Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19945

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19940 and ABIE40_RS19945 are separated by 297 nucleotidesABIE40_RS19945 and ABIE40_RS19950 are separated by 66 nucleotidesABIE40_RS19950 and ABIE40_RS19955 are separated by 29 nucleotides ABIE40_RS19940: ABIE40_RS19940 - HWE histidine kinase domain-containing protein, at 87,310 to 88,449 _RS19940 ABIE40_RS19945: ABIE40_RS19945 - potassium transporter Kup, at 88,747 to 90,648 _RS19945 ABIE40_RS19950: ABIE40_RS19950 - fumarylacetoacetate hydrolase family protein, at 90,715 to 91,560 _RS19950 ABIE40_RS19955: ABIE40_RS19955 - SDR family oxidoreductase, at 91,590 to 92,324 _RS19955 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.873 kb on + strand, within ABIE40_RS19940at 87.873 kb on + strand, within ABIE40_RS19940at 87.874 kb on - strand, within ABIE40_RS19940at 87.874 kb on - strand, within ABIE40_RS19940at 87.874 kb on - strand, within ABIE40_RS19940at 87.874 kb on - strand, within ABIE40_RS19940at 87.875 kb on + strand, within ABIE40_RS19940at 87.875 kb on + strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 87.876 kb on - strand, within ABIE40_RS19940at 88.031 kb on + strand, within ABIE40_RS19940at 88.031 kb on + strand, within ABIE40_RS19940at 88.031 kb on + strand, within ABIE40_RS19940at 88.031 kb on + strand, within ABIE40_RS19940at 88.032 kb on - strand, within ABIE40_RS19940at 88.032 kb on - strand, within ABIE40_RS19940at 88.047 kb on - strand, within ABIE40_RS19940at 88.047 kb on - strand, within ABIE40_RS19940at 88.121 kb on + strand, within ABIE40_RS19940at 88.121 kb on + strand, within ABIE40_RS19940at 88.121 kb on + strand, within ABIE40_RS19940at 88.121 kb on + strand, within ABIE40_RS19940at 88.121 kb on + strand, within ABIE40_RS19940at 88.121 kb on + strand, within ABIE40_RS19940at 88.122 kb on - strand, within ABIE40_RS19940at 88.265 kb on + strand, within ABIE40_RS19940at 88.265 kb on + strand, within ABIE40_RS19940at 88.265 kb on + strand, within ABIE40_RS19940at 88.266 kb on - strand, within ABIE40_RS19940at 88.266 kb on - strand, within ABIE40_RS19940at 88.266 kb on - strand, within ABIE40_RS19940at 88.266 kb on - strand, within ABIE40_RS19940at 88.266 kb on - strand, within ABIE40_RS19940at 88.434 kb on - strandat 88.504 kb on + strandat 88.504 kb on + strandat 88.504 kb on + strandat 88.505 kb on - strandat 88.505 kb on - strandat 88.527 kb on + strandat 88.527 kb on + strandat 88.527 kb on + strandat 88.527 kb on + strandat 88.544 kb on + strandat 88.558 kb on + strandat 88.636 kb on + strandat 88.636 kb on + strandat 88.637 kb on - strandat 88.662 kb on + strandat 88.662 kb on + strandat 88.663 kb on - strandat 88.663 kb on - strandat 88.663 kb on - strandat 88.687 kb on - strandat 88.687 kb on - strandat 88.687 kb on - strandat 88.844 kb on - strandat 88.870 kb on + strandat 88.871 kb on - strandat 88.871 kb on - strandat 88.871 kb on - strandat 88.923 kb on + strandat 89.340 kb on + strand, within ABIE40_RS19945at 89.340 kb on + strand, within ABIE40_RS19945at 89.341 kb on - strand, within ABIE40_RS19945at 89.341 kb on - strand, within ABIE40_RS19945at 89.341 kb on - strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.395 kb on + strand, within ABIE40_RS19945at 89.396 kb on - strand, within ABIE40_RS19945at 89.396 kb on - strand, within ABIE40_RS19945at 89.396 kb on - strand, within ABIE40_RS19945at 89.396 kb on - strand, within ABIE40_RS19945at 89.424 kb on + strand, within ABIE40_RS19945at 89.473 kb on + strand, within ABIE40_RS19945at 89.473 kb on + strand, within ABIE40_RS19945at 89.473 kb on + strand, within ABIE40_RS19945at 89.473 kb on + strand, within ABIE40_RS19945at 89.473 kb on + strand, within ABIE40_RS19945at 89.474 kb on - strand, within ABIE40_RS19945at 89.474 kb on - strand, within ABIE40_RS19945at 89.554 kb on + strand, within ABIE40_RS19945at 89.554 kb on + strand, within ABIE40_RS19945at 89.555 kb on - strand, within ABIE40_RS19945at 89.555 kb on - strand, within ABIE40_RS19945at 89.704 kb on + strand, within ABIE40_RS19945at 89.705 kb on - strand, within ABIE40_RS19945at 89.825 kb on - strand, within ABIE40_RS19945at 89.831 kb on + strand, within ABIE40_RS19945at 89.845 kb on + strand, within ABIE40_RS19945at 89.845 kb on + strand, within ABIE40_RS19945at 89.846 kb on - strand, within ABIE40_RS19945at 89.878 kb on + strand, within ABIE40_RS19945at 89.878 kb on + strand, within ABIE40_RS19945at 89.878 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.091 kb on + strand, within ABIE40_RS19945at 90.092 kb on - strand, within ABIE40_RS19945at 90.092 kb on - strand, within ABIE40_RS19945at 90.092 kb on - strand, within ABIE40_RS19945at 90.092 kb on - strand, within ABIE40_RS19945at 90.271 kb on + strand, within ABIE40_RS19945at 90.271 kb on + strand, within ABIE40_RS19945at 90.271 kb on + strand, within ABIE40_RS19945at 90.272 kb on - strand, within ABIE40_RS19945at 90.272 kb on - strand, within ABIE40_RS19945at 90.405 kb on + strand, within ABIE40_RS19945at 90.405 kb on + strand, within ABIE40_RS19945at 90.405 kb on + strand, within ABIE40_RS19945at 90.405 kb on + strand, within ABIE40_RS19945at 90.406 kb on - strand, within ABIE40_RS19945at 90.592 kb on + strandat 90.593 kb on - strandat 90.593 kb on - strandat 90.593 kb on - strandat 90.593 kb on - strandat 90.593 kb on - strandat 90.657 kb on + strandat 90.657 kb on + strandat 90.657 kb on + strandat 90.657 kb on + strandat 90.795 kb on - strandat 90.884 kb on + strand, within ABIE40_RS19950at 90.884 kb on + strand, within ABIE40_RS19950at 90.896 kb on + strand, within ABIE40_RS19950at 90.896 kb on + strand, within ABIE40_RS19950at 90.908 kb on + strand, within ABIE40_RS19950at 90.909 kb on - strand, within ABIE40_RS19950at 91.112 kb on + strand, within ABIE40_RS19950at 91.113 kb on - strand, within ABIE40_RS19950at 91.124 kb on + strand, within ABIE40_RS19950at 91.124 kb on + strand, within ABIE40_RS19950at 91.124 kb on + strand, within ABIE40_RS19950at 91.124 kb on + strand, within ABIE40_RS19950at 91.124 kb on + strand, within