Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21970

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21960 and ABIE40_RS21965 are separated by 58 nucleotidesABIE40_RS21965 and ABIE40_RS21970 are separated by 76 nucleotidesABIE40_RS21970 and ABIE40_RS21975 are separated by 128 nucleotides ABIE40_RS21960: ABIE40_RS21960 - Gfo/Idh/MocA family oxidoreductase, at 517,720 to 518,817 _RS21960 ABIE40_RS21965: ABIE40_RS21965 - FadR/GntR family transcriptional regulator, at 518,876 to 519,646 _RS21965 ABIE40_RS21970: ABIE40_RS21970 - cell wall hydrolase, at 519,723 to 520,754 _RS21970 ABIE40_RS21975: ABIE40_RS21975 - LysR substrate-binding domain-containing protein, at 520,883 to 521,851 _RS21975 Position (kb) 519 520 521Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 518.850 kb on - strandat 518.850 kb on - strandat 519.248 kb on + strand, within ABIE40_RS21965at 519.248 kb on + strand, within ABIE40_RS21965at 519.248 kb on + strand, within ABIE40_RS21965at 519.249 kb on - strand, within ABIE40_RS21965at 519.462 kb on + strand, within ABIE40_RS21965at 519.462 kb on + strand, within ABIE40_RS21965at 519.533 kb on + strand, within ABIE40_RS21965at 519.533 kb on + strand, within ABIE40_RS21965at 519.534 kb on - strand, within ABIE40_RS21965at 519.661 kb on + strandat 519.661 kb on + strandat 519.661 kb on + strandat 519.661 kb on + strandat 519.662 kb on - strandat 519.662 kb on - strandat 519.662 kb on - strandat 519.662 kb on - strandat 519.724 kb on + strandat 519.769 kb on + strandat 519.769 kb on + strandat 519.769 kb on + strandat 519.770 kb on - strandat 519.770 kb on - strandat 520.049 kb on + strand, within ABIE40_RS21970at 520.049 kb on + strand, within ABIE40_RS21970at 520.049 kb on + strand, within ABIE40_RS21970at 520.049 kb on + strand, within ABIE40_RS21970at 520.049 kb on + strand, within ABIE40_RS21970at 520.049 kb on + strand, within ABIE40_RS21970at 520.050 kb on - strand, within ABIE40_RS21970at 520.050 kb on - strand, within ABIE40_RS21970at 520.050 kb on - strand, within ABIE40_RS21970at 520.050 kb on - strand, within ABIE40_RS21970at 520.052 kb on - strand, within ABIE40_RS21970at 520.052 kb on - strand, within ABIE40_RS21970at 520.124 kb on + strand, within ABIE40_RS21970at 520.124 kb on + strand, within ABIE40_RS21970at 520.124 kb on + strand, within ABIE40_RS21970at 520.124 kb on + strand, within ABIE40_RS21970at 520.125 kb on - strand, within ABIE40_RS21970at 520.126 kb on + strand, within ABIE40_RS21970at 520.127 kb on - strand, within ABIE40_RS21970at 520.127 kb on - strand, within ABIE40_RS21970at 520.180 kb on + strand, within ABIE40_RS21970at 520.180 kb on + strand, within ABIE40_RS21970at 520.180 kb on + strand, within ABIE40_RS21970at 520.180 kb on + strand, within ABIE40_RS21970at 520.180 kb on + strand, within ABIE40_RS21970at 520.181 kb on - strand, within ABIE40_RS21970at 520.181 kb on - strand, within ABIE40_RS21970at 520.181 kb on - strand, within ABIE40_RS21970at 520.181 kb on - strand, within ABIE40_RS21970at 520.181 kb on - strand, within ABIE40_RS21970at 520.198 kb on + strand, within ABIE40_RS21970at 520.199 kb on - strand, within ABIE40_RS21970at 520.199 kb on - strand, within ABIE40_RS21970at 520.199 kb on - strand, within ABIE40_RS21970at 520.199 kb on - strand, within ABIE40_RS21970at 520.199 kb on - strand, within