Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29715 and ABIE40_RS29720 are separated by 354 nucleotides ABIE40_RS29720 and ABIE40_RS29725 are separated by 207 nucleotides
ABIE40_RS29715: ABIE40_RS29715 - hypothetical protein, at 635,221 to 635,343
_RS29715
ABIE40_RS29720: ABIE40_RS29720 - hypothetical protein, at 635,698 to 638,055
_RS29720
ABIE40_RS29725: ABIE40_RS29725 - Fic family protein, at 638,263 to 639,369
_RS29725
Position (kb) 635
636
637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 634.706 kb on - strand at 634.723 kb on + strand at 634.724 kb on - strand at 634.899 kb on - strand at 635.106 kb on + strand at 635.243 kb on - strand, within ABIE40_RS29715 at 635.243 kb on - strand, within ABIE40_RS29715 at 635.269 kb on + strand, within ABIE40_RS29715 at 635.270 kb on - strand, within ABIE40_RS29715 at 635.343 kb on + strand at 635.344 kb on - strand at 635.344 kb on - strand at 635.379 kb on + strand at 635.432 kb on + strand at 635.465 kb on + strand at 635.480 kb on + strand at 635.481 kb on - strand at 635.517 kb on + strand at 635.532 kb on + strand at 635.532 kb on + strand at 635.533 kb on - strand at 635.609 kb on + strand at 635.699 kb on + strand at 635.700 kb on - strand at 635.700 kb on - strand at 635.700 kb on - strand at 635.796 kb on + strand at 635.811 kb on - strand at 635.825 kb on + strand at 635.921 kb on + strand at 635.929 kb on - strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.931 kb on - strand at 635.931 kb on - strand at 635.931 kb on - strand at 635.969 kb on + strand, within ABIE40_RS29720 at 635.970 kb on - strand, within ABIE40_RS29720 at 635.987 kb on + strand, within ABIE40_RS29720 at 635.988 kb on - strand, within ABIE40_RS29720 at 635.988 kb on - strand, within ABIE40_RS29720 at 635.988 kb on - strand, within ABIE40_RS29720 at 636.000 kb on + strand, within ABIE40_RS29720 at 636.000 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.190 kb on - strand, within ABIE40_RS29720 at 636.273 kb on - strand, within ABIE40_RS29720 at 636.273 kb on - strand, within ABIE40_RS29720 at 636.349 kb on + strand, within ABIE40_RS29720 at 636.349 kb on + strand, within ABIE40_RS29720 at 636.349 kb on + strand, within ABIE40_RS29720 at 636.349 kb on + strand, within ABIE40_RS29720 at 636.350 kb on - strand, within ABIE40_RS29720 at 636.360 kb on + strand, within ABIE40_RS29720 at 636.361 kb on - strand, within ABIE40_RS29720 at 636.386 kb on + strand, within ABIE40_RS29720 at 636.386 kb on + strand, within ABIE40_RS29720 at 636.387 kb on - strand, within ABIE40_RS29720 at 636.387 kb on - strand, within ABIE40_RS29720 at 636.405 kb on + strand, within ABIE40_RS29720 at 636.405 kb on + strand, within ABIE40_RS29720 at 636.406 kb on - strand, within ABIE40_RS29720 at 