Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03945 and ABIE40_RS03950 overlap by 4 nucleotides ABIE40_RS03950 and ABIE40_RS03955 are separated by 24 nucleotides ABIE40_RS03955 and ABIE40_RS03960 overlap by 1 nucleotides ABIE40_RS03960 and ABIE40_RS03965 are separated by 98 nucleotides
ABIE40_RS03945: ABIE40_RS03945 - acyl-CoA thioesterase, at 783,156 to 783,557
_RS03945
ABIE40_RS03950: ABIE40_RS03950 - biotin transporter BioY, at 783,554 to 784,117
_RS03950
ABIE40_RS03955: ABIE40_RS03955 - energy-coupling factor transporter transmembrane protein EcfT, at 784,142 to 784,750
_RS03955
ABIE40_RS03960: ABIE40_RS03960 - ABC transporter ATP-binding protein, at 784,750 to 785,424
_RS03960
ABIE40_RS03965: ABIE40_RS03965 - winged helix-turn-helix domain-containing protein, at 785,523 to 786,713
_RS03965
Position (kb) 784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 783.243 kb on + strand, within ABIE40_RS03945 at 783.244 kb on - strand, within ABIE40_RS03945 at 783.244 kb on - strand, within ABIE40_RS03945 at 783.244 kb on - strand, within ABIE40_RS03945 at 783.244 kb on - strand, within ABIE40_RS03945 at 783.252 kb on + strand, within ABIE40_RS03945 at 783.253 kb on - strand, within ABIE40_RS03945 at 783.253 kb on - strand, within ABIE40_RS03945 at 783.253 kb on - strand, within ABIE40_RS03945 at 783.315 kb on + strand, within ABIE40_RS03945 at 783.315 kb on + strand, within ABIE40_RS03945 at 783.315 kb on + strand, within ABIE40_RS03945 at 783.316 kb on - strand, within ABIE40_RS03945 at 783.316 kb on - strand, within ABIE40_RS03945 at 783.361 kb on - strand, within ABIE40_RS03945 at 783.361 kb on - strand, within ABIE40_RS03945 at 783.540 kb on + strand at 783.683 kb on - strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.702 kb on + strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.703 kb on - strand, within ABIE40_RS03950 at 783.720 kb on + strand, within ABIE40_RS03950 at 783.721 kb on - strand, within ABIE40_RS03950 at 783.721 kb on - strand, within ABIE40_RS03950 at 783.721 kb on - strand, within ABIE40_RS03950 at 783.721 kb on - strand, within ABIE40_RS03950 at 783.721 kb on - strand, within ABIE40_RS03950 at 784.118 kb on + strand at 784.118 kb on + strand at 784.118 kb on + strand at 784.290 kb on + strand, within ABIE40_RS03955 at 784.396 kb on + strand, within ABIE40_RS03955 at 784.547 kb on + strand, within ABIE40_RS03955 at 784.548 kb on - strand, within ABIE40_RS03955 at 784.599 kb on + strand, within ABIE40_RS03955 at 784.600 kb on - strand, within ABIE40_RS03955 at 784.600 kb on - strand, within ABIE40_RS03955 at 784.640 kb on + strand, within ABIE40_RS03955 at 784.640 kb on + strand, within ABIE40_RS03955 at 784.640 kb on + strand, within ABIE40_RS03955 at 784.640 kb on + strand, within ABIE40_RS03955 at 784.641 kb on - strand, within ABIE40_RS03955 at 784.641 kb on - strand, within ABIE40_RS03955 at 784.641 kb on - strand, within ABIE40_RS03955 at 784.737 kb on + strand at 784.737 kb on + strand at 784.737 kb on + strand at 784.737 kb on + strand at 784.738 kb on - strand at 784.738 kb on - strand at 784.738 kb on - strand at 784.870 kb on - strand, within ABIE40_RS03960 at 784.960 kb on + strand, within ABIE40_RS03960 at 784.961 kb on - strand, within ABIE40_RS03960 at 784.961 kb on - strand, within ABIE40_RS03960 at 784.961 kb on - strand, within ABIE40_RS03960 at 784.968 kb on + strand, within ABIE40_RS03960 at 784.969 kb on - strand, within ABIE40_RS03960 at 784.969 kb on - strand, within ABIE40_RS03960 at 785.388 kb on + strand at 785.390 