Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25355

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25345 and ABIE40_RS25350 are separated by 31 nucleotidesABIE40_RS25350 and ABIE40_RS25355 are separated by 139 nucleotidesABIE40_RS25355 and ABIE40_RS25360 are separated by 69 nucleotides ABIE40_RS25345: ABIE40_RS25345 - LysR family transcriptional regulator, at 1,243,802 to 1,244,689 _RS25345 ABIE40_RS25350: ABIE40_RS25350 - hypothetical protein, at 1,244,721 to 1,245,026 _RS25350 ABIE40_RS25355: ABIE40_RS25355 - PLP-dependent aminotransferase family protein, at 1,245,166 to 1,246,614 _RS25355 ABIE40_RS25360: ABIE40_RS25360 - hydroxyectoine utilization dehydratase EutB, at 1,246,684 to 1,247,697 _RS25360 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1244.195 kb on - strand, within ABIE40_RS25345at 1244.312 kb on + strand, within ABIE40_RS25345at 1244.312 kb on + strand, within ABIE40_RS25345at 1244.312 kb on + strand, within ABIE40_RS25345at 1244.390 kb on + strand, within ABIE40_RS25345at 1244.390 kb on + strand, within ABIE40_RS25345at 1244.391 kb on - strand, within ABIE40_RS25345at 1244.516 kb on + strand, within ABIE40_RS25345at 1244.516 kb on + strand, within ABIE40_RS25345at 1244.516 kb on + strand, within ABIE40_RS25345at 1244.516 kb on + strand, within ABIE40_RS25345at 1244.517 kb on - strand, within ABIE40_RS25345at 1244.832 kb on + strand, within ABIE40_RS25350at 1244.833 kb on - strand, within ABIE40_RS25350at 1244.907 kb on + strand, within ABIE40_RS25350at 1244.908 kb on - strand, within ABIE40_RS25350at 1245.142 kb on - strandat 1245.394 kb on + strand, within ABIE40_RS25355at 1245.394 kb on + strand, within ABIE40_RS25355at 1245.395 kb on - strand, within ABIE40_RS25355at 1245.395 kb on - strand, within ABIE40_RS25355at 1245.418 kb on + strand, within ABIE40_RS25355at 1245.541 kb on + strand, within ABIE40_RS25355at 1245.542 kb on - strand, within ABIE40_RS25355at 1245.600 kb on + strand, within ABIE40_RS25355at 1245.601 kb on - strand, within ABIE40_RS25355at 1245.718 kb on - strand, within ABIE40_RS25355at 1245.829 kb on - strand, within ABIE40_RS25355at 1245.873 kb on + strand, within ABIE40_RS25355at 1245.873 kb on + strand, within ABIE40_RS25355at 1245.874 kb on - strand, within ABIE40_RS25355at 1245.874 kb on - strand, within ABIE40_RS25355at 1245.874 kb on - strand, within ABIE40_RS25355at 1245.874 kb on - strand, within ABIE40_RS25355at 1246.012 kb on + strand, within ABIE40_RS25355at 1246.013 kb on - strand, within ABIE40_RS25355at 1246.042 kb on + strand, within ABIE40_RS25355at 1246.042 kb on + strand, within ABIE40_RS25355at 1246.042 kb on + strand, within ABIE40_RS25355at 1246.042 kb on + strand, within ABIE40_RS25355at 1246.043 kb on - strand, within ABIE40_RS25355at 1246.043 kb on - strand, within ABIE40_RS25355at 1246.043 kb on - strand, within ABIE40_RS25355at 1246.085 kb on + strand, within ABIE40_RS25355at 1246.085 kb on + strand, within ABIE40_RS25355at 1246.086 kb on - strand, within ABIE40_RS25355at 1246.086 kb on - strand, within ABIE40_RS25355at 1246.086 kb on - strand, within ABIE40_RS25355at 1246.153 kb on + strand, within ABIE40_RS25355at 1246.154 kb on - strand, within ABIE40_RS25355at 1246.195 kb on - strand, within ABIE40_RS25355at 1246.225 kb on + strand, within ABIE40_RS25355at 1246.225 kb on + strand, within ABIE40_RS25355at 1246.225 kb on + strand, within ABIE40_RS25355at 1246.226 kb on - strand, within ABIE40_RS25355at 1246.226 kb on - strand, within ABIE40_RS25355at 1246.226 kb on - strand, within ABIE40_RS25355at 1246.717 kb on + strandat 1246.804 kb on + strand, within ABIE40_RS25360at 1246.804 kb on + strand, within ABIE40_RS25360at 1246.805 kb on - strand, within ABIE40_RS25360

