262 kb on + strand at 850.386 kb on - strand at 850.605 kb on + strand, within ABIE40_RS30800 at 850.715 kb on + strand at 850.746 kb on - strand at 850.762 kb on + strand at 850.780 kb on - strand at 850.820 kb on + strand at 850.963 kb on - strand, within ABIE40_RS30805 at 851.060 kb on + strand, within ABIE40_RS30805 at 851.061 kb on - strand, within ABIE40_RS30805 at 851.061 kb on - strand, within ABIE40_RS30805 at 851.152 kb on + strand, within ABIE40_RS30805 at 851.243 kb on + strand, within ABIE40_RS30805 at 851.281 kb on + strand, within ABIE40_RS30805 at 851.281 kb on + strand, within ABIE40_RS30805 at 851.282 kb on - strand, within ABIE40_RS30805 at 851.282 kb on - strand, within ABIE40_RS30805 at 851.296 kb on + strand, within ABIE40_RS30805 at 851.297 kb on - strand, within ABIE40_RS30805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 848,012 + +2.0 848,012 + +2.6 848,012 + -1.0 848,013 - -0.8 848,190 + ABIE40_RS30790 0.20 +0.9 848,307 + ABIE40_RS30790 0.34 +1.3 848,409 + ABIE40_RS30790 0.46 -1.0 848,409 + ABIE40_RS30790 0.46 -1.8 848,473 + ABIE40_RS30790 0.53 -0.2 848,473 + ABIE40_RS30790 0.53 +1.5 848,474 - ABIE40_RS30790 0.53 -0.2 848,474 - ABIE40_RS30790 0.53 +1.8 848,508 - ABIE40_RS30790 0.57 +1.6 848,947 - -2.3 848,979 + +0.8 848,980 - +0.9 848,980 - -2.0 848,980 - +1.6 848,980 - -0.2 848,980 - +0.8 848,995 - -1.4 849,045 - +2.7 849,045 - -0.0 849,051 + +0.9 849,052 - -0.0 849,090 + +0.7 849,090 + +1.6 849,112 + +1.9 849,305 - ABIE40_RS30795 0.24 -1.6 849,579 - ABIE40_RS30795 0.45 -1.5 849,579 - ABIE40_RS30795 0.45 -0.8 849,628 + ABIE40_RS30795 0.48 +2.0 849,628 + ABIE40_RS30795 0.48 -1.4 849,629 - ABIE40_RS30795 0.48 +1.1 849,728 + ABIE40_RS30795 0.56 +1.0 849,729 - ABIE40_RS30795 0.56 -2.0 849,763 - ABIE40_RS30795 0.59 -0.9 849,763 - ABIE40_RS30795 0.59 +1.0 849,796 - ABIE40_RS30795 0.61 -0.2 849,949 + ABIE40_RS30795 0.73 +2.4 849,949 + ABIE40_RS30795 0.73 +3.7 849,950 - ABIE40_RS30795 0.73 -0.4 849,966 - ABIE40_RS30795 0.74 -1.3 850,092 - ABIE40_RS30795 0.84 -0.0 850,092 - ABIE40_RS30795 0.84 -1.3 850,114 + ABIE40_RS30795 0.86 +0.2 850,114 + ABIE40_RS30795 0.86 +1.0 850,171 + +2.6 850,171 + +1.0 850,175 + +1.6 850,262 + -0.4 850,386 - -0.2 850,605 + ABIE40_RS30800 0.56 +1.6 850,715 + -1.2 850,746 - -0.1 850,762 + +0.6 850,780 - +3.7 850,820 + -1.9 850,963 - ABIE40_RS30805 0.20 +2.6 851,060 + ABIE40_RS30805 0.29 +0.6 851,061 - ABIE40_RS30805 0.29 -0.6 851,061 - ABIE40_RS30805 0.29 -1.4 851,152 + ABIE40_RS30805 0.36 +0.2 851,243 + ABIE40_RS30805 0.44 +0.3 851,281 + ABIE40_RS30805 0.47 +0.6 851,281 + ABIE40_RS30805 0.47 -1.4 851,282 - ABIE40_RS30805 0.47 +2.0 851,282 - ABIE40_RS30805 0.47 +2.6 851,296 + ABIE40_RS30805 0.49 -0.2 851,297 - ABIE40_RS30805 0.49 -2.1
Or see this region's nucleotide sequence