Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22915

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS22905 and ABIE40_RS22910 are separated by 289 nucleotidesABIE40_RS22910 and ABIE40_RS22915 are separated by 390 nucleotidesABIE40_RS22915 and ABIE40_RS22920 are separated by 21 nucleotides ABIE40_RS22905: ABIE40_RS22905 - 5S ribosomal RNA, at 728,247 to 728,361 _RS22905 ABIE40_RS22910: ABIE40_RS22910 - tRNA-Met, at 728,651 to 728,727 _RS22910 ABIE40_RS22915: ABIE40_RS22915 - MsnO8 family LLM class oxidoreductase, at 729,118 to 730,110 _RS22915 ABIE40_RS22920: ABIE40_RS22920 - LLM class flavin-dependent oxidoreductase, at 730,132 to 731,481 _RS22920 Position (kb) 729 730 731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 728.588 kb on + strandat 728.594 kb on + strandat 728.594 kb on + strandat 728.614 kb on - strandat 728.783 kb on - strandat 728.786 kb on + strandat 728.786 kb on + strandat 728.786 kb on + strandat 728.787 kb on - strandat 728.787 kb on - strandat 728.787 kb on - strandat 728.990 kb on - strandat 728.990 kb on - strandat 729.124 kb on + strandat 729.124 kb on + strandat 729.124 kb on + strandat 729.124 kb on + strandat 729.124 kb on + strandat 729.125 kb on - strandat 729.125 kb on - strandat 729.125 kb on - strandat 729.125 kb on - strandat 729.125 kb on - strandat 729.229 kb on + strand, within ABIE40_RS22915at 729.258 kb on + strand, within ABIE40_RS22915at 729.258 kb on + strand, within ABIE40_RS22915at 729.258 kb on + strand, within ABIE40_RS22915at 729.259 kb on - strand, within ABIE40_RS22915at 729.259 kb on - strand, within ABIE40_RS22915at 729.259 kb on - strand, within ABIE40_RS22915at 729.259 kb on - strand, within ABIE40_RS22915at 729.259 kb on - strand, within ABIE40_RS22915at 729.267 kb on + strand, within ABIE40_RS22915at 729.304 kb on + strand, within ABIE40_RS22915at 729.304 kb on + strand, within ABIE40_RS22915at 729.304 kb on + strand, within ABIE40_RS22915at 729.305 kb on - strand, within ABIE40_RS22915at 729.351 kb on - strand, within ABIE40_RS22915at 729.351 kb on - strand, within ABIE40_RS22915at 729.351 kb on - strand, within ABIE40_RS22915at 729.351 kb on - strand, within ABIE40_RS22915at 729.351 kb on - strand, within ABIE40_RS22915at 729.351 kb on - strand, within ABIE40_RS22915at 729.364 kb on + strand, within ABIE40_RS22915at 729.364 kb on + strand, within ABIE40_RS22915at 729.364 kb on + strand, within ABIE40_RS22915at 729.364 kb on + strand, within ABIE40_RS22915at 729.364 kb on + strand, within ABIE40_RS22915at 729.364 kb on + strand, within ABIE40_RS22915at 729.365 kb on - strand, within ABIE40_RS22915at 729.365 kb on - strand, within ABIE40_RS22915at 729.365 kb on - strand, within ABIE40_RS22915at 729.365 kb on - strand, within ABIE40_RS22915at 729.365 kb on - strand, within ABIE40_RS22915at 729.365 kb on - strand, within ABIE40_RS22915at 729.366 kb on + strand, within ABIE40_RS22915at 729.367 kb on - strand, within ABIE40_RS22915at 729.367 kb on - strand, within ABIE40_RS22915at 729.367 kb on - strand, within ABIE40_RS22915at 729.367 kb on - strand, within ABIE40_RS22915at 729.373 kb on + strand, within ABIE40_RS22915at 729.373 kb on + strand, within ABIE40_RS22915at 729.373 kb on + strand, within ABIE40_RS22915at 729.374 kb on - strand, within ABIE40_RS22915at 729.544 kb on + strand, within ABIE40_RS22915at 729.545 