Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24170

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS24165 and ABIE40_RS24170 overlap by 4 nucleotidesABIE40_RS24170 and ABIE40_RS24175 overlap by 4 nucleotides ABIE40_RS24165: ABIE40_RS24165 - ABC transporter ATP-binding protein, at 979,281 to 980,288 _RS24165 ABIE40_RS24170: ABIE40_RS24170 - ABC transporter permease, at 980,285 to 981,133 _RS24170 ABIE40_RS24175: ABIE40_RS24175 - ABC transporter permease, at 981,130 to 982,068 _RS24175 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1 2at 979.525 kb on + strand, within ABIE40_RS24165at 979.525 kb on + strand, within ABIE40_RS24165at 979.525 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.588 kb on + strand, within ABIE40_RS24165at 979.589 kb on - strand, within ABIE40_RS24165at 979.589 kb on - strand, within ABIE40_RS24165at 979.589 kb on - strand, within ABIE40_RS24165at 979.589 kb on - strand, within ABIE40_RS24165at 979.589 kb on - strand, within ABIE40_RS24165at 979.913 kb on + strand, within ABIE40_RS24165at 979.914 kb on - strand, within ABIE40_RS24165at 980.339 kb on + strandat 980.580 kb on + strand, within ABIE40_RS24170at 980.580 kb on + strand, within ABIE40_RS24170at 980.581 kb on - strand, within ABIE40_RS24170at 980.608 kb on - strand, within ABIE40_RS24170at 980.656 kb on - strand, within ABIE40_RS24170at 980.656 kb on - strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.688 kb on + strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.689 kb on - strand, within ABIE40_RS24170at 980.773 kb on + strand, within ABIE40_RS24170at 980.773 kb on + strand, within ABIE40_RS24170at 980.773 kb on + strand, within ABIE40_RS24170at 980.773 kb on + strand, within ABIE40_RS24170at 980.808 kb on + strand, within ABIE40_RS24170at 980.809 kb on - strand, within ABIE40_RS24170at 980.887 kb on + strand, within ABIE40_RS24170at 980.887 kb on + strand, within ABIE40_RS24170at 980.887 kb on + strand, within ABIE40_RS24170at 980.889 kb on + strand, within ABIE40_RS24170at 980.889 kb on + strand, within ABIE40_RS24170at 980.910 kb on - strand, within ABIE40_RS24170at 980.910 kb on - strand, within ABIE40_RS24170at 980.913 kb on - strand, within ABIE40_RS24170at 980.913 kb on - strand, within ABIE40_RS24170at 980.980 kb on - strand, within ABIE40_RS24170at 980.980 kb on - strand, within ABIE40_RS24170at 981.067 kb on + strandat 981.067 kb on + strandat 981.068 kb on - strandat 981.068 kb on - strandat 981.068 kb on - strandat 981.068 kb on - strandat 981.248 kb on + strand, within ABIE40_RS24175at 981.248 kb on + strand, within ABIE40_RS24175at 981.248 kb on + strand, within ABIE40_RS24175at 981.248 kb on + strand, within ABIE40_RS24175at 981.248 kb on + strand, within ABIE40_RS24175at 981.248 kb on + strand, within ABIE40_RS24175at 981.249 kb on - strand, within ABIE40_RS24175at 981.249 