Experiment: R2A with 1-octen-3-ol 1.08545883333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS24175 and ABIE40_RS24180 are separated by 80 nucleotides ABIE40_RS24180 and ABIE40_RS24185 are separated by 173 nucleotides
ABIE40_RS24175: ABIE40_RS24175 - ABC transporter permease, at 981,130 to 982,068
_RS24175
ABIE40_RS24180: ABIE40_RS24180 - ABC transporter substrate-binding protein, at 982,149 to 983,726
_RS24180
ABIE40_RS24185: ABIE40_RS24185 - GntR family transcriptional regulator, at 983,900 to 984,910
_RS24185
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 981.248 kb on + strand, within ABIE40_RS24175 at 981.248 kb on + strand, within ABIE40_RS24175 at 981.248 kb on + strand, within ABIE40_RS24175 at 981.248 kb on + strand, within ABIE40_RS24175 at 981.248 kb on + strand, within ABIE40_RS24175 at 981.248 kb on + strand, within ABIE40_RS24175 at 981.249 kb on - strand, within ABIE40_RS24175 at 981.249 kb on - strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.437 kb on + strand, within ABIE40_RS24175 at 981.438 kb on - strand, within ABIE40_RS24175 at 981.438 kb on - strand, within ABIE40_RS24175 at 981.438 kb on - strand, within ABIE40_RS24175 at 981.438 kb on - strand, within ABIE40_RS24175 at 981.458 kb on - strand, within ABIE40_RS24175 at 981.536 kb on + strand, within ABIE40_RS24175 at 981.536 kb on + strand, within ABIE40_RS24175 at 981.536 kb on + strand, within ABIE40_RS24175 at 981.537 kb on - strand, within ABIE40_RS24175 at 981.537 kb on - strand, within ABIE40_RS24175 at 981.538 kb on + strand, within ABIE40_RS24175 at 981.539 kb on - strand, within ABIE40_RS24175 at 981.539 kb on - strand, within ABIE40_RS24175 at 981.627 kb on - strand, within ABIE40_RS24175 at 981.627 kb on - strand, within ABIE40_RS24175 at 981.627 kb on - strand, within ABIE40_RS24175 at 981.822 kb on + strand, within ABIE40_RS24175 at 981.822 kb on + strand, within ABIE40_RS24175 at 981.860 kb on + strand, within ABIE40_RS24175 at 981.861 kb on - strand, within ABIE40_RS24175 at 981.861 kb on - strand, within ABIE40_RS24175 at 981.861 kb on - strand, within ABIE40_RS24175 at 981.861 kb on - strand, within ABIE40_RS24175 at 981.863 kb on + strand, within ABIE40_RS24175 at 981.863 kb on + strand, within ABIE40_RS24175 at 981.863 kb on + strand, within ABIE40_RS24175 at 981.864 kb on - strand, within ABIE40_RS24175 at 982.036 kb on + strand at 982.050 kb on + strand at 982.050 kb on + strand at 982.050 kb on + strand at 982.070 kb on - strand at 982.150 kb on + strand at 982.150 kb on + strand at 982.150 kb on + strand at 982.150 kb on + strand at 982.151 kb on - strand at 982.151 kb on - strand at 982.151 kb on - strand at 982.151 kb on - strand at 982.151 kb on - strand