636.406 kb on - strand, within ABIE40_RS29720 at 636.466 kb on + strand, within ABIE40_RS29720 at 636.682 kb on + strand, within ABIE40_RS29720 at 636.725 kb on + strand, within ABIE40_RS29720 at 636.726 kb on - strand, within ABIE40_RS29720 at 636.758 kb on + strand, within ABIE40_RS29720 at 636.759 kb on - strand, within ABIE40_RS29720 at 636.799 kb on + strand, within ABIE40_RS29720 at 636.800 kb on - strand, within ABIE40_RS29720 at 636.800 kb on - strand, within ABIE40_RS29720 at 637.109 kb on + strand, within ABIE40_RS29720 at 637.110 kb on - strand, within ABIE40_RS29720 at 637.110 kb on - strand, within ABIE40_RS29720 at 637.110 kb on - strand, within ABIE40_RS29720 at 637.110 kb on - strand, within ABIE40_RS29720 at 637.180 kb on - strand, within ABIE40_RS29720 at 637.233 kb on + strand, within ABIE40_RS29720 at 637.234 kb on - strand, within ABIE40_RS29720 at 637.319 kb on + strand, within ABIE40_RS29720 at 637.320 kb on - strand, within ABIE40_RS29720 at 637.359 kb on - strand, within ABIE40_RS29720 at 637.389 kb on + strand, within ABIE40_RS29720 at 637.497 kb on + strand, within ABIE40_RS29720 at 637.511 kb on + strand, within ABIE40_RS29720 at 637.511 kb on + strand, within ABIE40_RS29720 at 637.511 kb on + strand, within ABIE40_RS29720 at 637.512 kb on - strand, within ABIE40_RS29720 at 637.533 kb on + strand, within ABIE40_RS29720 at 637.533 kb on + strand, within ABIE40_RS29720 at 637.533 kb on + strand, within ABIE40_RS29720 at 637.533 kb on + strand, within ABIE40_RS29720 at 637.534 kb on - strand, within ABIE40_RS29720 at 637.539 kb on - strand, within ABIE40_RS29720 at 637.539 kb on - strand, within ABIE40_RS29720 at 637.585 kb on + strand, within ABIE40_RS29720 at 637.585 kb on + strand, within ABIE40_RS29720 at 637.606 kb on + strand, within ABIE40_RS29720 at 637.728 kb on + strand, within ABIE40_RS29720 at 637.729 kb on - strand, within ABIE40_RS29720 at 637.729 kb on - strand, within ABIE40_RS29720 at 637.888 kb on + strand at 637.888 kb on + strand at 637.888 kb on + strand at 637.888 kb on - strand at 637.889 kb on - strand at 637.889 kb on - strand at 637.889 kb on - strand at 637.890 kb on + strand at 637.926 kb on + strand at 637.926 kb on + strand at 637.943 kb on + strand at 637.943 kb on + strand at 637.952 kb on - strand at 637.952 kb on - strand at 637.952 kb on - strand at 637.989 kb on + strand at 637.990 kb on - strand at 638.055 kb on + strand at 638.055 kb on + strand at 638.056 kb on - strand at 638.056 kb on - strand at 638.059 kb on + strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.123 kb on + strand at 638.123 kb on + strand at 638.123 kb on + strand at 638.123 kb on + strand at 638.123 kb on + strand at 638.124 kb on - strand at 638.124 kb on - strand at 638.142 