kb on - strand, within ABIE40_RS22915at 729.589 kb on - strand, within ABIE40_RS22915at 729.922 kb on + strand, within ABIE40_RS22915at 729.922 kb on + strand, within ABIE40_RS22915at 729.923 kb on - strand, within ABIE40_RS22915at 730.108 kb on + strandat 730.109 kb on - strandat 730.109 kb on - strandat 730.109 kb on - strandat 730.243 kb on + strandat 730.244 kb on - strandat 730.244 kb on - strandat 730.244 kb on - strandat 730.244 kb on - strandat 730.251 kb on + strandat 730.309 kb on + strand, within ABIE40_RS22920at 730.309 kb on + strand, within ABIE40_RS22920at 730.309 kb on + strand, within ABIE40_RS22920at 730.314 kb on + strand, within ABIE40_RS22920at 730.426 kb on + strand, within ABIE40_RS22920at 730.426 kb on + strand, within ABIE40_RS22920at 730.426 kb on + strand, within ABIE40_RS22920at 730.426 kb on + strand, within ABIE40_RS22920at 730.427 kb on - strand, within ABIE40_RS22920at 730.427 kb on - strand, within ABIE40_RS22920at 730.427 kb on - strand, within ABIE40_RS22920at 730.537 kb on + strand, within ABIE40_RS22920at 730.537 kb on + strand, within ABIE40_RS22920at 730.538 kb on - strand, within ABIE40_RS22920at 730.538 kb on - strand, within ABIE40_RS22920at 730.538 kb on - strand, within ABIE40_RS22920at 730.570 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.588 kb on + strand, within ABIE40_RS22920at 730.589 kb on - strand, within ABIE40_RS22920at 730.589 kb on - strand, within ABIE40_RS22920at 730.590 kb on + strand, within ABIE40_RS22920at 730.590 kb on + strand, within ABIE40_RS22920at 730.590 kb on + strand, within ABIE40_RS22920at 730.591 kb on - strand, within ABIE40_RS22920at 730.591 kb on - strand, within ABIE40_RS22920at 730.663 kb on + strand, within ABIE40_RS22920at 730.663 kb on + strand, within ABIE40_RS22920at 730.664 kb on - strand, within ABIE40_RS22920at 730.664 kb on - strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.867 kb on + strand, within ABIE40_RS22920at 730.868 kb on - strand, within ABIE40_RS22920at 730.868 kb on - strand, within ABIE40_RS22920at 730.868 kb on - strand, within ABIE40_RS22920at 730.927 kb on + strand, within ABIE40_RS22920at 730.927 kb on + strand, within ABIE40_RS22920at 730.981 kb on + strand, within ABIE40_RS22920at 730.981 kb on + strand, within ABIE40_RS22920at 730.982 kb on - strand, within ABIE40_RS22920at 730.982 kb on - strand, within ABIE40_RS22920at 731.005 kb on - strand, within ABIE40_RS22920at 731.027 kb on - strand, within ABIE40_RS22920at 731.066 kb on - strand, within ABIE40_RS22920at 731.066 kb on - strand, within ABIE40_RS22920at 731.072 kb on + strand, within ABIE40_RS22920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
remove
728,588 + +2.0
728,594 + -2.1
728,594 + -2.2
728,614 - -2.1
728,783 - +1.2
728,786 + -0.1
728,786 + +0.6
728,786 + -0.6
728,787 - -2.2
728,787 - -0.7
728,787 - +0.1
728,990 - +1.2
728,990 - +1.8
729,124 + +1.4
729,124 + -3.2
729,124 + -1.4
729,124 + -4.0
729,124 + -1.5
729,125 - +2.1
729,125 - -1.6
729,125 - -0.4
729,125 - -0.4
729,125 - -0.4
729,229 + ABIE40_RS22915 0.11 -0.1
729,258 + ABIE40_RS22915 0.14 -0.8
729,258 + ABIE40_RS22915 0.14 +1.5
729,258 + ABIE40_RS22915 0.14 +0.1
729,259 - ABIE40_RS22915 0.14 +2.2
729,259 - ABIE40_RS22915 0.14 -1.4
729,259 - ABIE40_RS22915 0.14 -2.8
729,259 - ABIE40_RS22915 0.14 -1.4
729,259 - ABIE40_RS22915 0.14 -2.0
