Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05010

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS05005 and ABIE40_RS05010 overlap by 4 nucleotidesABIE40_RS05010 and ABIE40_RS05015 overlap by 4 nucleotidesABIE40_RS05015 and ABIE40_RS05020 overlap by 4 nucleotides ABIE40_RS05005: ABIE40_RS05005 - Na+/H+ antiporter subunit D, at 978,837 to 980,390 _RS05005 ABIE40_RS05010: ABIE40_RS05010 - Na+/H+ antiporter subunit E, at 980,387 to 980,860 _RS05010 ABIE40_RS05015: ABIE40_RS05015 - cation:proton antiporter, at 980,857 to 981,219 _RS05015 ABIE40_RS05020: ABIE40_RS05020 - monovalent cation/H(+) antiporter subunit G, at 981,216 to 981,548 _RS05020 Position (kb) 980 981Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 979.387 kb on - strand, within ABIE40_RS05005at 979.387 kb on - strand, within ABIE40_RS05005at 979.387 kb on - strand, within ABIE40_RS05005at 979.387 kb on - strand, within ABIE40_RS05005at 979.387 kb on - strand, within ABIE40_RS05005at 979.387 kb on - strand, within ABIE40_RS05005at 979.437 kb on + strand, within ABIE40_RS05005at 979.438 kb on - strand, within ABIE40_RS05005at 979.443 kb on + strand, within ABIE40_RS05005at 979.443 kb on + strand, within ABIE40_RS05005at 979.443 kb on + strand, within ABIE40_RS05005at 979.443 kb on + strand, within ABIE40_RS05005at 979.444 kb on - strand, within ABIE40_RS05005at 979.444 kb on - strand, within ABIE40_RS05005at 979.444 kb on - strand, within ABIE40_RS05005at 979.444 kb on - strand, within ABIE40_RS05005at 979.599 kb on + strand, within ABIE40_RS05005at 979.599 kb on + strand, within ABIE40_RS05005at 979.599 kb on + strand, within ABIE40_RS05005at 979.600 kb on - strand, within ABIE40_RS05005at 979.662 kb on + strand, within ABIE40_RS05005at 979.662 kb on + strand, within ABIE40_RS05005at 979.662 kb on + strand, within ABIE40_RS05005at 979.662 kb on + strand, within ABIE40_RS05005at 979.663 kb on - strand, within ABIE40_RS05005at 979.806 kb on + strand, within ABIE40_RS05005at 979.806 kb on + strand, within ABIE40_RS05005at 979.806 kb on + strand, within ABIE40_RS05005at 979.807 kb on - strand, within ABIE40_RS05005at 979.807 kb on - strand, within ABIE40_RS05005at 979.830 kb on - strand, within ABIE40_RS05005at 979.834 kb on - strand, within ABIE40_RS05005at 979.846 kb on + strand, within ABIE40_RS05005at 979.887 kb on + strand, within ABIE40_RS05005at 979.887 kb on + strand, within ABIE40_RS05005at 979.887 kb on + strand, within ABIE40_RS05005at 979.887 kb on + strand, within ABIE40_RS05005at 979.887 kb on + strand, within ABIE40_RS05005at 979.887 kb on + strand, within ABIE40_RS05005at 979.888 kb on - strand, within ABIE40_RS05005at 979.923 kb on + strand, within ABIE40_RS05005at 979.923 kb on + strand, within ABIE40_RS05005at 979.924 kb on - strand, within ABIE40_RS05005at 979.924 kb on - strand, within ABIE40_RS05005at 979.989 kb on + strand, within ABIE40_RS05005at 979.990 kb on - strand, within ABIE40_RS05005at 979.990 kb on - strand, within ABIE40_RS05005at 980.191 kb on - strand, within ABIE40_RS05005at 980.355 kb on + strandat 980.355 kb on + strandat 980.355 kb on + strandat 980.355 kb on + strandat 980.355 kb on + strandat 980.355 kb on + strandat 980.356 kb on - strandat 980.356 kb on - strandat 980.356 kb on - strandat 980.356 kb on - strandat 980.357 kb on + strandat 980.357 kb on + strandat 980.531 kb on + strand, within ABIE40_RS05010at 980.531 kb on + strand, within ABIE40_RS05010at 980.532 kb on - strand, within ABIE40_RS05010at 980.532 kb on - strand, within ABIE40_RS05010at 980.639 kb on - strand, within ABIE40_RS05010at 980.768 kb on + strand, within ABIE40_RS05010at 980.768 kb on + strand, within ABIE40_RS05010at 980.769 kb on - strand, within ABIE40_RS05010at 980.769 kb on - strand, within ABIE40_RS05010at 980.769 kb on - strand, within ABIE40_RS05010at 980.769 kb on - strand, within ABIE40_RS05010at 980.769 kb on - strand, within ABIE40_RS05010at 980.769 kb on - strand, within ABIE40_RS05010at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.988 kb on + strand, within ABIE40_RS05015at 980.989 kb on - strand, within ABIE40_RS05015at 980.989 kb on - strand, within ABIE40_RS05015at 980.989 kb on - strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.052 kb on + strand, within ABIE40_RS05015at 981.053 kb on - strand, within ABIE40_RS05015at 981.225 kb on + strandat 981.225 kb on + strandat 981.225 kb on + strandat 981.226 kb on - strandat 981.226 kb on - strandat 981.390 kb on + strand, within ABIE40_RS05020at 981.390 kb on + strand, within ABIE40_RS05020at 981.390 kb on + strand, within ABIE40_RS05020at 981.390 kb on + strand, within ABIE40_RS05020at 981.391 kb on - strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.445 kb on + strand, within ABIE40_RS05020at 981.446 kb on - strand, within ABIE40_RS05020at 981.446 kb on - strand, within ABIE40_RS05020at 981.523 kb on + strandat 981.524 kb on - strandat 981.524 kb on - strandat 981.555 kb on - strandat 981.608 kb on - strandat 981.608 kb on - strandat 981.780 kb on + strandat 981.780 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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979,387 - ABIE40_RS05005 0.35 +0.8
979,387 - ABIE40_RS05005 0.35 +0.4
979,387 - ABIE40_RS05005 0.35 +0.2
979,387 - ABIE40_RS05005 0.35 -3.5
979,387 - ABIE40_RS05005 0.35 -1.0
979,387 - ABIE40_RS05005 0.35 -0.4
979,437 + ABIE40_RS05005 0.39 -1.6
979,438 - ABIE40_RS05005 0.39 +0.2
979,443 + ABIE40_RS05005 0.39 +0.5
979,443 + ABIE40_RS05005 0.39 -2.9
979,443 + ABIE40_RS05005 0.39 -1.1
979,443 + ABIE40_RS05005 0.39 +1.0
979,444 - ABIE40_RS05005 0.39 -4.2
979,444 - ABIE40_RS05005 0.39 -1.8
979,444 - ABIE40_RS05005 0.39 -2.3
979,444 - ABIE40_RS05005 0.39 +1.2
979,599 + ABIE40_RS05005 0.49 +0.6