kb on + strand at 638.306 kb on - strand at 638.306 kb on - strand at 638.578 kb on + strand, within ABIE40_RS29725 at 638.578 kb on + strand, within ABIE40_RS29725 at 638.580 kb on + strand, within ABIE40_RS29725 at 638.580 kb on + strand, within ABIE40_RS29725 at 638.580 kb on + strand, within ABIE40_RS29725 at 638.581 kb on - strand, within ABIE40_RS29725 at 638.581 kb on - strand, within ABIE40_RS29725 at 638.593 kb on - strand, within ABIE40_RS29725 at 638.655 kb on + strand, within ABIE40_RS29725 at 638.705 kb on + strand, within ABIE40_RS29725 at 638.706 kb on - strand, within ABIE40_RS29725 at 638.863 kb on + strand, within ABIE40_RS29725 at 638.876 kb on + strand, within ABIE40_RS29725 at 638.876 kb on + strand, within ABIE40_RS29725 at 638.877 kb on - strand, within ABIE40_RS29725 at 639.001 kb on + strand, within ABIE40_RS29725 at 639.002 kb on - strand, within ABIE40_RS29725 at 639.004 kb on + strand, within ABIE40_RS29725 at 639.004 kb on + strand, within ABIE40_RS29725 at 639.039 kb on + strand, within ABIE40_RS29725 at 639.040 kb on - strand, within ABIE40_RS29725
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 634,706 - -0.8 634,723 + +1.2 634,724 - -0.3 634,899 - -2.6 635,106 + +2.2 635,243 - ABIE40_RS29715 0.18 +3.2 635,243 - ABIE40_RS29715 0.18 -1.3 635,269 + ABIE40_RS29715 0.39 -0.7 635,270 - ABIE40_RS29715 0.40 -1.1 635,343 + +2.2 635,344 - +2.2 635,344 - +1.8 635,379 + +0.3 635,432 + -0.9 635,465 + -0.8 635,480 + -1.3 635,481 - -1.5 635,517 + -0.7 635,532 + -0.8 635,532 + +0.2 635,533 - -0.4 635,609 + +0.4 635,699 + -1.3 635,700 - +0.4 635,700 - -1.3 635,700 - +0.4 635,796 + -2.3 635,811 - -0.0 635,825 + -0.8 635,921 + +2.2 635,929 - -2.0 635,930 + +0.2 635,930 + -1.1 635,930 + -1.4 635,930 + -1.3 635,930 + +0.9 635,931 - +0.6 635,931 - +0.7 635,931 - -1.9 635,969 + ABIE40_RS29720 0.11 -1.4 635,970 - ABIE40_RS29720 0.12 +0.3 635,987 + ABIE40_RS29720 0.12 -0.5 635,988 - ABIE40_RS29720 0.12 -1.0 635,988 - ABIE40_RS29720 0.12 +0.6 635,988 - ABIE40_RS29720 0.12 -0.8 636,000 + ABIE40_RS29720 0.13 -1.1 636,000 + ABIE40_RS29720 0.13 +1.5 636,083 + ABIE40_RS29720 0.16 -2.1 636,083 + ABIE40_RS29720 0.16 -2.4 636,083 + ABIE40_RS29720 0.16 -0.5 636,083 + ABIE40_RS29720 0.16 +0.6 636,190 - ABIE40_RS29720 0.21 -1.3 636,273 - ABIE40_RS29720 0.24 +1.6 636,273 - ABIE40_RS29720 0.24 +1.6 636,349 + ABIE40_RS29720 0.28 +2.2 636,349 + ABIE40_RS29720 0.28 +1.2 636,349 + ABIE40_RS29720 0.28 +0.4 636,349 + ABIE40_RS29720 0.28 +0.4 636,350 - ABIE40_RS29720 0.28 +1.2 636,360 + ABIE40_RS29720 0.28 +1.0 636,361 - ABIE40_RS29720 0.28 +0.6 636,386 + ABIE40_RS29720 0.29 -2.0 636,386 + ABIE40_RS29720 0.29 -1.5 636,387 - ABIE40_RS29720 0.29 +0.8 636,387 - ABIE40_RS29720 0.29 +0.3 636,405 + ABIE40_RS29720 0.30 -0.8 636,405 + ABIE40_RS29720 0.30 -1.0 636,406 - ABIE40_RS29720 0.30 -1.4 636,406 - ABIE40_RS29720 0.30 +2.2 636,466 + ABIE40_RS29720 0.33 +0.2 636,682 + ABIE40_RS29720 0.42 +0.4 636,725 + ABIE40_RS29720 0.44 -1.1 636,726 - ABIE40_RS29720 0.44 -0.1 636,758 + ABIE40_RS29720 0.45 -2.0 636,759 - ABIE40_RS29720 0.45 -2.4 636,799 + ABIE40_RS29720 0.47 -0.1 636,800 - ABIE40_RS29720 0.47 +1.2 636,800 - ABIE40_RS29720 0.47 -1.3 637,109 + ABIE40_RS29720 0.60 +0.9 637,110 - ABIE40_RS29720 0.60 -1.0 637,110 - ABIE40_RS29720 0.60 +0.3 637,110 - ABIE40_RS29720 0.60 +1.8 637,110 - ABIE40_RS29720 0.60 -0.1 637,180 - ABIE40_RS29720 0.63 +1.2 637,233 + ABIE40_RS29720 0.65 +1.2 637,234 - ABIE40_RS29720 0.65 -0.0 637,319 + ABIE40_RS29720 0.69 -1.8 637,320 - ABIE40_RS29720 0.69 +0.3 637,359 - ABIE40_RS29720 0.70 -0.1 637,389 + ABIE40_RS29720 0.72 -0.8 637,497 + ABIE40_RS29720 0.76 +0.6 637,511 + ABIE40_RS29720 0.77 -1.8 637,511 + ABIE40_RS29720 0.77 +0.4 637,511 + ABIE40_RS29720 0.77 +0.9 637,512 - ABIE40_RS29720 0.77 -1.7 637,533 + ABIE40_RS29720 0.78 -1.4 637,533 + ABIE40_RS29720 0.78 +0.2 637,533 + ABIE40_RS29720 0.78 +1.0 637,533 + ABIE40_RS29720 0.78 -1.6 637,534 - ABIE40_RS29720 0.78 -0.1 637,539 - ABIE40_RS29720 0.78 +0.2 637,539 - ABIE40_RS29720 0.78 -0.1 637,585 + ABIE40_RS29720 0.80 -3.2 637,585 + ABIE40_RS29720 0.80 +0.3 637,606 + ABIE40_RS29720 0.81 -1.0 637,728 + ABIE40_RS29720 0.86 -0.8 637,729 - ABIE40_RS29720 0.86 -1.1 637,729 - ABIE40_RS29720 0.86 -1.5 637,888 + -2.0 637,888 + +0.6 637,888 + +1.3 637,888 - -0.6 637,889 - +2.0 637,889 - -1.6 637,889 - -0.4 637,890 + -2.6 637,926 + +0.2 637,926 + +0.1 637,943 + -2.2 637,943 + -1.6 637,952 - +0.4 637,952 - +1.2 637,952 - -1.1 637,989 + +0.5 637,990 - +2.2 638,055 + -0.5 638,055 + -0.1 638,056 - -1.7 638,056 - +0.2 638,059 + -0.3 638,060 - -1.6 638,060 - +0.6 638,060 - -2.4 638,123 + +2.0 638,123 + +2.2 638,123 + +1.6 638,123 + -1.2 638,123 + +1.2 638,124 - -0.8 638,124 - +0.1 638,142 + -1.3 638,306 - -0.4 638,306 - +1.2 638,578 + ABIE40_RS29725 0.28 +1.1 638,578 + ABIE40_RS29725 0.28 -0.5 638,580 + ABIE40_RS29725 0.29 -2.4 638,580 + ABIE40_RS29725 0.29 -1.4 638,580 + ABIE40_RS29725 0.29 -0.6 638,581 - ABIE40_RS29725 0.29 -0.7 638,581 - ABIE40_RS29725 0.29 -1.4 638,593 - ABIE40_RS29725 0.30 +2.2 638,655 + ABIE40_RS29725 0.35 -0.4 638,705 + ABIE40_RS29725 0.40 -1.6 638,706 - ABIE40_RS29725 0.40 -0.0 638,863 + ABIE40_RS29725 0.54 +1.7 638,876 + ABIE40_RS29725 0.55 +0.6 638,876 + ABIE40_RS29725 0.55 +1.3 638,877 - ABIE40_RS29725 0.55 +0.3 639,001 + ABIE40_RS29725 0.67 +1.5 639,002 - ABIE40_RS29725 0.67 +0.0 639,004 + ABIE40_RS29725 0.67 +2.2 639,004 + ABIE40_RS29725 0.67 -0.8 639,039 + ABIE40_RS29725 0.70 -0.3 639,040 - ABIE40_RS29725 0.70 -1.1
Or see this region's nucleotide sequence