Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22010

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS22000 and ABIE40_RS22005 are separated by 0 nucleotidesABIE40_RS22005 and ABIE40_RS22010 are separated by 92 nucleotidesABIE40_RS22010 and ABIE40_RS22015 are separated by 48 nucleotidesABIE40_RS22015 and ABIE40_RS22020 are separated by 58 nucleotides ABIE40_RS22000: ABIE40_RS22000 - RES family NAD+ phosphorylase, at 525,025 to 525,777 _RS22000 ABIE40_RS22005: ABIE40_RS22005 - MarR family winged helix-turn-helix transcriptional regulator, at 525,778 to 526,224 _RS22005 ABIE40_RS22010: ABIE40_RS22010 - thioredoxin family protein, at 526,317 to 527,045 _RS22010 ABIE40_RS22015: ABIE40_RS22015 - DUF1579 domain-containing protein, at 527,094 to 527,564 _RS22015 ABIE40_RS22020: ABIE40_RS22020 - VOC family protein, at 527,623 to 528,408 _RS22020 Position (kb) 526 527 528Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 525.355 kb on + strand, within ABIE40_RS22000at 525.355 kb on + strand, within ABIE40_RS22000at 525.356 kb on - strand, within ABIE40_RS22000at 525.387 kb on + strand, within ABIE40_RS22000at 525.388 kb on - strand, within ABIE40_RS22000at 525.388 kb on - strand, within ABIE40_RS22000at 525.415 kb on + strand, within ABIE40_RS22000at 525.415 kb on + strand, within ABIE40_RS22000at 525.416 kb on - strand, within ABIE40_RS22000at 525.416 kb on - strand, within ABIE40_RS22000at 525.416 kb on - strand, within ABIE40_RS22000at 525.417 kb on + strand, within ABIE40_RS22000at 525.417 kb on + strand, within ABIE40_RS22000at 525.417 kb on + strand, within ABIE40_RS22000at 525.418 kb on - strand, within ABIE40_RS22000at 525.418 kb on - strand, within ABIE40_RS22000at 525.418 kb on - strand, within ABIE40_RS22000at 525.466 kb on - strand, within ABIE40_RS22000at 525.514 kb on + strand, within ABIE40_RS22000at 525.514 kb on + strand, within ABIE40_RS22000at 525.515 kb on - strand, within ABIE40_RS22000at 525.515 kb on - strand, within ABIE40_RS22000at 525.950 kb on - strand, within ABIE40_RS22005at 525.955 kb on + strand, within ABIE40_RS22005at 525.955 kb on + strand, within ABIE40_RS22005at 525.955 kb on + strand, within ABIE40_RS22005at 525.956 kb on - strand, within ABIE40_RS22005at 525.956 kb on - strand, within ABIE40_RS22005at 525.956 kb on - strand, within ABIE40_RS22005at 525.983 kb on - strand, within ABIE40_RS22005at 526.200 kb on - strandat 526.458 kb on + strand, within ABIE40_RS22010at 526.458 kb on + strand, within ABIE40_RS22010at 526.528 kb on + strand, within ABIE40_RS22010at 526.528 kb on + strand, within ABIE40_RS22010at 526.528 kb on + strand, within ABIE40_RS22010at 526.529 kb on - strand, within ABIE40_RS22010at 526.529 kb on - strand, within ABIE40_RS22010at 526.529 kb on - strand, within ABIE40_RS22010at 526.529 kb on - strand, within ABIE40_RS22010at 526.529 kb on - strand, within ABIE40_RS22010at 526.529 kb on - strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.530 kb on + strand, within ABIE40_RS22010at 526.531 kb