Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03855 and ABIE40_RS03860 are separated by 7 nucleotides ABIE40_RS03860 and ABIE40_RS03865 are separated by 214 nucleotides
ABIE40_RS03855: ABIE40_RS03855 - acyl-CoA dehydrogenase, at 764,179 to 765,957
_RS03855
ABIE40_RS03860: ABIE40_RS03860 - crotonase/enoyl-CoA hydratase family protein, at 765,965 to 766,717
_RS03860
ABIE40_RS03865: ABIE40_RS03865 - methyl-accepting chemotaxis protein, at 766,932 to 769,001
_RS03865
Position (kb) 765
766
767 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 764.977 kb on + strand, within ABIE40_RS03855 at 764.977 kb on + strand, within ABIE40_RS03855 at 764.977 kb on + strand, within ABIE40_RS03855 at 764.978 kb on - strand, within ABIE40_RS03855 at 764.978 kb on - strand, within ABIE40_RS03855 at 764.978 kb on - strand, within ABIE40_RS03855 at 764.978 kb on - strand, within ABIE40_RS03855 at 765.277 kb on + strand, within ABIE40_RS03855 at 765.277 kb on + strand, within ABIE40_RS03855 at 765.325 kb on - strand, within ABIE40_RS03855 at 765.496 kb on + strand, within ABIE40_RS03855 at 765.497 kb on - strand, within ABIE40_RS03855 at 765.497 kb on - strand, within ABIE40_RS03855 at 765.755 kb on - strand, within ABIE40_RS03855 at 765.791 kb on - strand at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.067 kb on + strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.068 kb on - strand, within ABIE40_RS03860 at 766.232 kb on + strand, within ABIE40_RS03860 at 766.233 kb on - strand, within ABIE40_RS03860 at 766.233 kb on - strand, within ABIE40_RS03860 at 766.233 kb on - strand, within ABIE40_RS03860 at 766.624 kb on + strand, within ABIE40_RS03860 at 766.634 kb on - strand, within ABIE40_RS03860 at 766.634 kb on - strand, within ABIE40_RS03860 at 766.634 kb on - strand, within ABIE40_RS03860 at 766.635 kb on + strand, within ABIE40_RS03860 at 766.635 kb on + strand, within ABIE40_RS03860 at 766.635 kb on + strand, within ABIE40_RS03860 at 766.635 kb on + strand, within ABIE40_RS03860 at 766.635 kb on + strand, within ABIE40_RS03860 at 766.715 kb on + strand at 766.715 kb on + strand at 766.719 kb on - strand at 766.719 kb on - strand at 766.720 kb on + strand at 766.720 kb on + strand at 766.737 kb on - strand at 766.747 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.770 kb on - strand at 766.772 kb on + strand at 766.897 kb on - strand at 766.897 kb on - strand at 766.897 kb on - strand at 766.992 kb on + strand at 766.992 kb on + strand at 766.993 kb on - strand at 766.993 kb on - strand at 766.993 kb on - strand at 766.995 kb on + strand at 766.995 kb on + strand at 766.995 kb on + strand at 766.995 kb on + strand at 766.996 kb on - strand at 766.996 kb on - strand at 767.211 kb on + strand, within ABIE40_RS03865 at 767.211 kb on + strand, within ABIE40_RS03865 at 767.211 kb on + strand, within ABIE40_RS03865 at 767.211 kb on + strand, within ABIE40_RS03865 at 767.212 kb on - strand, within ABIE40_RS03865 at 767.212 kb on - strand, within ABIE40_RS03865 at 767.212 kb on - strand, within ABIE40_RS03865 at 767.212 kb on - strand, within ABIE40_RS03865 at 767.271 kb on + strand, within ABIE40_RS03865 at 767.272 kb on - strand, within ABIE40_RS03865 at 767.272 kb on - strand, within ABIE40_RS03865 at 767.295 kb on + strand, within ABIE40_RS03865 at 767.296 kb on - strand, within ABIE40_RS03865 at 767.340 kb on + strand, within ABIE40_RS03865 at 767.340 kb on + strand, within ABIE40_RS03865 at 767.341 kb on - strand, within ABIE40_RS03865 at 767.341 kb on - strand, within ABIE40_RS03865 