979,599 + ABIE40_RS05005 0.49 -3.0
979,599 + ABIE40_RS05005 0.49 +0.1
979,600 - ABIE40_RS05005 0.49 -1.5
979,662 + ABIE40_RS05005 0.53 +0.4
979,662 + ABIE40_RS05005 0.53 -0.3
979,662 + ABIE40_RS05005 0.53 +0.7
979,662 + ABIE40_RS05005 0.53 +0.5
979,663 - ABIE40_RS05005 0.53 -0.3
979,806 + ABIE40_RS05005 0.62 -3.4
979,806 + ABIE40_RS05005 0.62 -0.8
979,806 + ABIE40_RS05005 0.62 -0.4
979,807 - ABIE40_RS05005 0.62 -1.3
979,807 - ABIE40_RS05005 0.62 +0.6
979,830 - ABIE40_RS05005 0.64 +0.4
979,834 - ABIE40_RS05005 0.64 +2.4
979,846 + ABIE40_RS05005 0.65 -3.3
979,887 + ABIE40_RS05005 0.68 -1.7
979,887 + ABIE40_RS05005 0.68 -1.7
979,887 + ABIE40_RS05005 0.68 -0.5
979,887 + ABIE40_RS05005 0.68 -4.1
979,887 + ABIE40_RS05005 0.68 +1.9
979,887 + ABIE40_RS05005 0.68 -0.5
979,888 - ABIE40_RS05005 0.68 -1.5
979,923 + ABIE40_RS05005 0.70 -0.6
979,923 + ABIE40_RS05005 0.70 -2.1
979,924 - ABIE40_RS05005 0.70 -1.5
979,924 - ABIE40_RS05005 0.70 -2.6
979,989 + ABIE40_RS05005 0.74 -0.9
979,990 - ABIE40_RS05005 0.74 -2.6
979,990 - ABIE40_RS05005 0.74 -1.7
980,191 - ABIE40_RS05005 0.87 -0.2
980,355 + -1.9
980,355 + +0.5
980,355 + -0.1
980,355 + -0.6
980,355 + -1.2
980,355 + +4.2
980,356 - -0.6
980,356 - +0.7
980,356 - +0.9
980,356 - -0.3
980,357 + +1.3
980,357 + +0.2
980,531 + ABIE40_RS05010 0.30 +0.9
980,531 + ABIE40_RS05010 0.30 +0.4
980,532 - ABIE40_RS05010 0.31 +2.7
980,532 - ABIE40_RS05010 0.31 -0.2
980,639 - ABIE40_RS05010 0.53 -3.0
980,768 + ABIE40_RS05010 0.80 -2.7
980,768 + ABIE40_RS05010 0.80 -1.2
980,769 - ABIE40_RS05010 0.81 +0.6
980,769 - ABIE40_RS05010 0.81 +0.4
980,769 - ABIE40_RS05010 0.81 -1.8
980,769 - ABIE40_RS05010 0.81 -0.7
980,769 - ABIE40_RS05010 0.81 -2.1
980,769 - ABIE40_RS05010 0.81 -2.3
980,988 + ABIE40_RS05015 0.36 -1.6
980,988 + ABIE40_RS05015 0.36 +0.9
980,988 + ABIE40_RS05015 0.36 +0.3
980,988 + ABIE40_RS05015 0.36 -0.7
980,988 + ABIE40_RS05015 0.36 -1.8
980,989 - ABIE40_RS05015 0.36 -0.9
980,989 - ABIE40_RS05015 0.36 +1.0
980,989 - ABIE40_RS05015 0.36 +1.1
981,052 + ABIE40_RS05015 0.54 -2.7
981,052 + ABIE40_RS05015 0.54 +0.6
981,052 + ABIE40_RS05015 0.54 +0.7
981,052 + ABIE40_RS05015 0.54 +1.4
981,052 + ABIE40_RS05015 0.54 -0.6
981,053 - ABIE40_RS05015 0.54 -1.2
981,225 + +0.2
981,225 + +1.7
981,225 + -1.6
981,226 - -1.0
981,226 - -0.7
981,390 + ABIE40_RS05020 0.52 -0.7
981,390 + ABIE40_RS05020 0.52 -1.3
981,390 + ABIE40_RS05020 0.52 -1.1
981,390 + ABIE40_RS05020 0.52 -1.6
981,391 - ABIE40_RS05020 0.53 +0.0
981,445 + ABIE40_RS05020 0.69 +1.5
981,445 + ABIE40_RS05020 0.69 -2.0
981,445 + ABIE40_RS05020 0.69 -0.2
981,445 + ABIE40_RS05020 0.69 +0.9
981,445 + ABIE40_RS05020 0.69 -2.2
981,446 - ABIE40_RS05020 0.69 -0.6
981,446 - ABIE40_RS05020 0.69 +0.9
981,523 + +0.3
981,524 - -0.2
981,524 - -2.1
981,555 - +0.9
981,608 - -1.3
981,608 - +0.8
981,780 + -0.8
981,780 + -0.0

Or see this region's nucleotide sequence