Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05055 and ABIE40_RS05060 are separated by 287 nucleotides ABIE40_RS05060 and ABIE40_RS05065 are separated by 60 nucleotides
ABIE40_RS05055: ABIE40_RS05055 - ornithine cyclodeaminase family protein, at 987,475 to 988,425
_RS05055
ABIE40_RS05060: ABIE40_RS05060 - siderophore-interacting protein, at 988,713 to 989,477
_RS05060
ABIE40_RS05065: ABIE40_RS05065 - LysR family transcriptional regulator, at 989,538 to 990,392
_RS05065
Position (kb) 988
989
990 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 988.059 kb on + strand, within ABIE40_RS05055 at 988.059 kb on + strand, within ABIE40_RS05055 at 988.060 kb on - strand, within ABIE40_RS05055 at 988.213 kb on + strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.419 kb on + strand at 988.420 kb on - strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.459 kb on + strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.460 kb on - strand at 988.461 kb on + strand at 988.462 kb on - strand at 988.462 kb on - strand at 988.462 kb on - strand at 988.462 kb on - strand at 988.506 kb on + strand at 988.513 kb on + strand at 988.513 kb on + strand at 988.526 kb on + strand at 988.611 kb on - strand at 988.611 kb on - strand at 988.634 kb on + strand at 988.692 kb on + strand at 988.692 kb on + strand at 988.693 kb on - strand at 988.693 kb on - strand at 988.693 kb on - strand at 988.693 kb on - strand at 988.718 kb on + strand at 988.718 kb on + strand at 988.733 kb on + strand at 988.886 kb on + strand, within ABIE40_RS05060 at 988.886 kb on + strand, within ABIE40_RS05060 at 988.886 kb on + strand, within ABIE40_RS05060 at 988.887 kb on - strand, within ABIE40_RS05060 at 988.887 kb on - strand, within ABIE40_RS05060 at 988.887 kb on - strand, within ABIE40_RS05060 at 988.887 kb on - strand, within ABIE40_RS05060 at 988.936 kb on - strand, within ABIE40_RS05060 at 988.936 kb on - strand, within ABIE40_RS05060 at 988.937 kb on + strand, within ABIE40_RS05060 at 988.937 kb on + strand, within ABIE40_RS05060 at 988.938 kb on - strand, within ABIE40_RS05060 at 988.938 kb on - strand, within ABIE40_RS05060 at 988.950 kb on + strand, within ABIE40_RS05060 at 989.147 kb on + strand, within ABIE40_RS05060 at 989.382 kb on + strand, within ABIE40_RS05060 at 989.383 kb on - strand, within ABIE40_RS05060 at 989.383 kb on - strand, within ABIE40_RS05060 at 989.456 kb on + strand at 989.759 kb on + strand, within ABIE40_RS05065 at 989.759 kb on + strand, within ABIE40_RS05065 at 989.760 kb on - strand, within ABIE40_RS05065 at 989.760 kb on - strand, within ABIE40_RS05065 at 989.760 kb on - strand, within ABIE40_RS05065 at 989.761 kb on + strand, within ABIE40_RS05065 at 989.762 kb on - strand, within ABIE40_RS05065 at 989.762 kb on - strand, within ABIE40_RS05065 at 989.762 kb on - strand, within ABIE40_RS05065 at 989.819 kb on - strand, within ABIE40_RS05065 at 990.015 kb on - strand, within ABIE40_RS05065 at 990.178 kb on + strand, within ABIE40_RS05065 at 990.178 kb on + strand, within ABIE40_RS05065 at 990.178 kb on + strand, within ABIE40_RS05065 at 990.178 kb on + strand, within ABIE40_RS05065 at 990.179 kb on - strand, within ABIE40_RS05065 at 990.179 kb on - strand, within ABIE40_RS05065 at 990.