Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01335

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01330 and ABIE40_RS01335 are separated by 113 nucleotidesABIE40_RS01335 and ABIE40_RS01340 are separated by 91 nucleotides ABIE40_RS01330: ABIE40_RS01330 - complex I NDUFA9 subunit family protein, at 262,308 to 263,288 _RS01330 ABIE40_RS01335: ABIE40_RS01335 - DUF1330 domain-containing protein, at 263,402 to 263,689 _RS01335 ABIE40_RS01340: ABIE40_RS01340 - NosD domain-containing protein, at 263,781 to 264,830 _RS01340 Position (kb) 263 264Strain fitness (log2 ratio) -2 -1 0 1 2 3at 262.459 kb on + strand, within ABIE40_RS01330at 262.460 kb on - strand, within ABIE40_RS01330at 262.460 kb on - strand, within ABIE40_RS01330at 262.645 kb on + strand, within ABIE40_RS01330at 262.645 kb on + strand, within ABIE40_RS01330at 262.646 kb on - strand, within ABIE40_RS01330at 262.711 kb on + strand, within ABIE40_RS01330at 262.712 kb on - strand, within ABIE40_RS01330at 262.860 kb on + strand, within ABIE40_RS01330at 262.860 kb on + strand, within ABIE40_RS01330at 262.894 kb on + strand, within ABIE40_RS01330at 262.894 kb on + strand, within ABIE40_RS01330at 262.894 kb on + strand, within ABIE40_RS01330at 262.894 kb on + strand, within ABIE40_RS01330at 262.894 kb on + strand, within ABIE40_RS01330at 262.894 kb on + strand, within ABIE40_RS01330at 262.895 kb on - strand, within ABIE40_RS01330at 262.895 kb on - strand, within ABIE40_RS01330at 263.195 kb on - strandat 263.335 kb on + strandat 263.336 kb on - strandat 263.336 kb on - strandat 263.338 kb on + strandat 263.339 kb on - strandat 263.469 kb on + strand, within ABIE40_RS01335at 263.484 kb on + strand, within ABIE40_RS01335at 263.484 kb on + strand, within ABIE40_RS01335at 263.485 kb on - strand, within ABIE40_RS01335at 263.485 kb on - strand, within ABIE40_RS01335at 263.485 kb on - strand, within ABIE40_RS01335at 263.485 kb on - strand, within ABIE40_RS01335at 263.485 kb on - strand, within ABIE40_RS01335at 263.485 kb on - strand, within ABIE40_RS01335at 263.595 kb on + strand, within ABIE40_RS01335at 263.595 kb on + strand, within ABIE40_RS01335at 263.596 kb on - strand, within ABIE40_RS01335at 263.596 kb on - strand, within ABIE40_RS01335at 263.596 kb on - strand, within ABIE40_RS01335at 263.596 kb on - strand, within ABIE40_RS01335at 263.596 kb on - strand, within ABIE40_RS01335at 263.628 kb on + strand, within ABIE40_RS01335at 263.628 kb on + strand, within ABIE40_RS01335at 263.628 kb on + strand, within ABIE40_RS01335at 263.628 kb on + strand, within ABIE40_RS01335at 263.628 kb on + strand, within ABIE40_RS01335at 263.677 kb on - strandat 263.757 kb on + strandat 263.757 kb on + strandat 263.758 kb on - strandat 263.758 kb on - strandat 263.758 kb on - strandat 263.986 kb on + strand, within ABIE40_RS01340at 264.052 kb on - strand, within ABIE40_RS01340at 264.167 kb on + strand, within ABIE40_RS01340at 264.167 kb on + strand, within ABIE40_RS01340at 264.168 kb on - strand, within ABIE40_RS01340at 264.168 kb on - strand, within ABIE40_RS01340at 264.224 kb on + strand, within ABIE40_RS01340at 264.224 kb on + strand, within ABIE40_RS01340at 264.224 kb on + strand, within ABIE40_RS01340at 264.338 kb on - strand, within ABIE40_RS01340at 264.338 kb on - strand, within ABIE40_RS01340at 264.338 kb on - strand, within ABIE40_RS01340at 264.381 kb on + strand, within ABIE40_RS01340at 264.381 kb on + strand, within ABIE40_RS01340at 264.381 kb on + strand, within ABIE40_RS01340at 264.382 kb on - strand, within ABIE40_RS01340at 264.497 kb on + strand, within ABIE40_RS01340at 264.498 kb on - strand, within ABIE40_RS01340at 264.498 kb on - strand, within ABIE40_RS01340at 264.498 kb on - strand, within ABIE40_RS01340at 264.498 kb on - strand, within ABIE40_RS01340at 264.498 kb on - strand, within ABIE40_RS01340at 264.534 kb on + strand, within ABIE40_RS01340at 264.534 kb on + strand, within ABIE40_RS01340at 264.592 kb on + strand, within ABIE40_RS01340at 264.612 kb on + strand, within ABIE40_RS01340at 264.612 kb on + strand, within ABIE40_RS01340at 264.612 kb on + strand, within ABIE40_RS01340at 264.613 kb on - strand, within ABIE40_RS01340at 264.613 kb on - strand, within ABIE40_RS01340at 264.613 kb on - strand, within ABIE40_RS01340

