Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03445

Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03435 and ABIE40_RS03440 are separated by 7 nucleotidesABIE40_RS03440 and ABIE40_RS03445 are separated by 57 nucleotidesABIE40_RS03445 and ABIE40_RS03450 are separated by 1 nucleotides ABIE40_RS03435: ABIE40_RS03435 - exopolyphosphatase, at 682,255 to 683,799 _RS03435 ABIE40_RS03440: ABIE40_RS03440 - RlmE family RNA methyltransferase, at 683,807 to 684,526 _RS03440 ABIE40_RS03445: ABIE40_RS03445 - VOC family protein, at 684,584 to 684,967 _RS03445 ABIE40_RS03450: ABIE40_RS03450 - DHA2 family efflux MFS transporter permease subunit, at 684,969 to 686,393 _RS03450 Position (kb) 684 685Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 683.797 kb on + strandat 684.551 kb on - strandat 684.551 kb on - strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.583 kb on + strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.584 kb on - strandat 684.593 kb on + strandat 684.593 kb on + strandat 684.593 kb on + strandat 684.593 kb on + strandat 684.593 kb on + strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.594 kb on - strandat 684.638 kb on + strand, within ABIE40_RS03445at 684.638 kb on + strand, within ABIE40_RS03445at 684.639 kb on - strand, within ABIE40_RS03445at 684.639 kb on - strand, within ABIE40_RS03445at 684.639 kb on - strand, within ABIE40_RS03445at 684.830 kb on + strand, within ABIE40_RS03445at 684.830 kb on + strand, within ABIE40_RS03445at 684.830 kb on + strand, within ABIE40_RS03445at 684.830 kb on + strand, within ABIE40_RS03445at 684.831 kb on - strand, within ABIE40_RS03445at 684.831 kb on - strand, within ABIE40_RS03445at 684.831 kb on - strand, within ABIE40_RS03445at 684.831 kb on - strand, within ABIE40_RS03445at 684.831 kb on - strand, within ABIE40_RS03445at 684.831 kb on - strand, within ABIE40_RS03445at 684.911 kb on + strand, within ABIE40_RS03445at 684.911 kb on + strand, within ABIE40_RS03445at 684.912 kb on - strand, within ABIE40_RS03445at 684.912 kb on - strand, within ABIE40_RS03445at 684.912 kb on - strand, within ABIE40_RS03445at 684.970 kb on + strandat 684.971 kb on - strandat 684.971 kb on - strandat 684.971 kb on - strandat 685.108 kb on + strandat 685.108 kb on + strandat 685.108 kb on + strandat 685.108 kb on + strandat 685.108 kb on + strandat 685.109 kb on - strandat 685.109 kb on - strandat 685.118 kb on + strand, within ABIE40_RS03450at 685.119 kb on - strand, within ABIE40_RS03450at 685.156 kb on + strand, within ABIE40_RS03450at 685.156 kb on + strand, within ABIE40_RS03450at 685.157 kb on - strand, within ABIE40_RS03450at 685.157 kb on - strand, within ABIE40_RS03450at 685.157 kb on - strand, within ABIE40_RS03450at 685.157 kb on - strand, within ABIE40_RS03450at 685.157 kb on - strand, within ABIE40_RS03450at 685.379 kb on + strand, within ABIE40_RS03450at 685.687 kb on + strand, within ABIE40_RS03450at 685.687 kb on + strand, within ABIE40_RS03450at 685.727 kb on + strand, within ABIE40_RS03450at 685.815 