ABIE40_RS19950at 91.125 kb on - strand, within ABIE40_RS19950at 91.125 kb on - strand, within ABIE40_RS19950at 91.125 kb on - strand, within ABIE40_RS19950at 91.125 kb on - strand, within ABIE40_RS19950at 91.152 kb on - strand, within ABIE40_RS19950at 91.322 kb on + strand, within ABIE40_RS19950at 91.322 kb on + strand, within ABIE40_RS19950at 91.323 kb on - strand, within ABIE40_RS19950at 91.323 kb on - strand, within ABIE40_RS19950at 91.323 kb on - strand, within ABIE40_RS19950at 91.384 kb on - strand, within ABIE40_RS19950at 91.384 kb on - strand, within ABIE40_RS19950at 91.544 kb on + strandat 91.544 kb on + strandat 91.619 kb on - strandat 91.636 kb on + strandat 91.636 kb on + strandat 91.636 kb on + strandat 91.636 kb on + strandat 91.636 kb on + strandat 91.636 kb on + strandat 91.637 kb on - strandat 91.637 kb on - strandat 91.637 kb on - strandat 91.637 kb on - strandat 91.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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87,873 + ABIE40_RS19940 0.49 +2.3
87,873 + ABIE40_RS19940 0.49 -2.3
87,874 - ABIE40_RS19940 0.49 -2.0
87,874 - ABIE40_RS19940 0.49 +0.5
87,874 - ABIE40_RS19940 0.49 +1.0
87,874 - ABIE40_RS19940 0.49 -0.3
87,875 + ABIE40_RS19940 0.50 -1.4
87,875 + ABIE40_RS19940 0.50 -0.6
87,876 - ABIE40_RS19940 0.50 -0.2
87,876 - ABIE40_RS19940 0.50 +1.3
87,876 - ABIE40_RS19940 0.50 +0.2
87,876 - ABIE40_RS19940 0.50 -0.6
87,876 - ABIE40_RS19940 0.50 -0.3
87,876 - ABIE40_RS19940 0.50 -0.8
87,876 - ABIE40_RS19940 0.50 +1.0
87,876 - ABIE40_RS19940 0.50 -1.6
87,876 - ABIE40_RS19940 0.50 +2.4
87,876 - ABIE40_RS19940 0.50 +0.2
88,031 + ABIE40_RS19940 0.63 -0.8
88,031 + ABIE40_RS19940 0.63 +0.0
88,031 + ABIE40_RS19940 0.63 -0.3
88,031 + ABIE40_RS19940 0.63 -1.0
88,032 - ABIE40_RS19940 0.63 +0.4
88,032 - ABIE40_RS19940 0.63 -0.9
88,047 - ABIE40_RS19940 0.65 +1.0
88,047 - ABIE40_RS19940 0.65 -0.0
88,121 + ABIE40_RS19940 0.71 -1.0
88,121 + ABIE40_RS19940 0.71 +0.2
88,121 + ABIE40_RS19940 0.71 -0.1
88,121 + ABIE40_RS19940 0.71 +0.1
88,121 + ABIE40_RS19940 0.71 -0.1
88,121 + ABIE40_RS19940 0.71 -1.8
88,122 - ABIE40_RS19940 0.71 -0.0
88,265 + ABIE40_RS19940 0.84 +0.1
88,265 + ABIE40_RS19940 0.84 +0.9
88,265 + ABIE40_RS19940 0.84 +0.3
88,266 - ABIE40_RS19940 0.84 +2.0
88,266 - ABIE40_RS19940 0.84 -1.9
88,266 - ABIE40_RS19940 0.84 +0.8
88,266 - ABIE40_RS19940 0.84 -0.5
88,266 - ABIE40_RS19940 0.84 -0.3
88,434 - +0.2
88,504 + -1.3
88,504 + -0.0
88,504 + +1.0
88,505 - -1.7
88,505 - +1.4
88,527 + +0.8
88,527 + +0.4
88,527 + -1.3
88,527 + -1.3
88,544 + +0.5
88,558 + -3.7
88,636 + -0.0
88,636 + +2.0
88,637 - -1.7
88,662 + +2.0
88,662 + +2.0
88,663 - +0.4
88,663 - -1.9
88,663 - -3.1
88,687 - +1.0
88,687 - +0.1
88,687 - -2.6
88,844 - +0.6
88,870 + +0.5
88,871 - -1.6
88,871 - -0.3
88,871 - -0.2
88,923 + +1.0
89,340 + ABIE40_RS19945 0.31 -1.5
89,340 + ABIE40_RS19945 0.31 +1.5
89,341 - ABIE40_RS19945 0.31 +0.4
89,341 - ABIE40_RS19945 0.31 +0.1
89,341 - ABIE40_RS19945 0.31 +0.4
89,395 + ABIE40_RS19945 0.34 +1.5
89,395 + ABIE40_RS19945 0.34 -2.1