ABIE40_RS21970at 520.253 kb on - strand, within ABIE40_RS21970at 520.253 kb on - strand, within ABIE40_RS21970at 520.282 kb on + strand, within ABIE40_RS21970at 520.282 kb on + strand, within ABIE40_RS21970at 520.282 kb on + strand, within ABIE40_RS21970at 520.282 kb on + strand, within ABIE40_RS21970at 520.282 kb on + strand, within ABIE40_RS21970at 520.282 kb on + strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.283 kb on - strand, within ABIE40_RS21970at 520.297 kb on + strand, within ABIE40_RS21970at 520.518 kb on - strand, within ABIE40_RS21970at 520.529 kb on + strand, within ABIE40_RS21970at 520.529 kb on + strand, within ABIE40_RS21970at 520.530 kb on - strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.531 kb on + strand, within ABIE40_RS21970at 520.532 kb on - strand, within ABIE40_RS21970at 520.532 kb on - strand, within ABIE40_RS21970at 520.532 kb on - strand, within ABIE40_RS21970at 520.532 kb on - strand, within ABIE40_RS21970at 520.532 kb on - strand, within ABIE40_RS21970at 520.564 kb on + strand, within ABIE40_RS21970at 520.603 kb on + strand, within ABIE40_RS21970at 520.603 kb on + strand, within ABIE40_RS21970at 520.603 kb on + strand, within ABIE40_RS21970at 520.603 kb on + strand, within ABIE40_RS21970at 520.604 kb on - strand, within ABIE40_RS21970at 520.604 kb on - strand, within ABIE40_RS21970at 520.604 kb on - strand, within ABIE40_RS21970at 520.609 kb on + strand, within ABIE40_RS21970at 520.609 kb on + strand, within ABIE40_RS21970at 520.610 kb on - strand, within ABIE40_RS21970at 520.610 kb on - strand, within ABIE40_RS21970at 520.775 kb on + strandat 520.811 kb on + strandat 520.811 kb on + strandat 520.859 kb on + strandat 520.884 kb on + strandat 520.946 kb on + strandat 521.238 kb on + strand, within ABIE40_RS21975at 521.238 kb on + strand, within ABIE40_RS21975at 521.239 kb on - strand, within ABIE40_RS21975at 521.239 kb on - strand, within ABIE40_RS21975at 521.239 kb on - strand, within ABIE40_RS21975at 521.251 kb on + strand, within ABIE40_RS21975at 521.316 kb on + strand, within ABIE40_RS21975at 521.316 kb on + strand, within ABIE40_RS21975at 521.316 kb on + strand, within ABIE40_RS21975at 521.400 kb on + strand, within ABIE40_RS21975at 521.400 kb on + strand, within ABIE40_RS21975at 521.557 kb on - strand, within ABIE40_RS21975

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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518,850 - -2.0
518,850 - +0.5
519,248 + ABIE40_RS21965 0.48 -1.3
519,248 + ABIE40_RS21965 0.48 -2.4
519,248 + ABIE40_RS21965 0.48 -0.0
519,249 - ABIE40_RS21965 0.48 -2.7
519,462 + ABIE40_RS21965 0.76 +0.8
519,462 + ABIE40_RS21965 0.76 +0.6
519,533 + ABIE40_RS21965 0.85 -0.4
519,533 + ABIE40_RS21965 0.85 -0.8
519,534 - ABIE40_RS21965 0.85 -2.5
519,661 + -0.1
519,661 + -3.1
519,661 + -0.8
519,661 + +0.2
519,662 - -0.5
519,662 - -0.2
519,662 - +1.3
519,662 - -1.1
519,724 + -0.1
519,769 + -2.5
519,769 + +0.1
519,769 + -2.3
519,770 - -3.3
519,770 - +2.7
520,049 + ABIE40_RS21970 0.32 -0.3
520,049 + ABIE40_RS21970 0.32 +0.6
520,049 + ABIE40_RS21970 0.32 +2.0
520,049 + ABIE40_RS21970 0.32 -2.2
520,049 + ABIE40_RS21970 0.32 -1.5
520,049 + ABIE40_RS21970 0.32 -2.7
520,050 - ABIE40_RS21970 0.32 +2.6
520,050 - ABIE40_RS21970 0.32 -2.6
520,050 - ABIE40_RS21970 0.32 +0.8
520,050 - ABIE40_RS21970 0.32 -3.0