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 988,059 + ABIE40_RS05055 0.61 -1.5 988,059 + ABIE40_RS05055 0.61 +1.1 988,060 - ABIE40_RS05055 0.62 -2.6 988,213 + ABIE40_RS05055 0.78 -0.1 988,214 - ABIE40_RS05055 0.78 +1.1 988,214 - ABIE40_RS05055 0.78 -0.4 988,214 - ABIE40_RS05055 0.78 +5.6 988,214 - ABIE40_RS05055 0.78 -0.1 988,214 - ABIE40_RS05055 0.78 -1.8 988,214 - ABIE40_RS05055 0.78 +0.2 988,214 - ABIE40_RS05055 0.78 -1.2 988,214 - ABIE40_RS05055 0.78 +0.7 988,214 - ABIE40_RS05055 0.78 +0.2 988,419 + +0.8 988,420 - -1.2 988,459 + -1.2 988,459 + -0.5 988,459 + -1.8 988,459 + -0.1 988,459 + +1.1 988,459 + +1.3 988,459 + +0.5 988,459 + -1.1 988,459 + +2.2 988,459 + +1.2 988,460 - -1.9 988,460 - +0.7 988,460 - +1.7 988,460 - -1.5 988,460 - +0.7 988,460 - +1.0 988,460 - -1.4 988,460 - -2.6 988,460 - +0.9 988,460 - -1.5 988,460 - +1.3 988,460 - +1.0 988,460 - -0.9 988,460 - -4.1 988,460 - -0.6 988,460 - -1.7 988,461 + -1.3 988,462 - +0.4 988,462 - +0.5 988,462 - -3.8 988,462 - +1.2 988,506 + -2.6 988,513 + -3.6 988,513 + -2.7 988,526 + +0.0 988,611 - -1.8 988,611 - -0.9 988,634 + +1.6 988,692 + -3.0 988,692 + -0.9 988,693 - -3.3 988,693 - -0.6 988,693 - -0.2 988,693 - +1.2 988,718 + +2.3 988,718 + +0.8 988,733 + +0.3 988,886 + ABIE40_RS05060 0.23 +1.7 988,886 + ABIE40_RS05060 0.23 +1.2 988,886 + ABIE40_RS05060 0.23 -0.3 988,887 - ABIE40_RS05060 0.23 +1.7 988,887 - ABIE40_RS05060 0.23 +0.2 988,887 - ABIE40_RS05060 0.23 -1.1 988,887 - ABIE40_RS05060 0.23 -0.7 988,936 - ABIE40_RS05060 0.29 -1.3 988,936 - ABIE40_RS05060 0.29 +0.4 988,937 + ABIE40_RS05060 0.29 -1.5 988,937 + ABIE40_RS05060 0.29 -0.3 988,938 - ABIE40_RS05060 0.29 -3.0 988,938 - ABIE40_RS05060 0.29 -0.3 988,950 + ABIE40_RS05060 0.31 -0.1 989,147 + ABIE40_RS05060 0.57 +0.1 989,382 + ABIE40_RS05060 0.87 +1.2 989,383 - ABIE40_RS05060 0.88 -2.6 989,383 - ABIE40_RS05060 0.88 +0.8 989,456 + -2.5 989,759 + ABIE40_RS05065 0.26 +0.9 989,759 + ABIE40_RS05065 0.26 -3.0 989,760 - ABIE40_RS05065 0.26 +0.2 989,760 - ABIE40_RS05065 0.26 +1.4 989,760 - ABIE40_RS05065 0.26 +0.7 989,761 + ABIE40_RS05065 0.26 -2.4 989,762 - ABIE40_RS05065 0.26 +0.2 989,762 - ABIE40_RS05065 0.26 -0.6 989,762 - ABIE40_RS05065 0.26 -0.2 989,819 - ABIE40_RS05065 0.33 +1.1 990,015 - ABIE40_RS05065 0.56 +2.7 990,178 + ABIE40_RS05065 0.75 -1.9 990,178 + ABIE40_RS05065 0.75 +0.4 990,178 + ABIE40_RS05065 0.75 +2.2 990,178 + ABIE40_RS05065 0.75 -0.6 990,179 - ABIE40_RS05065 0.75 +1.0 990,179 - ABIE40_RS05065 0.75 -0.3 990,339 - +1.4
Or see this region's nucleotide sequence