at 982.151 kb on - strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.179 kb on - strand at 982.249 kb on + strand at 982.249 kb on + strand at 982.279 kb on + strand at 982.279 kb on + strand at 982.279 kb on + strand at 982.279 kb on + strand at 982.280 kb on - strand at 982.280 kb on - strand at 982.300 kb on + strand at 982.409 kb on - strand, within ABIE40_RS24180 at 982.417 kb on + strand, within ABIE40_RS24180 at 982.417 kb on + strand, within ABIE40_RS24180 at 982.417 kb on + strand, within ABIE40_RS24180 at 982.418 kb on - strand, within ABIE40_RS24180 at 982.418 kb on - strand, within ABIE40_RS24180 at 982.418 kb on - strand, within ABIE40_RS24180 at 982.418 kb on - strand, within ABIE40_RS24180 at 982.418 kb on - strand, within ABIE40_RS24180 at 982.682 kb on - strand, within ABIE40_RS24180 at 982.682 kb on - strand, within ABIE40_RS24180 at 982.732 kb on + strand, within ABIE40_RS24180 at 982.732 kb on + strand, within ABIE40_RS24180 at 982.733 kb on - strand, within ABIE40_RS24180 at 982.733 kb on - strand, within ABIE40_RS24180 at 982.733 kb on - strand, within ABIE40_RS24180 at 982.733 kb on - strand, within ABIE40_RS24180 at 982.798 kb on + strand, within ABIE40_RS24180 at 982.799 kb on - strand, within ABIE40_RS24180 at 982.875 kb on - strand, within ABIE40_RS24180 at 982.875 kb on - strand, within ABIE40_RS24180 at 982.879 kb on + strand, within ABIE40_RS24180 at 982.879 kb on + strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.880 kb on - strand, within ABIE40_RS24180 at 982.951 kb on + strand, within ABIE40_RS24180 at 982.951 kb on + strand, within ABIE40_RS24180 at 982.952 kb on - strand, within ABIE40_RS24180 at 982.960 kb on - strand, within ABIE40_RS24180 at 983.047 kb on + strand, within ABIE40_RS24180 at 983.048 kb on - strand, within ABIE40_RS24180 at 983.083 kb on + strand, within ABIE40_RS24180 at 983.084 kb on - strand, within ABIE40_RS24180 at 983.084 kb on - strand, within ABIE40_RS24180 at 983.086 kb on + strand, within ABIE40_RS24180 at 983.087 kb on - strand, within ABIE40_RS24180 at 983.087 kb on - strand, within ABIE40_RS24180 at 983.488 kb on + strand, within ABIE40_RS24180 at 983.488 kb on + strand, within ABIE40_RS24180 at 983.489 kb on - strand, within ABIE40_RS24180 at 983.489 kb on - strand, within ABIE40_RS24180 at 983.489 kb on - strand, within ABIE40_RS24180 at 983.489 kb on - strand, within ABIE40_RS24180 at 983.551 kb on + strand, within ABIE40_RS24180 at 983.573 kb on + strand at 983.573 kb on + strand at 983.573 kb on + strand at 983.573 kb on + strand at 983.574 kb on - strand at 983.624 kb on - strand at 983.632 kb on + strand at 983.685 kb on + strand at 983.685 kb on + strand at 983.686 kb on - strand