at 767.341 kb on - strand, within ABIE40_RS03865 at 767.679 kb on + strand, within ABIE40_RS03865 at 767.679 kb on + strand, within ABIE40_RS03865 at 767.680 kb on - strand, within ABIE40_RS03865 at 767.680 kb on - strand, within ABIE40_RS03865 at 767.680 kb on - strand, within ABIE40_RS03865 at 767.680 kb on - strand, within ABIE40_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 764,977 + ABIE40_RS03855 0.45 +0.2 764,977 + ABIE40_RS03855 0.45 +0.7 764,977 + ABIE40_RS03855 0.45 -0.1 764,978 - ABIE40_RS03855 0.45 -3.4 764,978 - ABIE40_RS03855 0.45 -1.2 764,978 - ABIE40_RS03855 0.45 +1.1 764,978 - ABIE40_RS03855 0.45 +2.8 765,277 + ABIE40_RS03855 0.62 -2.8 765,277 + ABIE40_RS03855 0.62 +0.2 765,325 - ABIE40_RS03855 0.64 +0.7 765,496 + ABIE40_RS03855 0.74 -3.4 765,497 - ABIE40_RS03855 0.74 +0.6 765,497 - ABIE40_RS03855 0.74 +1.2 765,755 - ABIE40_RS03855 0.89 +1.4 765,791 - -2.4 766,067 + ABIE40_RS03860 0.14 +0.2 766,067 + ABIE40_RS03860 0.14 +1.8 766,067 + ABIE40_RS03860 0.14 +2.0 766,067 + ABIE40_RS03860 0.14 +0.2 766,067 + ABIE40_RS03860 0.14 -0.2 766,067 + ABIE40_RS03860 0.14 +2.2 766,067 + ABIE40_RS03860 0.14 -0.1 766,067 + ABIE40_RS03860 0.14 -2.4 766,067 + ABIE40_RS03860 0.14 +0.9 766,067 + ABIE40_RS03860 0.14 -0.8 766,067 + ABIE40_RS03860 0.14 -3.7 766,067 + ABIE40_RS03860 0.14 -3.0 766,068 - ABIE40_RS03860 0.14 +0.8 766,068 - ABIE40_RS03860 0.14 -1.2 766,068 - ABIE40_RS03860 0.14 -0.4 766,068 - ABIE40_RS03860 0.14 -2.5 766,068 - ABIE40_RS03860 0.14 +0.9 766,068 - ABIE40_RS03860 0.14 +0.2 766,068 - ABIE40_RS03860 0.14 -0.4 766,068 - ABIE40_RS03860 0.14 -2.4 766,068 - ABIE40_RS03860 0.14 -1.5 766,068 - ABIE40_RS03860 0.14 -1.1 766,068 - ABIE40_RS03860 0.14 -2.8 766,068 - ABIE40_RS03860 0.14 +1.3 766,068 - ABIE40_RS03860 0.14 -1.9 766,068 - ABIE40_RS03860 0.14 -0.8 766,232 + ABIE40_RS03860 0.35 +2.2 766,233 - ABIE40_RS03860 0.36 +1.3 766,233 - ABIE40_RS03860 0.36 -0.8 766,233 - ABIE40_RS03860 0.36 -0.4 766,624 + ABIE40_RS03860 0.88 +0.0 766,634 - ABIE40_RS03860 0.89 -1.4 766,634 - ABIE40_RS03860 0.89 +1.1 766,634 - ABIE40_RS03860 0.89 +0.5 766,635 + ABIE40_RS03860 0.89 +0.4 766,635 + ABIE40_RS03860 0.89 -2.8 766,635 + ABIE40_RS03860 0.89 -0.3 766,635 + ABIE40_RS03860 0.89 -3.5 766,635 + ABIE40_RS03860 0.89 -0.8 766,715 + -1.1 766,715 + -0.6 766,719 - +2.4 766,719 - -1.1 766,720 + -1.8 766,720 + +1.9 766,737 - +1.2 766,747 + +0.2 766,769 + +0.7 766,769 + +0.4 766,769 + +1.2 766,769 + -1.2 766,770 - -0.1 766,772 + -3.1 766,897 - -1.2 766,897 - -2.5 766,897 - -1.6 766,992 + +1.0 766,992 + -0.6 766,993 - +1.4 766,993 - +0.2 766,993 - -1.8 766,995 + -0.6 766,995 + +0.2 766,995 + -2.2 766,995 + -0.1 766,996 - -0.6 766,996 - -0.4 767,211 + ABIE40_RS03865 0.13 +0.6 767,211 + ABIE40_RS03865 0.13 +0.2 767,211 + ABIE40_RS03865 0.13 +0.0 767,211 + ABIE40_RS03865 0.13 +1.2 767,212 - ABIE40_RS03865 0.14 +1.3 767,212 - ABIE40_RS03865 0.14 -2.1 767,212 - ABIE40_RS03865 0.14 -0.5 767,212 - ABIE40_RS03865 0.14 -3.7 767,271 + ABIE40_RS03865 0.16 -1.5 767,272 - ABIE40_RS03865 0.16 -1.6 767,272 - ABIE40_RS03865 0.16 +0.9 767,295 + ABIE40_RS03865 0.18 -1.9 767,296 - ABIE40_RS03865 0.18 -1.2 767,340 + ABIE40_RS03865 0.20 +1.0 767,340 + ABIE40_RS03865 0.20 -0.0 767,341 - ABIE40_RS03865 0.20 -0.8 767,341 - ABIE40_RS03865 0.20 +1.8 767,341 - ABIE40_RS03865 0.20 +0.6 767,679 + ABIE40_RS03865 0.36 -4.2 767,679 + ABIE40_RS03865 0.36 +0.7 767,680 - ABIE40_RS03865 0.36 -0.6 767,680 - ABIE40_RS03865 0.36 +0.7 767,680 - ABIE40_RS03865 0.36 +2.3 767,680 - ABIE40_RS03865 0.36 +0.9
Or see this region's nucleotide sequence