Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30950 and ABIE40_RS30955 overlap by 4 nucleotides ABIE40_RS30955 and ABIE40_RS30960 overlap by 4 nucleotides
ABIE40_RS30950: ABIE40_RS30950 - NAD-dependent epimerase/dehydratase family protein, at 884,784 to 886,826
_RS30950
ABIE40_RS30955: ABIE40_RS30955 - glycosyltransferase family 4 protein, at 886,823 to 887,944
_RS30955
ABIE40_RS30960: ABIE40_RS30960 - glycosyltransferase, at 887,941 to 889,071
_RS30960
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 885.856 kb on + strand, within ABIE40_RS30950 at 886.034 kb on - strand, within ABIE40_RS30950 at 886.034 kb on - strand, within ABIE40_RS30950 at 886.101 kb on - strand, within ABIE40_RS30950 at 886.149 kb on + strand, within ABIE40_RS30950 at 886.149 kb on + strand, within ABIE40_RS30950 at 886.150 kb on - strand, within ABIE40_RS30950 at 886.189 kb on - strand, within ABIE40_RS30950 at 886.189 kb on - strand, within ABIE40_RS30950 at 886.194 kb on + strand, within ABIE40_RS30950 at 886.195 kb on - strand, within ABIE40_RS30950 at 886.296 kb on + strand, within ABIE40_RS30950 at 886.296 kb on + strand, within ABIE40_RS30950 at 886.309 kb on - strand, within ABIE40_RS30950 at 886.672 kb on - strand at 886.678 kb on + strand at 887.164 kb on + strand, within ABIE40_RS30955 at 887.165 kb on - strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.197 kb on - strand, within ABIE40_RS30955 at 887.197 kb on - strand, within ABIE40_RS30955 at 887.414 kb on + strand, within ABIE40_RS30955 at 887.414 kb on + strand, within ABIE40_RS30955 at 887.414 kb on + strand, within ABIE40_RS30955 at 887.415 kb on - strand, within ABIE40_RS30955 at 887.415 kb on - strand, within ABIE40_RS30955 at 887.936 kb on + strand at 887.936 kb on + strand at 887.956 kb on + strand at 888.069 kb on + strand, within ABIE40_RS30960 at 888.069 kb on + strand, within ABIE40_RS30960 at 888.070 kb on - strand, within ABIE40_RS30960 at 888.358 kb on + strand, within ABIE40_RS30960 at 888.400 kb on + strand, within ABIE40_RS30960 at 888.400 kb on + strand, within ABIE40_RS30960 at 888.554 kb on - strand, within ABIE40_RS30960 at 888.554 kb on - strand, within ABIE40_RS30960 at 888.649 kb on - strand, within ABIE40_RS30960 at 888.655 kb on + strand, within ABIE40_RS30960 at 888.655 kb on + strand, within ABIE40_RS30960 at 888.737 kb on - strand, within ABIE40_RS30960 at 888.857 kb on - strand, within ABIE40_RS30960 at 888.857 kb on - strand, within ABIE40_RS30960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 885,856 + ABIE40_RS30950 0.52 -0.3 886,034 - ABIE40_RS30950 0.61 -1.5 886,034 - ABIE40_RS30950 0.61 -0.7 886,101 - ABIE40_RS30950 0.64 -3.1 886,149 + ABIE40_RS30950 0.67 -1.4 886,149 + ABIE40_RS30950 0.67 +1.3 886,150 - ABIE40_RS30950 0.67 -0.3 886,189 - ABIE40_RS30950 0.69 +0.1 886,189 - ABIE40_RS30950 0.69 -1.3 886,194 + ABIE40_RS30950 0.69 -2.0 886,195 - ABIE40_RS30950 0.69 -0.7 886,296 + ABIE40_RS30950 0.74 +0.3 886,296 + ABIE40_RS30950 0.74 +3.6 886,309 - ABIE40_RS30950 0.75 +1.1 886,672 - +2.3 886,678 + -0.0 887,164 + ABIE40_RS30955 0.30 -0.9 887,165 - ABIE40_RS30955 0.30 +1.0 887,196 + ABIE40_RS30955 0.33 +1.3 887,196 + ABIE40_RS30955 0.33 -0.9 887,196 + ABIE40_RS30955 0.33 +2.3 887,196 + ABIE40_RS30955 0.33 +1.7 887,196 + ABIE40_RS30955 0.33 +1.3 887,196 + ABIE40_RS30955 0.33 -0.9 887,197 - ABIE40_RS30955 0.33 +1.3 887,197 - ABIE40_RS30955 0.33 -0.0 887,414 + ABIE40_RS30955 0.53 -1.5 887,414 + ABIE40_RS30955 0.53 +1.3 887,414 + ABIE40_RS30955 0.53 +0.3 887,415 - ABIE40_RS30955 0.53 -0.9 887,415 - ABIE40_RS30955 0.53 -0.5 887,936 + -0.1 887,936 + -0.8 887,956 + +0.3 888,069 + ABIE40_RS30960 0.11 -0.7 888,069 + ABIE40_RS30960 0.11 -2.2 888,070 - ABIE40_RS30960 0.11 -0.5 888,358 + ABIE40_RS30960 0.37 +0.3 888,400 + ABIE40_RS30960 0.41 -0.8 888,400 + ABIE40_RS30960 0.41 +0.7 888,554 - ABIE40_RS30960 0.54 +1.3 888,554 - ABIE40_RS30960 0.54 +0.5 888,649 - ABIE40_RS30960 0.63 +2.3 888,655 + ABIE40_RS30960 0.63 +1.1 888,655 + ABIE40_RS30960 0.63 -0.9 888,737 - ABIE40_RS30960 0.70 +2.3 888,857 - ABIE40_RS30960 0.81 -1.7 888,857 - ABIE40_RS30960 0.81 -0.8
Or see this region's nucleotide sequence