kb on - strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.437 kb on + strand, within ABIE40_RS24175at 981.438 kb on - strand, within ABIE40_RS24175at 981.438 kb on - strand, within ABIE40_RS24175at 981.438 kb on - strand, within ABIE40_RS24175at 981.438 kb on - strand, within ABIE40_RS24175at 981.458 kb on - strand, within ABIE40_RS24175at 981.536 kb on + strand, within ABIE40_RS24175at 981.536 kb on + strand, within ABIE40_RS24175at 981.536 kb on + strand, within ABIE40_RS24175at 981.537 kb on - strand, within ABIE40_RS24175at 981.537 kb on - strand, within ABIE40_RS24175at 981.538 kb on + strand, within ABIE40_RS24175at 981.539 kb on - strand, within ABIE40_RS24175at 981.539 kb on - strand, within ABIE40_RS24175at 981.627 kb on - strand, within ABIE40_RS24175at 981.627 kb on - strand, within ABIE40_RS24175at 981.627 kb on - strand, within ABIE40_RS24175at 981.822 kb on + strand, within ABIE40_RS24175at 981.822 kb on + strand, within ABIE40_RS24175at 981.860 kb on + strand, within ABIE40_RS24175at 981.861 kb on - strand, within ABIE40_RS24175at 981.861 kb on - strand, within ABIE40_RS24175at 981.861 kb on - strand, within ABIE40_RS24175at 981.861 kb on - strand, within ABIE40_RS24175at 981.863 kb on + strand, within ABIE40_RS24175at 981.863 kb on + strand, within ABIE40_RS24175at 981.863 kb on + strand, within ABIE40_RS24175at 981.864 kb on - strand, within ABIE40_RS24175at 982.036 kb on + strandat 982.050 kb on + strandat 982.050 kb on + strandat 982.050 kb on + strandat 982.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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979,525 + ABIE40_RS24165 0.24 -0.0
979,525 + ABIE40_RS24165 0.24 +0.7
979,525 + ABIE40_RS24165 0.24 -1.0
979,588 + ABIE40_RS24165 0.30 +1.2
979,588 + ABIE40_RS24165 0.30 -0.3
979,588 + ABIE40_RS24165 0.30 -0.2
979,588 + ABIE40_RS24165 0.30 +1.3
979,588 + ABIE40_RS24165 0.30 -0.6
979,588 + ABIE40_RS24165 0.30 -0.2
979,588 + ABIE40_RS24165 0.30 -0.3
979,588 + ABIE40_RS24165 0.30 +1.2
979,588 + ABIE40_RS24165 0.30 +0.6
979,588 + ABIE40_RS24165 0.30 -0.6
979,588 + ABIE40_RS24165 0.30 -0.0
979,589 - ABIE40_RS24165 0.31 -1.0
979,589 - ABIE40_RS24165 0.31 +0.3
979,589 - ABIE40_RS24165 0.31 -0.8
979,589 - ABIE40_RS24165 0.31 -1.2
979,589 - ABIE40_RS24165 0.31 +0.4
979,913 + ABIE40_RS24165 0.63 -2.3
979,914 - ABIE40_RS24165 0.63 -0.5
980,339 + +0.0
980,580 + ABIE40_RS24170 0.35 -1.8
980,580 + ABIE40_RS24170 0.35 -0.4
980,581 - ABIE40_RS24170 0.35 -0.9
980,608 - ABIE40_RS24170 0.38 -0.3
980,656 - ABIE40_RS24170 0.44 +0.9
980,656 - ABIE40_RS24170 0.44 +1.5
980,688 + ABIE40_RS24170 0.47 -2.6
980,688 + ABIE40_RS24170 0.47 -0.4
980,688 + ABIE40_RS24170 0.47 -0.7
980,688 + ABIE40_RS24170 0.47 +1.0
980,688 + ABIE40_RS24170 0.47 +0.0
980,688 + ABIE40_RS24170 0.47 -1.1
980,688 + ABIE40_RS24170 0.47 +2.6
980,688 + ABIE40_RS24170 0.47 -0.9