kb on + strand, within ABIE40_RS03450at 685.816 kb on - strand, within ABIE40_RS03450at 685.816 kb on - strand, within ABIE40_RS03450at 685.904 kb on + strand, within ABIE40_RS03450at 685.905 kb on - strand, within ABIE40_RS03450at 685.933 kb on + strand, within ABIE40_RS03450at 685.933 kb on + strand, within ABIE40_RS03450at 685.933 kb on + strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450at 685.934 kb on - strand, within ABIE40_RS03450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM
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683,797 + +0.3
684,551 - +0.6
684,551 - +0.1
684,583 + +1.9
684,583 + +1.2
684,583 + -3.3
684,583 + +0.8
684,583 + -0.9
684,583 + -3.4
684,583 + +2.0
684,583 + +1.9
684,583 + +0.6
684,583 + -0.3
684,583 + +1.3
684,583 + +0.1
684,584 - +0.1
684,584 - -3.0
684,584 - -1.3
684,584 - -0.4
684,584 - +2.6
684,584 - -3.1
684,584 - +1.1
684,584 - +0.4
684,584 - -0.6
684,593 + -0.3
684,593 + +1.3
684,593 + +0.5
684,593 + +0.4
684,593 + +1.2
684,594 - -0.4
684,594 - +0.8
684,594 - +0.4
684,594 - +0.3
684,594 - +0.8
684,594 - +1.2
684,594 - -0.5
684,594 - +0.9
684,594 - +0.2
684,594 - -0.1
684,638 + ABIE40_RS03445 0.14 +1.1
684,638 + ABIE40_RS03445 0.14 +1.2
684,639 - ABIE40_RS03445 0.14 -1.3
684,639 - ABIE40_RS03445 0.14 +1.4
684,639 - ABIE40_RS03445 0.14 -2.9
684,830 + ABIE40_RS03445 0.64 -0.3
684,830 + ABIE40_RS03445 0.64 +1.0
684,830 + ABIE40_RS03445 0.64 -0.0
684,830 + ABIE40_RS03445 0.64 -0.6
684,831 - ABIE40_RS03445 0.64 +1.0
684,831 - ABIE40_RS03445 0.64 +0.2
684,831 - ABIE40_RS03445 0.64 -4.4
684,831 - ABIE40_RS03445 0.64 -1.9
684,831 - ABIE40_RS03445 0.64 +0.9
684,831 - ABIE40_RS03445 0.64 -2.9
684,911 + ABIE40_RS03445 0.85 +0.8
684,911 + ABIE40_RS03445 0.85 -1.6
684,912 - ABIE40_RS03445 0.85 -1.4
684,912 - ABIE40_RS03445 0.85 -0.7
684,912 - ABIE40_RS03445 0.85 -0.3
684,970 + +0.9
684,971 - -3.3
684,971 - -0.1
684,971 - +0.7
685,108 + -1.7
685,108 + +1.1
685,108 + -0.6
685,108 + +0.4
685,108 + +0.9
685,109 - -2.9
685,109 - -0.7
685,118 + ABIE40_RS03450 0.10 +0.3
685,119 - ABIE40_RS03450 0.11 -1.3
685,156 + ABIE40_RS03450 0.13 +1.0
685,156 + ABIE40_RS03450 0.13 +0.4
685,157 - ABIE40_RS03450 0.13 -2.3
685,157 - ABIE40_RS03450 0.13 -0.1
685,157 - ABIE40_RS03450 0.13 -0.6
685,157 - ABIE40_RS03450 0.13 -1.8
685,157 - ABIE40_RS03450 0.13 +2.3
685,379 + ABIE40_RS03450 0.29 +1.1
685,687 + ABIE40_RS03450 0.50 -3.3
685,687 + ABIE40_RS03450 0.50 +1.8
685,727 + ABIE40_RS03450 0.53 -1.4
685,815 + ABIE40_RS03450 0.59 -1.3
685,816 - ABIE40_RS03450 0.59 -0.5
685,816 - ABIE40_RS03450 0.59 -0.6
685,904 + ABIE40_RS03450 0.66 -1.7
685,905 - ABIE40_RS03450 0.66 +0.2
685,933 + ABIE40_RS03450 0.68 -1.6
685,933 + ABIE40_RS03450 0.68 -2.4
685,933 + ABIE40_RS03450 0.68 -1.9
685,934 - ABIE40_RS03450 0.68 +0.5
685,934 - ABIE40_RS03450 0.68 -0.3
685,934 - ABIE40_RS03450 0.68 -0.2
685,934 - ABIE40_RS03450 0.68 +3.2
685,934 - ABIE40_RS03450 0.68 +1.8
685,934 - ABIE40_RS03450 0.68 +3.2
685,934 - ABIE40_RS03450 0.68 -1.4

Or see this region's nucleotide sequence