at 983.686 kb on - strand at 983.686 kb on - strand at 983.740 kb on + strand at 983.741 kb on - strand at 983.741 kb on - strand at 983.769 kb on - strand at 983.809 kb on + strand at 983.809 kb on + strand at 983.822 kb on + strand at 983.823 kb on - strand at 983.866 kb on - strand at 983.867 kb on + strand at 983.870 kb on - strand at 983.963 kb on + strand at 983.967 kb on - strand at 983.967 kb on - strand at 984.068 kb on + strand, within ABIE40_RS24185 at 984.068 kb on + strand, within ABIE40_RS24185 at 984.068 kb on + strand, within ABIE40_RS24185 at 984.069 kb on - strand, within ABIE40_RS24185 at 984.100 kb on + strand, within ABIE40_RS24185 at 984.166 kb on + strand, within ABIE40_RS24185 at 984.269 kb on + strand, within ABIE40_RS24185 at 984.502 kb on + strand, within ABIE40_RS24185 at 984.502 kb on + strand, within ABIE40_RS24185 at 984.665 kb on - strand, within ABIE40_RS24185 at 984.725 kb on - strand, within ABIE40_RS24185
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.08545883333333 mM remove 981,248 + ABIE40_RS24175 0.13 -0.3 981,248 + ABIE40_RS24175 0.13 +0.2 981,248 + ABIE40_RS24175 0.13 -0.8 981,248 + ABIE40_RS24175 0.13 -0.1 981,248 + ABIE40_RS24175 0.13 +0.9 981,248 + ABIE40_RS24175 0.13 -1.6 981,249 - ABIE40_RS24175 0.13 +0.4 981,249 - ABIE40_RS24175 0.13 -2.1 981,437 + ABIE40_RS24175 0.33 +0.9 981,437 + ABIE40_RS24175 0.33 -1.1 981,437 + ABIE40_RS24175 0.33 -1.1 981,437 + ABIE40_RS24175 0.33 -1.4 981,437 + ABIE40_RS24175 0.33 -1.1 981,437 + ABIE40_RS24175 0.33 -0.8 981,437 + ABIE40_RS24175 0.33 -1.0 981,438 - ABIE40_RS24175 0.33 +1.8 981,438 - ABIE40_RS24175 0.33 +2.6 981,438 - ABIE40_RS24175 0.33 +4.3 981,438 - ABIE40_RS24175 0.33 +0.4 981,458 - ABIE40_RS24175 0.35 +0.2 981,536 + ABIE40_RS24175 0.43 -1.9 981,536 + ABIE40_RS24175 0.43 -2.9 981,536 + ABIE40_RS24175 0.43 -0.7 981,537 - ABIE40_RS24175 0.43 +4.0 981,537 - ABIE40_RS24175 0.43 +1.0 981,538 + ABIE40_RS24175 0.43 -0.9 981,539 - ABIE40_RS24175 0.44 -3.1 981,539 - ABIE40_RS24175 0.44 -2.4 981,627 - ABIE40_RS24175 0.53 -1.6 981,627 - ABIE40_RS24175 0.53 +0.1 981,627 - ABIE40_RS24175 0.53 -1.0 981,822 + ABIE40_RS24175 0.74 +0.1 981,822 + ABIE40_RS24175 0.74 +0.8 981,860 + ABIE40_RS24175 0.78 +1.4 981,861 - ABIE40_RS24175 0.78 -2.5 981,861 - ABIE40_RS24175 0.78 -0.1 981,861 - ABIE40_RS24175 0.78 -3.2 981,861 - ABIE40_RS24175 0.78 +1.0 981,863 + ABIE40_RS24175 0.78 +0.9 981,863 + ABIE40_RS24175 0.78 -1.9 981,863 + ABIE40_RS24175 0.78 +0.6 981,864 - ABIE40_RS24175 0.78 -0.8 982,036 + +0.9 982,050 + +0.9 982,050 + +0.3 982,050 + +1.6 982,070 - -2.0 982,150 + -2.4 982,150 + +0.2 982,150 + -1.8 982,150 + -0.6 982,151 - -1.3 982,151 - +1.8 982,151 - +0.1 982,151 - -0.2 982,151 - +0.3 982,151 - -0.5 982,178 + -3.4 982,178 + +1.0 982,179 - +1.1 982,249 + -0.3 982,249 + -0.4 982,279 + +0.0 982,279 + +2.6 982,279 + +2.2 982,279 + +1.4 982,280 - +0.2 982,280 - +1.2 982,300 + -0.9 982,409 - ABIE40_RS24180 0.16 +0.2 982,417 + ABIE40_RS24180 0.17 +0.4 982,417 + ABIE40_RS24180 0.17 -0.1 982,417 + ABIE40_RS24180 0.17 -0.8 982,418 - ABIE40_RS24180 0.17 +0.9 982,418 - ABIE40_RS24180 0.17 +0.9 982,418 - ABIE40_RS24180 0.17 +0.4 982,418 - ABIE40_RS24180 0.17 +0.3 982,418 - ABIE40_RS24180 0.17 -0.0 982,682 - ABIE40_RS24180 0.34 +2.0 982,682 - ABIE40_RS24180 0.34 -2.1 982,732 + ABIE40_RS24180 0.37 -1.0 982,732 + ABIE40_RS24180 0.37 -2.0 982,733 - ABIE40_RS24180 0.37 +0.7 982,733 - ABIE40_RS24180 0.37 +1.0 982,733 - ABIE40_RS24180 0.37 -2.1 982,733 - ABIE40_RS24180 0.37 -0.8 982,798 + ABIE40_RS24180 0.41 +1.7 982,799 - ABIE40_RS24180 0.41 +1.0 982,875 - ABIE40_RS24180 0.46 +0.4 982,875 - ABIE40_RS24180 0.46 -1.2 982,879 + ABIE40_RS24180 0.46 -0.3 982,879 + ABIE40_RS24180 0.46 -3.1 982,880 - ABIE40_RS24180 0.46 -0.3 982,880 - ABIE40_RS24180 0.46 -0.7 982,880 - ABIE40_RS24180 0.46 -0.3 982,880 - ABIE40_RS24180 0.46 -0.3 982,880 - ABIE40_RS24180 0.46 +0.9 982,880 - ABIE40_RS24180 0.46 -2.3 982,880 - ABIE40_RS24180 0.46 -1.3 982,951 + ABIE40_RS24180 0.51 -0.7 982,951 + ABIE40_RS24180 0.51 +0.4 982,952 - ABIE40_RS24180 0.51 -1.4 982,960 - ABIE40_RS24180 0.51 -0.5 983,047 + ABIE40_RS24180 0.57 +1.6 983,048 - ABIE40_RS24180 0.57 -0.7 983,083 + ABIE40_RS24180 0.59 -0.5 983,084 - ABIE40_RS24180 0.59 -2.4 983,084 - ABIE40_RS24180 0.59 +0.9 983,086 + ABIE40_RS24180 0.59 -0.7 983,087 - ABIE40_RS24180 0.59 +0.1 983,087 - ABIE40_RS24180 0.59 +1.0 983,488 + ABIE40_RS24180 0.85 -2.1 983,488 + ABIE40_RS24180 0.85 +0.8 983,489 - ABIE40_RS24180 0.85 -2.1 983,489 - ABIE40_RS24180 0.85 +0.1 983,489 - ABIE40_RS24180 0.85 +1.0 983,489 - ABIE40_RS24180 0.85 +0.3 983,551 + ABIE40_RS24180 0.89 -0.3 983,573 + +0.0 983,573 + +0.0 983,573 + +1.0 983,573 + +0.4 983,574 - +0.4 983,624 - +2.4 983,632 + +1.0 983,685 + +2.0 983,685 + -0.1 983,686 - -0.2 983,686 - -0.6 983,686 - -1.1 983,740 + -0.3 983,741 - +0.4 983,741 - +0.4 983,769 - -0.8 983,809 + -0.3 983,809 + +0.7 983,822 + +2.0 983,823 - -0.2 983,866 - +0.3 983,867 + +0.4 983,870 - +1.4 983,963 + +1.6 983,967 - -1.6 983,967 - +0.3 984,068 + ABIE40_RS24185 0.17 -0.6 984,068 + ABIE40_RS24185 0.17 +1.0 984,068 + ABIE40_RS24185 0.17 +1.0 984,069 - ABIE40_RS24185 0.17 -2.1 984,100 + ABIE40_RS24185 0.20 -2.1 984,166 + ABIE40_RS24185 0.26 -0.1 984,269 + ABIE40_RS24185 0.36 -2.8 984,502 + ABIE40_RS24185 0.60 -0.1 984,502 + ABIE40_RS24185 0.60 +0.5 984,665 - ABIE40_RS24185 0.76 -2.0 984,725 - ABIE40_RS24185 0.82 +0.4
Or see this region's nucleotide sequence