980,689 - ABIE40_RS24170 0.48 +1.0
980,689 - ABIE40_RS24170 0.48 +0.8
980,689 - ABIE40_RS24170 0.48 -0.5
980,689 - ABIE40_RS24170 0.48 -2.2
980,689 - ABIE40_RS24170 0.48 +0.1
980,689 - ABIE40_RS24170 0.48 -1.8
980,689 - ABIE40_RS24170 0.48 +0.1
980,689 - ABIE40_RS24170 0.48 -2.6
980,689 - ABIE40_RS24170 0.48 -0.4
980,689 - ABIE40_RS24170 0.48 +0.5
980,689 - ABIE40_RS24170 0.48 -0.1
980,689 - ABIE40_RS24170 0.48 +2.2
980,689 - ABIE40_RS24170 0.48 -1.8
980,689 - ABIE40_RS24170 0.48 -0.3
980,689 - ABIE40_RS24170 0.48 +0.0
980,689 - ABIE40_RS24170 0.48 -0.3
980,689 - ABIE40_RS24170 0.48 +1.0
980,773 + ABIE40_RS24170 0.57 -0.9
980,773 + ABIE40_RS24170 0.57 -0.6
980,773 + ABIE40_RS24170 0.57 -0.7
980,773 + ABIE40_RS24170 0.57 -0.6
980,808 + ABIE40_RS24170 0.62 +0.0
980,809 - ABIE40_RS24170 0.62 +0.5
980,887 + ABIE40_RS24170 0.71 -0.7
980,887 + ABIE40_RS24170 0.71 +0.0
980,887 + ABIE40_RS24170 0.71 -0.8
980,889 + ABIE40_RS24170 0.71 +0.0
980,889 + ABIE40_RS24170 0.71 -0.6
980,910 - ABIE40_RS24170 0.74 +0.5
980,910 - ABIE40_RS24170 0.74 -1.7
980,913 - ABIE40_RS24170 0.74 -0.6
980,913 - ABIE40_RS24170 0.74 +0.1
980,980 - ABIE40_RS24170 0.82 +0.1
980,980 - ABIE40_RS24170 0.82 -2.7
981,067 + -1.1
981,067 + +0.0
981,068 - -0.4
981,068 - -1.0
981,068 - +1.0
981,068 - +0.4
981,248 + ABIE40_RS24175 0.13 +2.5
981,248 + ABIE40_RS24175 0.13 +0.1
981,248 + ABIE40_RS24175 0.13 -0.8
981,248 + ABIE40_RS24175 0.13 -0.8
981,248 + ABIE40_RS24175 0.13 -0.1
981,248 + ABIE40_RS24175 0.13 -1.6
981,249 - ABIE40_RS24175 0.13 +0.4
981,249 - ABIE40_RS24175 0.13 -0.6
981,437 + ABIE40_RS24175 0.33 -0.2
981,437 + ABIE40_RS24175 0.33 +0.5
981,437 + ABIE40_RS24175 0.33 -0.7
981,437 + ABIE40_RS24175 0.33 +0.1
981,437 + ABIE40_RS24175 0.33 +0.0
981,437 + ABIE40_RS24175 0.33 -0.5
981,437 + ABIE40_RS24175 0.33 -1.0
981,438 - ABIE40_RS24175 0.33 +1.6
981,438 - ABIE40_RS24175 0.33 -0.6
981,438 - ABIE40_RS24175 0.33 +2.0
981,438 - ABIE40_RS24175 0.33 +0.4
981,458 - ABIE40_RS24175 0.35 -2.6
981,536 + ABIE40_RS24175 0.43 +0.4
981,536 + ABIE40_RS24175 0.43 -0.1
981,536 + ABIE40_RS24175 0.43 -0.6
981,537 - ABIE40_RS24175 0.43 +2.0
981,537 - ABIE40_RS24175 0.43 +1.0
981,538 + ABIE40_RS24175 0.43 -0.9
981,539 - ABIE40_RS24175 0.44 -1.1
981,539 - ABIE40_RS24175 0.44 -0.8
981,627 - ABIE40_RS24175 0.53 -0.3
981,627 - ABIE40_RS24175 0.53 -0.3
981,627 - ABIE40_RS24175 0.53 -0.1
981,822 + ABIE40_RS24175 0.74 -1.1
981,822 + ABIE40_RS24175 0.74 -0.2
981,860 + ABIE40_RS24175 0.78 +1.4
981,861 - ABIE40_RS24175 0.78 +0.3
981,861 - ABIE40_RS24175 0.78 +0.1
981,861 - ABIE40_RS24175 0.78 -1.2
981,861 - ABIE40_RS24175 0.78 +2.2
981,863 + ABIE40_RS24175 0.78 +0.1
981,863 + ABIE40_RS24175 0.78 +1.1
981,863 + ABIE40_RS24175 0.78 +0.1
981,864 - ABIE40_RS24175 0.78 -1.5
982,036 + +0.8
982,050 + +0.3
982,050 + +0.7
982,050 + +1.4
982,070 - -0.4

Or see this region's nucleotide sequence