on - strand, within ABIE40_RS22010at 526.531 kb on - strand, within ABIE40_RS22010at 526.680 kb on + strand, within ABIE40_RS22010at 526.681 kb on - strand, within ABIE40_RS22010at 526.681 kb on - strand, within ABIE40_RS22010at 526.858 kb on - strand, within ABIE40_RS22010at 526.890 kb on + strand, within ABIE40_RS22010at 526.891 kb on - strand, within ABIE40_RS22010at 526.891 kb on - strand, within ABIE40_RS22010at 526.891 kb on - strand, within ABIE40_RS22010at 526.899 kb on + strand, within ABIE40_RS22010at 526.899 kb on + strand, within ABIE40_RS22010at 526.900 kb on - strand, within ABIE40_RS22010at 526.900 kb on - strand, within ABIE40_RS22010at 527.007 kb on + strandat 527.007 kb on + strandat 527.007 kb on + strandat 527.008 kb on - strandat 527.295 kb on + strand, within ABIE40_RS22015at 527.295 kb on + strand, within ABIE40_RS22015at 527.295 kb on + strand, within ABIE40_RS22015at 527.316 kb on + strand, within ABIE40_RS22015at 527.316 kb on + strand, within ABIE40_RS22015at 527.316 kb on + strand, within ABIE40_RS22015at 527.317 kb on - strand, within ABIE40_RS22015at 527.317 kb on - strand, within ABIE40_RS22015at 527.317 kb on - strand, within ABIE40_RS22015at 527.317 kb on - strand, within ABIE40_RS22015at 527.317 kb on - strand, within ABIE40_RS22015at 527.319 kb on - strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.351 kb on + strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.352 kb on - strand, within ABIE40_RS22015at 527.361 kb on + strand, within ABIE40_RS22015at 527.361 kb on + strand, within ABIE40_RS22015at 527.361 kb on + strand, within ABIE40_RS22015at 527.361 kb on + strand, within ABIE40_RS22015at 527.361 kb on + strand, within ABIE40_RS22015at 527.362 kb on - strand, within ABIE40_RS22015at 527.395 kb on + strand, within ABIE40_RS22015at 527.395 kb on + strand, within ABIE40_RS22015at 527.403 kb on + strand, within ABIE40_RS22015at 527.403 kb on + strand, within ABIE40_RS22015at 527.403 kb on + strand, within ABIE40_RS22015at 527.404 kb on - strand, within ABIE40_RS22015at 527.404 kb on - strand, within ABIE40_RS22015at 527.405 kb on + strand, within ABIE40_RS22015at 527.406 kb on - strand, within ABIE40_RS22015at 527.406 kb on - strand, within ABIE40_RS22015at 527.406 kb on - strand, within ABIE40_RS22015at 527.406 kb on - strand, within ABIE40_RS22015at 527.470 kb on + strand, within ABIE40_RS22015at 527.470 kb on + strand, within ABIE40_RS22015at 527.471 kb on - strand, within ABIE40_RS22015at 527.562 kb on + strandat 527.563 kb on - strandat 527.593 kb on + strandat 527.594 kb on - strandat 527.594 kb on - strandat 527.698 kb on + strandat 527.755 kb on + strand, within ABIE40_RS22020at 527.755 kb on + strand, within ABIE40_RS22020at 527.755 kb on + strand, within ABIE40_RS22020at 527.755 kb on + strand, within ABIE40_RS22020at 527.756 kb on - strand, within ABIE40_RS22020at 527.756 kb on - strand, within ABIE40_RS22020at 527.756 kb on - strand, within ABIE40_RS22020at 527.756 kb on - strand, within ABIE40_RS22020at 