Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16805

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS16800 and ABIE40_RS16805 are separated by 1 nucleotidesABIE40_RS16805 and ABIE40_RS16810 are separated by 66 nucleotides ABIE40_RS16800: ABIE40_RS16800 - GAF domain-containing protein, at 3,348,670 to 3,350,676 _RS16800 ABIE40_RS16805: ABIE40_RS16805 - response regulator, at 3,350,678 to 3,351,061 _RS16805 ABIE40_RS16810: ABIE40_RS16810 - xylose isomerase, at 3,351,128 to 3,352,438 _RS16810 Position (kb) 3350 3351 3352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3349.745 kb on + strand, within ABIE40_RS16800at 3349.745 kb on + strand, within ABIE40_RS16800at 3349.746 kb on - strand, within ABIE40_RS16800at 3349.813 kb on + strand, within ABIE40_RS16800at 3349.999 kb on + strand, within ABIE40_RS16800at 3350.049 kb on + strand, within ABIE40_RS16800at 3350.050 kb on - strand, within ABIE40_RS16800at 3350.243 kb on + strand, within ABIE40_RS16800at 3350.243 kb on + strand, within ABIE40_RS16800at 3350.243 kb on + strand, within ABIE40_RS16800at 3350.244 kb on - strand, within ABIE40_RS16800at 3350.244 kb on - strand, within ABIE40_RS16800at 3350.244 kb on - strand, within ABIE40_RS16800at 3350.244 kb on - strand, within ABIE40_RS16800at 3350.419 kb on + strand, within ABIE40_RS16800at 3350.420 kb on - strand, within ABIE40_RS16800at 3350.420 kb on - strand, within ABIE40_RS16800at 3350.420 kb on - strand, within ABIE40_RS16800at 3350.420 kb on - strand, within ABIE40_RS16800at 3350.452 kb on + strand, within ABIE40_RS16800at 3350.452 kb on + strand, within ABIE40_RS16800at 3350.453 kb on - strand, within ABIE40_RS16800at 3350.453 kb on - strand, within ABIE40_RS16800at 3350.453 kb on - strand, within ABIE40_RS16800at 3350.690 kb on + strandat 3350.690 kb on + strandat 3350.690 kb on + strandat 3350.691 kb on - strandat 3350.737 kb on - strand, within ABIE40_RS16805at 3350.815 kb on - strand, within ABIE40_RS16805at 3350.815 kb on - strand, within ABIE40_RS16805at 3350.866 kb on + strand, within ABIE40_RS16805at 3350.866 kb on + strand, within ABIE40_RS16805at 3350.867 kb on - strand, within ABIE40_RS16805at 3350.882 kb on + strand, within ABIE40_RS16805at 3351.008 kb on + strand, within ABIE40_RS16805at 3351.008 kb on + strand, within ABIE40_RS16805at 3351.109 kb on + strandat 3351.110 kb on - strandat 3351.136 kb on - strandat 3351.235 kb on - strandat 3351.474 kb on + strand, within ABIE40_RS16810at 3351.475 kb on - strand, within ABIE40_RS16810at 3351.477 kb on + strand, within ABIE40_RS16810at 3351.478 kb on - strand, within ABIE40_RS16810at 3351.691 kb on - strand, within ABIE40_RS16810at 3351.691 kb on - strand, within ABIE40_RS16810at 3351.709 kb on - strand, within ABIE40_RS16810at 3351.714 kb on + strand, within ABIE40_RS16810at 3351.714 kb on + strand, within ABIE40_RS16810at 3351.715 kb on - strand, within ABIE40_RS16810at 3351.786 kb on + strand, within ABIE40_RS16810at 3351.786 kb on + strand, within ABIE40_RS16810at 3351.786 kb on + strand, within ABIE40_RS16810at 3351.787 kb on - strand, within ABIE40_RS16810at 3351.787 kb on - strand, within ABIE40_RS16810at 3351.888 kb on + strand, within ABIE40_RS16810at 3351.888 kb on + strand, within ABIE40_RS16810at 3351.888 kb on + strand, within ABIE40_RS16810at 3351.888 kb on + strand, within ABIE40_RS16810at 3351.888 kb on + strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.889 kb on - strand, within ABIE40_RS16810at 3351.993 kb on + strand, within ABIE40_RS16810at 3351.993 kb on + strand, within ABIE40_RS16810at 3351.994 kb on - strand, within ABIE40_RS16810at 3351.994 kb on - strand, within ABIE40_RS16810