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,244,195 - ABIE40_RS25345 0.44 +0.8
1,244,312 + ABIE40_RS25345 0.57 +1.2
1,244,312 + ABIE40_RS25345 0.57 -0.8
1,244,312 + ABIE40_RS25345 0.57 -0.5
1,244,390 + ABIE40_RS25345 0.66 -1.0
1,244,390 + ABIE40_RS25345 0.66 +3.4
1,244,391 - ABIE40_RS25345 0.66 -0.0
1,244,516 + ABIE40_RS25345 0.80 +3.0
1,244,516 + ABIE40_RS25345 0.80 +0.3
1,244,516 + ABIE40_RS25345 0.80 +0.2
1,244,516 + ABIE40_RS25345 0.80 -0.7
1,244,517 - ABIE40_RS25345 0.81 -1.0
1,244,832 + ABIE40_RS25350 0.36 +2.0
1,244,833 - ABIE40_RS25350 0.37 -1.2
1,244,907 + ABIE40_RS25350 0.61 -2.2
1,244,908 - ABIE40_RS25350 0.61 -0.3
1,245,142 - +0.0
1,245,394 + ABIE40_RS25355 0.16 +1.0
1,245,394 + ABIE40_RS25355 0.16 -0.8
1,245,395 - ABIE40_RS25355 0.16 -1.2
1,245,395 - ABIE40_RS25355 0.16 -2.3
1,245,418 + ABIE40_RS25355 0.17 -1.2
1,245,541 + ABIE40_RS25355 0.26 -0.6
1,245,542 - ABIE40_RS25355 0.26 +1.0
1,245,600 + ABIE40_RS25355 0.30 +0.9
1,245,601 - ABIE40_RS25355 0.30 +0.5
1,245,718 - ABIE40_RS25355 0.38 -2.8
1,245,829 - ABIE40_RS25355 0.46 -1.2
1,245,873 + ABIE40_RS25355 0.49 +2.3
1,245,873 + ABIE40_RS25355 0.49 -0.1
1,245,874 - ABIE40_RS25355 0.49 -0.4
1,245,874 - ABIE40_RS25355 0.49 +2.6
1,245,874 - ABIE40_RS25355 0.49 -0.5
1,245,874 - ABIE40_RS25355 0.49 +0.4
1,246,012 + ABIE40_RS25355 0.58 -1.0
1,246,013 - ABIE40_RS25355 0.58 +1.2
1,246,042 + ABIE40_RS25355 0.60 +0.7
1,246,042 + ABIE40_RS25355 0.60 +0.6
1,246,042 + ABIE40_RS25355 0.60 -1.2
1,246,042 + ABIE40_RS25355 0.60 +0.8
1,246,043 - ABIE40_RS25355 0.61 +0.8
1,246,043 - ABIE40_RS25355 0.61 -1.3
1,246,043 - ABIE40_RS25355 0.61 +1.0
1,246,085 + ABIE40_RS25355 0.63 -1.0
1,246,085 + ABIE40_RS25355 0.63 -2.6
1,246,086 - ABIE40_RS25355 0.63 +2.0
1,246,086 - ABIE40_RS25355 0.63 +2.0
1,246,086 - ABIE40_RS25355 0.63 +1.4
1,246,153 + ABIE40_RS25355 0.68 -1.8
1,246,154 - ABIE40_RS25355 0.68 -0.0
1,246,195 - ABIE40_RS25355 0.71 -1.6
1,246,225 + ABIE40_RS25355 0.73 -1.7
1,246,225 + ABIE40_RS25355 0.73 -0.3
1,246,225 + ABIE40_RS25355 0.73 -1.6
1,246,226 - ABIE40_RS25355 0.73 -0.2
1,246,226 - ABIE40_RS25355 0.73 -1.2
1,246,226 - ABIE40_RS25355 0.73 -0.2
1,246,717 + -2.2
1,246,804 + ABIE40_RS25360 0.12 +0.4
1,246,804 + ABIE40_RS25360 0.12 +0.8
1,246,805 - ABIE40_RS25360 0.12 +0.2

Or see this region's nucleotide sequence