527.757 kb on + strand, within ABIE40_RS22020at 527.757 kb on + strand, within ABIE40_RS22020at 527.758 kb on - strand, within ABIE40_RS22020at 527.758 kb on - strand, within ABIE40_RS22020at 527.758 kb on - strand, within ABIE40_RS22020at 527.758 kb on - strand, within ABIE40_RS22020at 527.851 kb on + strand, within ABIE40_RS22020at 527.852 kb on - strand, within ABIE40_RS22020at 527.852 kb on - strand, within ABIE40_RS22020at 527.852 kb on - strand, within ABIE40_RS22020at 527.852 kb on - strand, within ABIE40_RS22020at 527.852 kb on - strand, within ABIE40_RS22020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
remove
525,355 + ABIE40_RS22000 0.44 +1.0
525,355 + ABIE40_RS22000 0.44 +1.2
525,356 - ABIE40_RS22000 0.44 -2.2
525,387 + ABIE40_RS22000 0.48 +0.9
525,388 - ABIE40_RS22000 0.48 +0.6
525,388 - ABIE40_RS22000 0.48 +0.6
525,415 + ABIE40_RS22000 0.52 +2.0
525,415 + ABIE40_RS22000 0.52 -0.1
525,416 - ABIE40_RS22000 0.52 -0.4
525,416 - ABIE40_RS22000 0.52 -3.0
525,416 - ABIE40_RS22000 0.52 -1.5
525,417 + ABIE40_RS22000 0.52 -1.9
525,417 + ABIE40_RS22000 0.52 -1.3
525,417 + ABIE40_RS22000 0.52 -2.2
525,418 - ABIE40_RS22000 0.52 -0.1
525,418 - ABIE40_RS22000 0.52 +4.6
525,418 - ABIE40_RS22000 0.52 -1.4
525,466 - ABIE40_RS22000 0.59 +0.2
525,514 + ABIE40_RS22000 0.65 +0.9
525,514 + ABIE40_RS22000 0.65 +0.6
525,515 - ABIE40_RS22000 0.65 -3.4
525,515 - ABIE40_RS22000 0.65 +1.2
525,950 - ABIE40_RS22005 0.38 -2.9
525,955 + ABIE40_RS22005 0.40 +2.2
525,955 + ABIE40_RS22005 0.40 -1.1
525,955 + ABIE40_RS22005 0.40 -2.9
525,956 - ABIE40_RS22005 0.40 -2.1
525,956 - ABIE40_RS22005 0.40 -3.5
525,956 - ABIE40_RS22005 0.40 -0.4
525,983 - ABIE40_RS22005 0.46 +1.4
526,200 - +0.8
526,458 + ABIE40_RS22010 0.19 -0.0
526,458 + ABIE40_RS22010 0.19 -3.9
526,528 + ABIE40_RS22010 0.29 +1.4
526,528 + ABIE40_RS22010 0.29 +0.2
526,528 + ABIE40_RS22010 0.29 +1.0
526,529 - ABIE40_RS22010 0.29 +0.5
526,529 - ABIE40_RS22010 0.29 +1.2
526,529 - ABIE40_RS22010 0.29 +1.0
526,529 - ABIE40_RS22010 0.29 +0.2
526,529 - ABIE40_RS22010 0.29 +0.2
526,529 - ABIE40_RS22010 0.29 +1.4
526,530 + ABIE40_RS22010 0.29 -0.4
526,530 + ABIE40_RS22010 0.29 -0.8
526,530 + ABIE40_RS22010 0.29 +0.2
526,530 + ABIE40_RS22010 0.29 -0.6
526,530 + ABIE40_RS22010 0.29 -1.0
526,530 + ABIE40_RS22010 0.29 -0.0
526,530 + ABIE40_RS22010 0.29 +1.0
526,530 + ABIE40_RS22010 0.29 -0.8
526,531 - ABIE40_RS22010 0.29 -1.8
526,531 - ABIE40_RS22010 0.29 +0.7
526,680 + ABIE40_RS22010 0.50 +3.5
526,681 - ABIE40_RS22010 0.50 +0.3
526,681 - ABIE40_RS22010 0.50 -1.4
526,858 - ABIE40_RS22010 0.74 +1.2
526,890 + ABIE40_RS22010 0.79 +1.2
526,891 - ABIE40_RS22010 0.79 -0.2
526,891 - ABIE40_RS22010 0.79 +1.6
526,891 - ABIE40_RS22010 0.79 +1.0
526,899 + ABIE40_RS22010 0.80 -2.5
526,899 + ABIE40_RS22010 0.80 +0.6
526,900 - ABIE40_RS22010 0.80 -2.0
526,900 - ABIE40_RS22010 0.80 -1.7
527,007 + -3.3
527,007 + +0.9
527,007 + -1.3
527,008 - +1.8
527,295 + ABIE40_RS22015 0.43 +1.5
527,295 + ABIE40_RS22015 0.43 -0.9
527,295 + ABIE40_RS22015 0.43 -1.1