89,395 + ABIE40_RS19945 0.34 +0.4
89,395 + ABIE40_RS19945 0.34 +0.3
89,395 + ABIE40_RS19945 0.34 -0.7
89,395 + ABIE40_RS19945 0.34 +0.8
89,395 + ABIE40_RS19945 0.34 +0.8
89,396 - ABIE40_RS19945 0.34 -0.0
89,396 - ABIE40_RS19945 0.34 -1.8
89,396 - ABIE40_RS19945 0.34 -0.1
89,396 - ABIE40_RS19945 0.34 +0.2
89,424 + ABIE40_RS19945 0.36 -0.7
89,473 + ABIE40_RS19945 0.38 +0.5
89,473 + ABIE40_RS19945 0.38 +0.2
89,473 + ABIE40_RS19945 0.38 +0.4
89,473 + ABIE40_RS19945 0.38 +0.7
89,473 + ABIE40_RS19945 0.38 +0.1
89,474 - ABIE40_RS19945 0.38 -0.4
89,474 - ABIE40_RS19945 0.38 -0.2
89,554 + ABIE40_RS19945 0.42 -1.3
89,554 + ABIE40_RS19945 0.42 -1.3
89,555 - ABIE40_RS19945 0.42 +1.0
89,555 - ABIE40_RS19945 0.42 +1.5
89,704 + ABIE40_RS19945 0.50 -1.0
89,705 - ABIE40_RS19945 0.50 +1.0
89,825 - ABIE40_RS19945 0.57 +0.5
89,831 + ABIE40_RS19945 0.57 +1.3
89,845 + ABIE40_RS19945 0.58 +3.6
89,845 + ABIE40_RS19945 0.58 +0.2
89,846 - ABIE40_RS19945 0.58 -0.5
89,878 + ABIE40_RS19945 0.59 +0.4
89,878 + ABIE40_RS19945 0.59 +0.0
89,878 + ABIE40_RS19945 0.59 +0.0
90,091 + ABIE40_RS19945 0.71 -1.2
90,091 + ABIE40_RS19945 0.71 -2.2
90,091 + ABIE40_RS19945 0.71 +0.6
90,091 + ABIE40_RS19945 0.71 -0.0
90,091 + ABIE40_RS19945 0.71 +0.8
90,091 + ABIE40_RS19945 0.71 -1.3
90,091 + ABIE40_RS19945 0.71 -0.3
90,091 + ABIE40_RS19945 0.71 -0.9
90,092 - ABIE40_RS19945 0.71 +2.3
90,092 - ABIE40_RS19945 0.71 -1.8
90,092 - ABIE40_RS19945 0.71 +0.4
90,092 - ABIE40_RS19945 0.71 -1.8
90,271 + ABIE40_RS19945 0.80 +0.6
90,271 + ABIE40_RS19945 0.80 -1.1
90,271 + ABIE40_RS19945 0.80 +1.0
90,272 - ABIE40_RS19945 0.80 -0.8
90,272 - ABIE40_RS19945 0.80 -0.1
90,405 + ABIE40_RS19945 0.87 -1.7
90,405 + ABIE40_RS19945 0.87 +0.2
90,405 + ABIE40_RS19945 0.87 +0.1
90,405 + ABIE40_RS19945 0.87 -2.1
90,406 - ABIE40_RS19945 0.87 +0.1
90,592 + +0.6
90,593 - +0.4
90,593 - -1.2
90,593 - +0.5
90,593 - -0.1
90,593 - -0.7
90,657 + -1.3
90,657 + +0.9
90,657 + +0.9
90,657 + +0.1
90,795 - -0.3
90,884 + ABIE40_RS19950 0.20 +0.3
90,884 + ABIE40_RS19950 0.20 +0.0
90,896 + ABIE40_RS19950 0.21 -0.6
90,896 + ABIE40_RS19950 0.21 -1.0
90,908 + ABIE40_RS19950 0.23 -0.5
90,909 - ABIE40_RS19950 0.23 +0.1
91,112 + ABIE40_RS19950 0.47 +0.4
91,113 - ABIE40_RS19950 0.47 +0.0
91,124 + ABIE40_RS19950 0.48 -0.2
91,124 + ABIE40_RS19950 0.48 +0.2
91,124 + ABIE40_RS19950 0.48 -1.4
91,124 + ABIE40_RS19950 0.48 -0.5
91,124 + ABIE40_RS19950 0.48 -0.8
91,125 - ABIE40_RS19950 0.48 -0.2
91,125 - ABIE40_RS19950 0.48 -0.2
91,125 - ABIE40_RS19950 0.48 +0.9
91,125 - ABIE40_RS19950 0.48 +1.1
91,152 - ABIE40_RS19950 0.52 -0.3
91,322 + ABIE40_RS19950 0.72 -1.0
91,322 + ABIE40_RS19950 0.72 -0.8
91,323 - ABIE40_RS19950 0.72 +2.0
91,323 - ABIE40_RS19950 0.72 -1.0
91,323 - ABIE40_RS19950 0.72 -0.3
91,384 - ABIE40_RS19950 0.79 +0.5
91,384 - ABIE40_RS19950 0.79 +3.0
91,544 + +1.2
91,544 + -0.8
91,619 - +1.1
91,636 + +0.4
91,636 + -0.0
91,636 + +0.7
91,636 + +1.2
91,636 + +1.6
91,636 + -0.0
91,637 - -0.0
91,637 - -0.2
91,637 - -0.4
91,637 - -0.5
91,637 - -0.1

Or see this region's nucleotide sequence