Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03080 and ABIE40_RS03085 are separated by 2 nucleotides ABIE40_RS03085 and ABIE40_RS03090 are separated by 29 nucleotides ABIE40_RS03090 and ABIE40_RS03095 overlap by 4 nucleotides ABIE40_RS03095 and ABIE40_RS03100 overlap by 10 nucleotides
ABIE40_RS03080: ABIE40_RS03080 - flagellar hook-associated protein FlgK, at 608,061 to 609,605
_RS03080
ABIE40_RS03085: ABIE40_RS03085 - flagellar hook-associated family protein, at 609,608 to 610,732
_RS03085
ABIE40_RS03090: ABIE40_RS03090 - flagellar biosynthesis regulator FlaF, at 610,762 to 611,109
_RS03090
ABIE40_RS03095: ABIE40_RS03095 - flagellar biosynthesis repressor FlbT, at 611,106 to 611,555
_RS03095
ABIE40_RS03100: ABIE40_RS03100 - flagellar hook assembly protein FlgD, at 611,546 to 612,031
_RS03100
Position (kb) 609
610
611 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 608.719 kb on - strand, within ABIE40_RS03080 at 608.787 kb on + strand, within ABIE40_RS03080 at 608.787 kb on + strand, within ABIE40_RS03080 at 608.788 kb on - strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.817 kb on + strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.818 kb on - strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 608.819 kb on + strand, within ABIE40_RS03080 at 609.059 kb on + strand, within ABIE40_RS03080 at 609.118 kb on + strand, within ABIE40_RS03080 at 609.118 kb on + strand, within ABIE40_RS03080 at 609.118 kb on + strand, within ABIE40_RS03080 at 609.119 kb on - strand, within ABIE40_RS03080 at 609.119 kb on - strand, within ABIE40_RS03080 at 609.119 kb on - strand, within ABIE40_RS03080 at 609.214 kb on - strand, within ABIE40_RS03080 at 609.230 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.267 kb on + strand, within ABIE40_RS03080 at 609.268 kb on - strand, within ABIE40_RS03080 at 609.268 kb on - strand, within ABIE40_RS03080 at 609.268 kb on - strand, within ABIE40_RS03080 at 609.270 kb on + strand, within ABIE40_RS03080 at 609.270 kb on + strand, within ABIE40_RS03080 at 609.270 kb on + strand, within ABIE40_RS03080 at 609.271 kb on - strand, within ABIE40_RS03080 at 609.271 kb on - strand, within ABIE40_RS03080 at 609.316 kb on + strand, within ABIE40_RS03080 at 609.317 kb on - strand, within ABIE40_RS03080 at 609.317 kb on - strand, within ABIE40_RS03080 at 609.403 kb on - strand, within ABIE40_RS03080 at 609.468 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.534 kb on + strand at 609.535 kb on - strand at 609.535 kb on - strand at 609.628 kb on + strand at 609.790 kb on + strand, within ABIE40_RS03085 at 609.791 kb on - strand, within ABIE40_RS03085 at 609.791 kb on - strand, within ABIE40_RS03085 at 610.010 kb on + strand, within ABIE40_RS03085 at 610.011 kb on - strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.100 kb on + strand, within ABIE40_RS03085 at 610.268 kb on + strand, within ABIE40_RS03085 at 610.268 kb on + strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.269 kb on - strand, within ABIE40_RS03085 at 610.391 kb on + strand, within ABIE40_RS03085 at 610.484 kb on + strand, within ABIE40_RS03085 at 610.484 kb on + strand, within ABIE40_RS03085 at 610.484 kb on + strand, within ABIE40_RS03085 at 610.485 kb on - strand, within ABIE40_RS03085 at 610.485 kb on - strand, within ABIE40_RS03085 at 610.485 kb on - strand, within ABIE40_RS03085 at 610.682 kb on + strand at 610.682 kb on + strand at 610.683 kb on - strand at 610.743 kb on + strand at 610.747 kb on + strand at 610.747 kb on + strand at 610.748 kb on - strand at 610.748 kb on - strand at 610.765 kb on + strand at 610.765 kb on + strand at 610.766 kb on - strand at 610.766 kb on - strand at 610.777 kb on + strand at 610.882 kb on + strand, within ABIE40_RS03090 at 610.912 kb on + strand, within ABIE40_RS03090 at 611.059 kb on + strand, within ABIE40_RS03090 at 611.059 kb on + strand, within ABIE40_RS03090 at 611.059 kb on + strand, within ABIE40_RS03090 at 611.060 kb on - strand, within ABIE40_RS03090 at 611.060 kb on - strand, within ABIE40_RS03090 at 611.079 kb on + strand at 611.079 kb on + strand at 611.103 kb on + strand at 611.103 kb on + strand at 611.103 kb on + strand at 611.103 kb on + strand at 611.104 kb on - strand at 611.104 kb on - strand at 611.104 kb on - strand at 611.104 kb on - strand at 611.277 kb on + strand, within ABIE40_RS03095 at 611.277 kb on + strand, within ABIE40_RS03095 at 611.387 kb on + strand, within ABIE40_RS03095 at 611.466 kb on + strand, within ABIE40_RS03095 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.630 kb on + strand, within ABIE40_RS03100 at 611.631 kb on - strand, within ABIE40_RS03100 at 611.635 kb on + strand, within ABIE40_RS03100 at 611.635 kb on + strand, within ABIE40_RS03100 at 611.692 kb on - strand, within ABIE40_RS03100 at 611.692 kb on - strand, within ABIE40_RS03100
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 608,719 - ABIE40_RS03080 0.43 -0.5 608,787 + ABIE40_RS03080 0.47 +0.1 608,787 + ABIE40_RS03080 0.47 +0.6 608,788 - ABIE40_RS03080 0.47 -0.8 608,817 + ABIE40_RS03080 0.49 -2.7 608,817 + ABIE40_RS03080 0.49 -2.7 608,817 + ABIE40_RS03080 0.49 -0.5 608,817 + ABIE40_RS03080 0.49 -3.2 608,817 + ABIE40_RS03080 0.49 -2.1 608,817 + ABIE40_RS03080 0.49 -1.4 608,817 + ABIE40_RS03080 0.49 -1.4 608,818 - ABIE40_RS03080 0.49 +0.8 608,818 - ABIE40_RS03080 0.49 -1.2 608,818 - ABIE40_RS03080 0.49 -0.2 608,818 - ABIE40_RS03080 0.49 -1.2 608,819 + ABIE40_RS03080 0.49 -0.9 608,819 + ABIE40_RS03080 0.49 -1.5 608,819 + ABIE40_RS03080 0.49 -2.3 608,819 + ABIE40_RS03080 0.49 -2.2 609,059 + ABIE40_RS03080 0.65 +0.1 609,118 + ABIE40_RS03080 0.68 +0.5 609,118 + ABIE40_RS03080 0.68 -1.4 609,118 + ABIE40_RS03080 0.68 -1.2 609,119 - ABIE40_RS03080 0.68 -1.1 609,119 - ABIE40_RS03080 0.68 +1.8 609,119 - ABIE40_RS03080 0.68 -2.2 609,214 - ABIE40_RS03080 0.75 -0.5 609,230 + ABIE40_RS03080 0.76 -1.9 609,267 + ABIE40_RS03080 0.78 -1.4 609,267 + ABIE40_RS03080 0.78 -0.7 609,267 + ABIE40_RS03080 0.78 -0.6 609,267 + ABIE40_RS03080 0.78 -2.1 609,267 + ABIE40_RS03080 0.78 -1.9 609,267 + ABIE40_RS03080 0.78 -0.7 609,268 - ABIE40_RS03080 0.78 -0.2 609,268 - ABIE40_RS03080 0.78 -2.1 609,268 - ABIE40_RS03080 0.78 -1.6 609,270 + ABIE40_RS03080 0.78 -1.1 609,270 + ABIE40_RS03080 0.78 -1.4 609,270 + ABIE40_RS03080 0.78 -0.7 609,271 - ABIE40_RS03080 0.78 -1.2 609,271 - ABIE40_RS03080 0.78 -0.8 609,316 + ABIE40_RS03080 0.81 +1.1 609,317 - ABIE40_RS03080 0.81 +1.8 609,317 - ABIE40_RS03080 0.81 -1.0 609,403 - ABIE40_RS03080 0.87 +1.1 609,468 + +0.0 609,534 + -1.3 609,534 + -0.4 609,534 + -1.4 609,534 + +0.3 609,534 + -1.3 609,534 + +0.5 609,534 + -0.8 609,535 - -1.5 609,535 - +1.8 609,628 + -2.9 609,790 + ABIE40_RS03085 0.16 +0.8 609,791 - ABIE40_RS03085 0.16 -2.1 609,791 - ABIE40_RS03085 0.16 +0.2 610,010 + ABIE40_RS03085 0.36 -1.1 610,011 - ABIE40_RS03085 0.36 -0.3 610,100 + ABIE40_RS03085 0.44 +0.7 610,100 + ABIE40_RS03085 0.44 -1.0 610,100 + ABIE40_RS03085 0.44 -0.0 610,100 + ABIE40_RS03085 0.44 -0.7 610,268 + ABIE40_RS03085 0.59 -1.6 610,268 + ABIE40_RS03085 0.59 -1.3 610,269 - ABIE40_RS03085 0.59 -1.2 610,269 - ABIE40_RS03085 0.59 -1.2 610,269 - ABIE40_RS03085 0.59 -1.9 610,269 - ABIE40_RS03085 0.59 -1.2 610,269 - ABIE40_RS03085 0.59 -0.2 610,269 - ABIE40_RS03085 0.59 -0.5 610,269 - ABIE40_RS03085 0.59 +0.1 610,391 + ABIE40_RS03085 0.70 +2.3 610,484 + ABIE40_RS03085 0.78 -0.2 610,484 + ABIE40_RS03085 0.78 -0.6 610,484 + ABIE40_RS03085 0.78 -0.5 610,485 - ABIE40_RS03085 0.78 +1.8 610,485 - ABIE40_RS03085 0.78 -3.5 610,485 - ABIE40_RS03085 0.78 +1.8 610,682 + +1.2 610,682 + -0.1 610,683 - -1.4 610,743 + -0.5 610,747 + -0.0 610,747 + +0.2 610,748 - +0.8 610,748 - -1.5 610,765 + -1.2 610,765 + -1.6 610,766 - -2.5 610,766 - +1.8 610,777 + -0.5 610,882 + ABIE40_RS03090 0.34 -1.2 610,912 + ABIE40_RS03090 0.43 -0.0 611,059 + ABIE40_RS03090 0.85 -0.9 611,059 + ABIE40_RS03090 0.85 -1.0 611,059 + ABIE40_RS03090 0.85 -0.1 611,060 - ABIE40_RS03090 0.86 -1.2 611,060 - ABIE40_RS03090 0.86 -3.9 611,079 + -1.3 611,079 + +0.8 611,103 + -1.0 611,103 + -1.2 611,103 + +0.5 611,103 + -1.2 611,104 - +0.2 611,104 - -1.4 611,104 - +0.5 611,104 - +0.8 611,277 + ABIE40_RS03095 0.38 -1.7 611,277 + ABIE40_RS03095 0.38 +1.5 611,387 + ABIE40_RS03095 0.62 -2.0 611,466 + ABIE40_RS03095 0.80 -1.5 611,630 + ABIE40_RS03100 0.17 +0.2 611,630 + ABIE40_RS03100 0.17 -1.7 611,630 + ABIE40_RS03100 0.17 -1.1 611,630 + ABIE40_RS03100 0.17 +0.8 611,631 - ABIE40_RS03100 0.17 -0.5 611,635 + ABIE40_RS03100 0.18 +0.1 611,635 + ABIE40_RS03100 0.18 -0.8 611,692 - ABIE40_RS03100 0.30 -1.0 611,692 - ABIE40_RS03100 0.30 -0.3
Or see this region's nucleotide sequence