kb on + strand at 785.390 kb on + strand at 785.390 kb on + strand at 785.390 kb on + strand at 785.391 kb on - strand at 785.391 kb on - strand at 785.391 kb on - strand at 785.457 kb on + strand at 785.457 kb on + strand at 785.457 kb on + strand at 785.457 kb on + strand at 785.458 kb on - strand at 785.458 kb on - strand at 785.458 kb on - strand at 785.458 kb on - strand at 785.458 kb on - strand at 785.459 kb on + strand at 785.460 kb on - strand at 785.493 kb on + strand at 785.494 kb on - strand at 785.511 kb on + strand at 785.512 kb on - strand at 785.512 kb on - strand at 785.512 kb on - strand at 785.512 kb on - strand at 785.660 kb on + strand, within ABIE40_RS03965
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 783,243 + ABIE40_RS03945 0.22 -1.6 783,244 - ABIE40_RS03945 0.22 +0.2 783,244 - ABIE40_RS03945 0.22 -0.9 783,244 - ABIE40_RS03945 0.22 -1.1 783,244 - ABIE40_RS03945 0.22 -1.4 783,252 + ABIE40_RS03945 0.24 -0.9 783,253 - ABIE40_RS03945 0.24 +0.8 783,253 - ABIE40_RS03945 0.24 -2.5 783,253 - ABIE40_RS03945 0.24 +1.0 783,315 + ABIE40_RS03945 0.40 -1.4 783,315 + ABIE40_RS03945 0.40 -1.4 783,315 + ABIE40_RS03945 0.40 +1.7 783,316 - ABIE40_RS03945 0.40 +1.1 783,316 - ABIE40_RS03945 0.40 +0.8 783,361 - ABIE40_RS03945 0.51 -0.0 783,361 - ABIE40_RS03945 0.51 +0.6 783,540 + -0.1 783,683 - ABIE40_RS03950 0.23 -0.3 783,702 + ABIE40_RS03950 0.26 +1.1 783,702 + ABIE40_RS03950 0.26 +1.9 783,702 + ABIE40_RS03950 0.26 +0.3 783,702 + ABIE40_RS03950 0.26 +2.9 783,702 + ABIE40_RS03950 0.26 +2.5 783,702 + ABIE40_RS03950 0.26 -4.7 783,702 + ABIE40_RS03950 0.26 +1.7 783,702 + ABIE40_RS03950 0.26 -2.3 783,702 + ABIE40_RS03950 0.26 +1.1 783,702 + ABIE40_RS03950 0.26 +1.4 783,703 - ABIE40_RS03950 0.26 -0.4 783,703 - ABIE40_RS03950 0.26 -0.5 783,703 - ABIE40_RS03950 0.26 +0.5 783,703 - ABIE40_RS03950 0.26 +0.9 783,703 - ABIE40_RS03950 0.26 +1.0 783,703 - ABIE40_RS03950 0.26 -0.6 783,703 - ABIE40_RS03950 0.26 -0.4 783,720 + ABIE40_RS03950 0.29 +1.6 783,721 - ABIE40_RS03950 0.30 +0.8 783,721 - ABIE40_RS03950 0.30 +1.5 783,721 - ABIE40_RS03950 0.30 -0.8 783,721 - ABIE40_RS03950 0.30 +0.4 783,721 - ABIE40_RS03950 0.30 -0.6 784,118 + -1.6 784,118 + +0.3 784,118 + -3.4 784,290 + ABIE40_RS03955 0.24 +1.2 784,396 + ABIE40_RS03955 0.42 -0.1 784,547 + ABIE40_RS03955 0.67 -0.6 784,548 - ABIE40_RS03955 0.67 -2.1 784,599 + ABIE40_RS03955 0.75 +0.6 784,600 - ABIE40_RS03955 0.75 +0.2 784,600 - ABIE40_RS03955 0.75 -3.2 784,640 + ABIE40_RS03955 0.82 -0.2 784,640 + ABIE40_RS03955 0.82 -0.1 784,640 + ABIE40_RS03955 0.82 +0.4 784,640 + ABIE40_RS03955 0.82 -1.7 784,641 - ABIE40_RS03955 0.82 +0.7 784,641 - ABIE40_RS03955 0.82 +0.0 784,641 - ABIE40_RS03955 0.82 +1.6 784,737 + -0.1 784,737 + -0.4 784,737 + +1.7 784,737 + -3.9 784,738 - +1.2 784,738 - -0.5 784,738 - +0.3 784,870 - ABIE40_RS03960 0.18 +1.3 784,960 + ABIE40_RS03960 0.31 -4.3 784,961 - ABIE40_RS03960 0.31 -1.5 784,961 - ABIE40_RS03960 0.31 +0.5 784,961 - ABIE40_RS03960 0.31 -0.3 784,968 + ABIE40_RS03960 0.32 -1.2 784,969 - ABIE40_RS03960 0.32 +1.2 784,969 - ABIE40_RS03960 0.32 -1.9 785,388 + -0.2 785,390 + +0.6 785,390 + +0.3 785,390 + -1.1 785,390 + -0.4 785,391 - +0.1 785,391 - +2.0 785,391 - -2.4 785,457 + -3.0 785,457 + +2.5 785,457 + +0.2 785,457 + +2.2 785,458 - -1.0 785,458 - +1.9 785,458 - -1.4 785,458 - -3.0 785,458 - +1.1 785,459 + +0.7 785,460 - +0.7 785,493 + -0.0 785,494 - -2.0 785,511 + -2.2 785,512 - -0.1 785,512 - -1.2 785,512 - -0.6 785,512 - +0.6 785,660 + ABIE40_RS03965 0.12 -2.6
Or see this region's nucleotide sequence