729,267 + ABIE40_RS22915 0.15 -1.0
729,304 + ABIE40_RS22915 0.19 -2.6
729,304 + ABIE40_RS22915 0.19 +1.6
729,304 + ABIE40_RS22915 0.19 -0.8
729,305 - ABIE40_RS22915 0.19 +1.3
729,351 - ABIE40_RS22915 0.23 -0.5
729,351 - ABIE40_RS22915 0.23 -1.2
729,351 - ABIE40_RS22915 0.23 +1.7
729,351 - ABIE40_RS22915 0.23 -2.4
729,351 - ABIE40_RS22915 0.23 -0.1
729,351 - ABIE40_RS22915 0.23 -0.8
729,364 + ABIE40_RS22915 0.25 -1.8
729,364 + ABIE40_RS22915 0.25 +1.5
729,364 + ABIE40_RS22915 0.25 -0.4
729,364 + ABIE40_RS22915 0.25 +0.9
729,364 + ABIE40_RS22915 0.25 +1.0
729,364 + ABIE40_RS22915 0.25 -1.5
729,365 - ABIE40_RS22915 0.25 -2.9
729,365 - ABIE40_RS22915 0.25 +1.8
729,365 - ABIE40_RS22915 0.25 +0.2
729,365 - ABIE40_RS22915 0.25 +0.2
729,365 - ABIE40_RS22915 0.25 -3.1
729,365 - ABIE40_RS22915 0.25 +1.0
729,366 + ABIE40_RS22915 0.25 -0.1
729,367 - ABIE40_RS22915 0.25 -2.9
729,367 - ABIE40_RS22915 0.25 +0.5
729,367 - ABIE40_RS22915 0.25 -0.4
729,367 - ABIE40_RS22915 0.25 +2.1
729,373 + ABIE40_RS22915 0.26 -0.4
729,373 + ABIE40_RS22915 0.26 +0.8
729,373 + ABIE40_RS22915 0.26 -0.4
729,374 - ABIE40_RS22915 0.26 -1.7
729,544 + ABIE40_RS22915 0.43 +1.7
729,545 - ABIE40_RS22915 0.43 +1.5
729,589 - ABIE40_RS22915 0.47 -1.5
729,922 + ABIE40_RS22915 0.81 +0.8
729,922 + ABIE40_RS22915 0.81 -2.4
729,923 - ABIE40_RS22915 0.81 +1.1
730,108 + -0.1
730,109 - -0.3
730,109 - +0.4
730,109 - -1.0
730,243 + -1.2
730,244 - -1.1
730,244 - -0.1
730,244 - +0.4
730,244 - -0.6
730,251 + +1.3
730,309 + ABIE40_RS22920 0.13 -3.0
730,309 + ABIE40_RS22920 0.13 -0.4
730,309 + ABIE40_RS22920 0.13 +0.3
730,314 + ABIE40_RS22920 0.13 -3.8
730,426 + ABIE40_RS22920 0.22 +0.2
730,426 + ABIE40_RS22920 0.22 +2.1
730,426 + ABIE40_RS22920 0.22 -0.5
730,426 + ABIE40_RS22920 0.22 +1.1
730,427 - ABIE40_RS22920 0.22 -1.0
730,427 - ABIE40_RS22920 0.22 -0.6
730,427 - ABIE40_RS22920 0.22 -1.4
730,537 + ABIE40_RS22920 0.30 -0.0
730,537 + ABIE40_RS22920 0.30 -1.7
730,538 - ABIE40_RS22920 0.30 +1.4
730,538 - ABIE40_RS22920 0.30 -3.6
730,538 - ABIE40_RS22920 0.30 +1.2
730,570 + ABIE40_RS22920 0.32 -2.2
730,588 + ABIE40_RS22920 0.34 +1.2
730,588 + ABIE40_RS22920 0.34 +0.3
730,588 + ABIE40_RS22920 0.34 -0.3
730,588 + ABIE40_RS22920 0.34 -2.7
730,588 + ABIE40_RS22920 0.34 -1.5
730,589 - ABIE40_RS22920 0.34 -0.5
730,589 - ABIE40_RS22920 0.34 +0.9
730,590 + ABIE40_RS22920 0.34 +1.2
730,590 + ABIE40_RS22920 0.34 -2.0
730,590 + ABIE40_RS22920 0.34 +1.4
730,591 - ABIE40_RS22920 0.34 -1.1
730,591 - ABIE40_RS22920 0.34 -2.2
730,663 + ABIE40_RS22920 0.39 -0.2
730,663 + ABIE40_RS22920 0.39 +1.5
730,664 - ABIE40_RS22920 0.39 -3.0
730,664 - ABIE40_RS22920 0.39 -2.1
730,867 + ABIE40_RS22920 0.54 +1.2
730,867 + ABIE40_RS22920 0.54 +0.2
730,867 + ABIE40_RS22920 0.54 +0.5
730,867 + ABIE40_RS22920 0.54 -0.4
730,867 + ABIE40_RS22920 0.54 -3.4
730,868 - ABIE40_RS22920 0.55 -3.1
730,868 - ABIE40_RS22920 0.55 -0.6
730,868 - ABIE40_RS22920 0.55 -1.7
730,927 + ABIE40_RS22920 0.59 -0.8
730,927 + ABIE40_RS22920 0.59 -1.5
730,981 + ABIE40_RS22920 0.63 -2.5
730,981 + ABIE40_RS22920 0.63 -0.2
730,982 - ABIE40_RS22920 0.63 +2.2
730,982 - ABIE40_RS22920 0.63 -2.4
731,005 - ABIE40_RS22920 0.65 -2.0
731,027 - ABIE40_RS22920 0.66 +1.0
731,066 - ABIE40_RS22920 0.69 -3.1
731,066 - ABIE40_RS22920 0.69 -0.6
731,072 + ABIE40_RS22920 0.70 -2.5

Or see this region's nucleotide sequence