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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262,459 + ABIE40_RS01330 0.15 -1.6
262,460 - ABIE40_RS01330 0.15 -0.5
262,460 - ABIE40_RS01330 0.15 -1.0
262,645 + ABIE40_RS01330 0.34 +0.1
262,645 + ABIE40_RS01330 0.34 -0.8
262,646 - ABIE40_RS01330 0.34 -0.3
262,711 + ABIE40_RS01330 0.41 +0.2
262,712 - ABIE40_RS01330 0.41 +1.7
262,860 + ABIE40_RS01330 0.56 -0.6
262,860 + ABIE40_RS01330 0.56 +0.5
262,894 + ABIE40_RS01330 0.60 +0.1
262,894 + ABIE40_RS01330 0.60 +0.9
262,894 + ABIE40_RS01330 0.60 -1.0
262,894 + ABIE40_RS01330 0.60 -1.6
262,894 + ABIE40_RS01330 0.60 +0.5
262,894 + ABIE40_RS01330 0.60 -0.9
262,895 - ABIE40_RS01330 0.60 +0.2
262,895 - ABIE40_RS01330 0.60 -0.8
263,195 - -0.1
263,335 + -0.2
263,336 - -1.0
263,336 - +0.3
263,338 + +0.7
263,339 - -2.5
263,469 + ABIE40_RS01335 0.23 +2.7
263,484 + ABIE40_RS01335 0.28 -0.2
263,484 + ABIE40_RS01335 0.28 -0.7
263,485 - ABIE40_RS01335 0.29 +2.0
263,485 - ABIE40_RS01335 0.29 -0.2
263,485 - ABIE40_RS01335 0.29 -1.0
263,485 - ABIE40_RS01335 0.29 -0.5
263,485 - ABIE40_RS01335 0.29 -1.1
263,485 - ABIE40_RS01335 0.29 +0.8
263,595 + ABIE40_RS01335 0.67 -1.1
263,595 + ABIE40_RS01335 0.67 +0.2
263,596 - ABIE40_RS01335 0.67 +1.2
263,596 - ABIE40_RS01335 0.67 +1.2
263,596 - ABIE40_RS01335 0.67 +0.3
263,596 - ABIE40_RS01335 0.67 +0.8
263,596 - ABIE40_RS01335 0.67 +0.0
263,628 + ABIE40_RS01335 0.78 -1.1
263,628 + ABIE40_RS01335 0.78 +2.8
263,628 + ABIE40_RS01335 0.78 -0.6
263,628 + ABIE40_RS01335 0.78 +0.6
263,628 + ABIE40_RS01335 0.78 +0.3
263,677 - +0.7
263,757 + -0.3
263,757 + +0.4
263,758 - -0.1
263,758 - +0.1
263,758 - -1.0
263,986 + ABIE40_RS01340 0.20 +0.3
264,052 - ABIE40_RS01340 0.26 -0.1
264,167 + ABIE40_RS01340 0.37 +0.2
264,167 + ABIE40_RS01340 0.37 +0.0
264,168 - ABIE40_RS01340 0.37 +1.0
264,168 - ABIE40_RS01340 0.37 +1.0
264,224 + ABIE40_RS01340 0.42 -0.2
264,224 + ABIE40_RS01340 0.42 -0.8
264,224 + ABIE40_RS01340 0.42 -2.0
264,338 - ABIE40_RS01340 0.53 +0.2
264,338 - ABIE40_RS01340 0.53 +0.2
264,338 - ABIE40_RS01340 0.53 -0.2
264,381 + ABIE40_RS01340 0.57 +0.1
264,381 + ABIE40_RS01340 0.57 +0.8
264,381 + ABIE40_RS01340 0.57 +0.7
264,382 - ABIE40_RS01340 0.57 -0.6
264,497 + ABIE40_RS01340 0.68 +0.7
264,498 - ABIE40_RS01340 0.68 -1.1
264,498 - ABIE40_RS01340 0.68 -0.4
264,498 - ABIE40_RS01340 0.68 -0.9
264,498 - ABIE40_RS01340 0.68 -0.4
264,498 - ABIE40_RS01340 0.68 -0.2
264,534 + ABIE40_RS01340 0.72 -0.2
264,534 + ABIE40_RS01340 0.72 -0.3
264,592 + ABIE40_RS01340 0.77 -0.6
264,612 + ABIE40_RS01340 0.79 +2.1
264,612 + ABIE40_RS01340 0.79 +2.5
264,612 + ABIE40_RS01340 0.79 -0.1
264,613 - ABIE40_RS01340 0.79 -1.0
264,613 - ABIE40_RS01340 0.79 -0.2
264,613 - ABIE40_RS01340 0.79 +0.4

Or see this region's nucleotide sequence