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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3,349,745 + ABIE40_RS16800 0.54 -1.4
3,349,745 + ABIE40_RS16800 0.54 -1.7
3,349,746 - ABIE40_RS16800 0.54 -2.7
3,349,813 + ABIE40_RS16800 0.57 -3.3
3,349,999 + ABIE40_RS16800 0.66 +1.0
3,350,049 + ABIE40_RS16800 0.69 -3.4
3,350,050 - ABIE40_RS16800 0.69 -0.9
3,350,243 + ABIE40_RS16800 0.78 +0.4
3,350,243 + ABIE40_RS16800 0.78 -1.0
3,350,243 + ABIE40_RS16800 0.78 +2.1
3,350,244 - ABIE40_RS16800 0.78 +0.0
3,350,244 - ABIE40_RS16800 0.78 -0.7
3,350,244 - ABIE40_RS16800 0.78 -1.2
3,350,244 - ABIE40_RS16800 0.78 -0.9
3,350,419 + ABIE40_RS16800 0.87 +2.7
3,350,420 - ABIE40_RS16800 0.87 +2.1
3,350,420 - ABIE40_RS16800 0.87 -0.1
3,350,420 - ABIE40_RS16800 0.87 -0.0
3,350,420 - ABIE40_RS16800 0.87 -0.1
3,350,452 + ABIE40_RS16800 0.89 -0.7
3,350,452 + ABIE40_RS16800 0.89 +0.3
3,350,453 - ABIE40_RS16800 0.89 -0.2
3,350,453 - ABIE40_RS16800 0.89 -3.3
3,350,453 - ABIE40_RS16800 0.89 +0.5
3,350,690 + -1.0
3,350,690 + +0.6
3,350,690 + +1.6
3,350,691 - -3.3
3,350,737 - ABIE40_RS16805 0.15 +1.7
3,350,815 - ABIE40_RS16805 0.36 -0.4
3,350,815 - ABIE40_RS16805 0.36 -3.7
3,350,866 + ABIE40_RS16805 0.49 +1.8
3,350,866 + ABIE40_RS16805 0.49 -1.6
3,350,867 - ABIE40_RS16805 0.49 -1.3
3,350,882 + ABIE40_RS16805 0.53 +2.9
3,351,008 + ABIE40_RS16805 0.86 -2.6
3,351,008 + ABIE40_RS16805 0.86 +1.4
3,351,109 + +0.3
3,351,110 - +0.9
3,351,136 - +0.2
3,351,235 - +0.9
3,351,474 + ABIE40_RS16810 0.26 -3.0
3,351,475 - ABIE40_RS16810 0.26 +0.7
3,351,477 + ABIE40_RS16810 0.27 +0.5
3,351,478 - ABIE40_RS16810 0.27 +1.3
3,351,691 - ABIE40_RS16810 0.43 -3.4
3,351,691 - ABIE40_RS16810 0.43 +1.9
3,351,709 - ABIE40_RS16810 0.44 +0.5
3,351,714 + ABIE40_RS16810 0.45 -3.6
3,351,714 + ABIE40_RS16810 0.45 +1.3
3,351,715 - ABIE40_RS16810 0.45 +0.6
3,351,786 + ABIE40_RS16810 0.50 -0.5
3,351,786 + ABIE40_RS16810 0.50 +0.2
3,351,786 + ABIE40_RS16810 0.50 -2.0
3,351,787 - ABIE40_RS16810 0.50 -1.5
3,351,787 - ABIE40_RS16810 0.50 +0.8
3,351,888 + ABIE40_RS16810 0.58 +2.2
3,351,888 + ABIE40_RS16810 0.58 -1.2
3,351,888 + ABIE40_RS16810 0.58 +1.6
3,351,888 + ABIE40_RS16810 0.58 +1.1
3,351,888 + ABIE40_RS16810 0.58 +2.2
3,351,889 - ABIE40_RS16810 0.58 +0.2
3,351,889 - ABIE40_RS16810 0.58 +1.8
3,351,889 - ABIE40_RS16810 0.58 +0.5
3,351,889 - ABIE40_RS16810 0.58 +1.8
3,351,889 - ABIE40_RS16810 0.58 -3.3
3,351,889 - ABIE40_RS16810 0.58 -4.0
3,351,889 - ABIE40_RS16810 0.58 -1.2
3,351,889 - ABIE40_RS16810 0.58 -1.3
3,351,889 - ABIE40_RS16810 0.58 -2.4
3,351,889 - ABIE40_RS16810 0.58 +1.0
3,351,993 + ABIE40_RS16810 0.66 +2.2
3,351,993 + ABIE40_RS16810 0.66 +0.9
3,351,994 - ABIE40_RS16810 0.66 +0.3
3,351,994 - ABIE40_RS16810 0.66 -0.8

Or see this region's nucleotide sequence