520,052 - ABIE40_RS21970 0.32 -1.3
520,052 - ABIE40_RS21970 0.32 -0.5
520,124 + ABIE40_RS21970 0.39 -1.1
520,124 + ABIE40_RS21970 0.39 -0.6
520,124 + ABIE40_RS21970 0.39 -3.7
520,124 + ABIE40_RS21970 0.39 -1.1
520,125 - ABIE40_RS21970 0.39 -0.6
520,126 + ABIE40_RS21970 0.39 +2.2
520,127 - ABIE40_RS21970 0.39 -1.0
520,127 - ABIE40_RS21970 0.39 -0.6
520,180 + ABIE40_RS21970 0.44 -2.6
520,180 + ABIE40_RS21970 0.44 -0.6
520,180 + ABIE40_RS21970 0.44 +2.2
520,180 + ABIE40_RS21970 0.44 -3.2
520,180 + ABIE40_RS21970 0.44 -0.7
520,181 - ABIE40_RS21970 0.44 +0.1
520,181 - ABIE40_RS21970 0.44 +0.6
520,181 - ABIE40_RS21970 0.44 -2.3
520,181 - ABIE40_RS21970 0.44 -4.5
520,181 - ABIE40_RS21970 0.44 +0.5
520,198 + ABIE40_RS21970 0.46 -2.9
520,199 - ABIE40_RS21970 0.46 -2.6
520,199 - ABIE40_RS21970 0.46 +0.5
520,199 - ABIE40_RS21970 0.46 +1.3
520,199 - ABIE40_RS21970 0.46 -2.3
520,199 - ABIE40_RS21970 0.46 +1.6
520,253 - ABIE40_RS21970 0.51 -2.8
520,253 - ABIE40_RS21970 0.51 +0.1
520,282 + ABIE40_RS21970 0.54 -1.3
520,282 + ABIE40_RS21970 0.54 -3.1
520,282 + ABIE40_RS21970 0.54 -0.4
520,282 + ABIE40_RS21970 0.54 -0.6
520,282 + ABIE40_RS21970 0.54 -0.6
520,282 + ABIE40_RS21970 0.54 +1.8
520,283 - ABIE40_RS21970 0.54 -1.9
520,283 - ABIE40_RS21970 0.54 -0.8
520,283 - ABIE40_RS21970 0.54 -1.5
520,283 - ABIE40_RS21970 0.54 +1.1
520,283 - ABIE40_RS21970 0.54 -2.1
520,283 - ABIE40_RS21970 0.54 -2.4
520,283 - ABIE40_RS21970 0.54 -1.5
520,283 - ABIE40_RS21970 0.54 -2.8
520,283 - ABIE40_RS21970 0.54 -0.7
520,283 - ABIE40_RS21970 0.54 -0.8
520,283 - ABIE40_RS21970 0.54 +1.9
520,283 - ABIE40_RS21970 0.54 -1.6
520,283 - ABIE40_RS21970 0.54 +0.8
520,283 - ABIE40_RS21970 0.54 -1.1
520,297 + ABIE40_RS21970 0.56 -0.6
520,518 - ABIE40_RS21970 0.77 +0.2
520,529 + ABIE40_RS21970 0.78 +0.2
520,529 + ABIE40_RS21970 0.78 -0.1
520,530 - ABIE40_RS21970 0.78 -1.0
520,531 + ABIE40_RS21970 0.78 -0.3
520,531 + ABIE40_RS21970 0.78 -0.6
520,531 + ABIE40_RS21970 0.78 -1.0
520,531 + ABIE40_RS21970 0.78 +2.2
520,531 + ABIE40_RS21970 0.78 -0.8
520,531 + ABIE40_RS21970 0.78 +0.6
520,531 + ABIE40_RS21970 0.78 -0.6
520,531 + ABIE40_RS21970 0.78 +2.2
520,531 + ABIE40_RS21970 0.78 -2.1
520,532 - ABIE40_RS21970 0.78 +1.1
520,532 - ABIE40_RS21970 0.78 +3.2
520,532 - ABIE40_RS21970 0.78 +1.2
520,532 - ABIE40_RS21970 0.78 -1.7
520,532 - ABIE40_RS21970 0.78 +0.7
520,564 + ABIE40_RS21970 0.81 -2.2
520,603 + ABIE40_RS21970 0.85 +1.2
520,603 + ABIE40_RS21970 0.85 +2.2
520,603 + ABIE40_RS21970 0.85 +2.2
520,603 + ABIE40_RS21970 0.85 -0.1
520,604 - ABIE40_RS21970 0.85 +1.5
520,604 - ABIE40_RS21970 0.85 +0.2
520,604 - ABIE40_RS21970 0.85 -0.8
520,609 + ABIE40_RS21970 0.86 -0.4
520,609 + ABIE40_RS21970 0.86 -2.4
520,610 - ABIE40_RS21970 0.86 +2.2
520,610 - ABIE40_RS21970 0.86 +1.2
520,775 + -1.3
520,811 + -1.6
520,811 + -1.9
520,859 + -2.6
520,884 + -2.1
520,946 + -1.0
521,238 + ABIE40_RS21975 0.37 -2.5
521,238 + ABIE40_RS21975 0.37 +0.6
521,239 - ABIE40_RS21975 0.37 +0.6
521,239 - ABIE40_RS21975 0.37 -2.0
521,239 - ABIE40_RS21975 0.37 +0.7
521,251 + ABIE40_RS21975 0.38 -2.5
521,316 + ABIE40_RS21975 0.45 +3.2
521,316 + ABIE40_RS21975 0.45 -1.7
521,316 + ABIE40_RS21975 0.45 +0.2
521,400 + ABIE40_RS21975 0.53 +1.7
521,400 + ABIE40_RS21975 0.53 -1.4
521,557 - ABIE40_RS21975 0.70 -2.2

Or see this region's nucleotide sequence