527,316 + ABIE40_RS22015 0.47 +2.4
527,316 + ABIE40_RS22015 0.47 +0.5
527,316 + ABIE40_RS22015 0.47 -3.8
527,317 - ABIE40_RS22015 0.47 +2.7
527,317 - ABIE40_RS22015 0.47 +1.8
527,317 - ABIE40_RS22015 0.47 -0.5
527,317 - ABIE40_RS22015 0.47 -0.4
527,317 - ABIE40_RS22015 0.47 -3.1
527,319 - ABIE40_RS22015 0.48 -1.5
527,351 + ABIE40_RS22015 0.55 +1.2
527,351 + ABIE40_RS22015 0.55 +0.2
527,351 + ABIE40_RS22015 0.55 +2.4
527,351 + ABIE40_RS22015 0.55 +1.0
527,351 + ABIE40_RS22015 0.55 +1.0
527,351 + ABIE40_RS22015 0.55 -0.1
527,351 + ABIE40_RS22015 0.55 -0.5
527,351 + ABIE40_RS22015 0.55 +1.2
527,351 + ABIE40_RS22015 0.55 -0.1
527,351 + ABIE40_RS22015 0.55 -0.4
527,351 + ABIE40_RS22015 0.55 -1.3
527,351 + ABIE40_RS22015 0.55 +0.9
527,351 + ABIE40_RS22015 0.55 -3.1
527,352 - ABIE40_RS22015 0.55 -2.6
527,352 - ABIE40_RS22015 0.55 -3.2
527,352 - ABIE40_RS22015 0.55 -1.6
527,352 - ABIE40_RS22015 0.55 -0.4
527,352 - ABIE40_RS22015 0.55 +0.9
527,352 - ABIE40_RS22015 0.55 -0.1
527,352 - ABIE40_RS22015 0.55 +1.3
527,352 - ABIE40_RS22015 0.55 +0.0
527,352 - ABIE40_RS22015 0.55 +1.9
527,352 - ABIE40_RS22015 0.55 -0.4
527,352 - ABIE40_RS22015 0.55 -0.1
527,352 - ABIE40_RS22015 0.55 +0.3
527,352 - ABIE40_RS22015 0.55 +1.3
527,352 - ABIE40_RS22015 0.55 -3.0
527,352 - ABIE40_RS22015 0.55 -0.1
527,352 - ABIE40_RS22015 0.55 +1.4
527,352 - ABIE40_RS22015 0.55 +0.6
527,352 - ABIE40_RS22015 0.55 -1.4
527,352 - ABIE40_RS22015 0.55 +1.6
527,361 + ABIE40_RS22015 0.57 -1.0
527,361 + ABIE40_RS22015 0.57 +0.1
527,361 + ABIE40_RS22015 0.57 +1.9
527,361 + ABIE40_RS22015 0.57 +0.6
527,361 + ABIE40_RS22015 0.57 +0.1
527,362 - ABIE40_RS22015 0.57 -0.4
527,395 + ABIE40_RS22015 0.64 +0.2
527,395 + ABIE40_RS22015 0.64 -1.3
527,403 + ABIE40_RS22015 0.66 -0.6
527,403 + ABIE40_RS22015 0.66 -0.3
527,403 + ABIE40_RS22015 0.66 +0.0
527,404 - ABIE40_RS22015 0.66 -1.4
527,404 - ABIE40_RS22015 0.66 +0.6
527,405 + ABIE40_RS22015 0.66 -1.9
527,406 - ABIE40_RS22015 0.66 +2.3
527,406 - ABIE40_RS22015 0.66 -1.3
527,406 - ABIE40_RS22015 0.66 +1.8
527,406 - ABIE40_RS22015 0.66 -2.5
527,470 + ABIE40_RS22015 0.80 -2.7
527,470 + ABIE40_RS22015 0.80 -0.4
527,471 - ABIE40_RS22015 0.80 -2.6
527,562 + +1.9
527,563 - -1.8
527,593 + -3.8
527,594 - -0.1
527,594 - -0.8
527,698 + -1.5
527,755 + ABIE40_RS22020 0.17 +0.4
527,755 + ABIE40_RS22020 0.17 +1.4
527,755 + ABIE40_RS22020 0.17 +1.2
527,755 + ABIE40_RS22020 0.17 +0.7
527,756 - ABIE40_RS22020 0.17 -1.8
527,756 - ABIE40_RS22020 0.17 +0.2
527,756 - ABIE40_RS22020 0.17 +2.2
527,756 - ABIE40_RS22020 0.17 +2.2
527,757 + ABIE40_RS22020 0.17 +3.8
527,757 + ABIE40_RS22020 0.17 -1.9
527,758 - ABIE40_RS22020 0.17 -2.3
527,758 - ABIE40_RS22020 0.17 -3.9
527,758 - ABIE40_RS22020 0.17 +0.8
527,758 - ABIE40_RS22020 0.17 +0.6
527,851 + ABIE40_RS22020 0.29 +0.2
527,852 - ABIE40_RS22020 0.29 -1.9
527,852 - ABIE40_RS22020 0.29 +0.1
527,852 - ABIE40_RS22020 0.29 -2.3
527,852 - ABIE40_RS22020 0.29 +1.1
527,852 - ABIE40_RS22020 0.29 -2.3

Or see this region's nucleotide sequence