Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29875

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29870 and ABIE40_RS29875 are separated by 69 nucleotidesABIE40_RS29875 and ABIE40_RS29880 are separated by 26 nucleotidesABIE40_RS29880 and ABIE40_RS29885 overlap by 11 nucleotides ABIE40_RS29870: ABIE40_RS29870 - transporter substrate-binding domain-containing protein, at 666,273 to 667,100 _RS29870 ABIE40_RS29875: ABIE40_RS29875 - FAD-binding oxidoreductase, at 667,170 to 668,450 _RS29875 ABIE40_RS29880: ABIE40_RS29880 - amino acid ABC transporter permease, at 668,477 to 669,448 _RS29880 ABIE40_RS29885: ABIE40_RS29885 - DMT family transporter, at 669,438 to 670,322 _RS29885 Position (kb) 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 666.235 kb on + strandat 666.235 kb on + strandat 666.235 kb on + strandat 666.363 kb on - strand, within ABIE40_RS29870at 666.363 kb on - strand, within ABIE40_RS29870at 666.418 kb on - strand, within ABIE40_RS29870at 666.552 kb on + strand, within ABIE40_RS29870at 666.553 kb on - strand, within ABIE40_RS29870at 666.553 kb on - strand, within ABIE40_RS29870at 666.553 kb on - strand, within ABIE40_RS29870at 666.553 kb on - strand, within ABIE40_RS29870at 666.621 kb on + strand, within ABIE40_RS29870at 666.621 kb on + strand, within ABIE40_RS29870at 666.622 kb on - strand, within ABIE40_RS29870at 666.622 kb on - strand, within ABIE40_RS29870at 666.622 kb on - strand, within ABIE40_RS29870at 666.622 kb on - strand, within ABIE40_RS29870at 666.622 kb on - strand, within ABIE40_RS29870at 666.624 kb on + strand, within ABIE40_RS29870at 666.625 kb on - strand, within ABIE40_RS29870at 666.628 kb on - strand, within ABIE40_RS29870at 666.628 kb on - strand, within ABIE40_RS29870at 666.637 kb on - strand, within ABIE40_RS29870at 666.637 kb on - strand, within ABIE40_RS29870at 666.637 kb on - strand, within ABIE40_RS29870at 666.637 kb on - strand, within ABIE40_RS29870at 666.643 kb on - strand, within ABIE40_RS29870at 666.643 kb on - strand, within ABIE40_RS29870at 666.643 kb on - strand, within ABIE40_RS29870at 666.643 kb on - strand, within ABIE40_RS29870at 666.643 kb on - strand, within ABIE40_RS29870at 666.643 kb on - strand, within ABIE40_RS29870at 666.862 kb on + strand, within ABIE40_RS29870at 666.862 kb on + strand, within ABIE40_RS29870at 666.863 kb on - strand, within ABIE40_RS29870at 666.863 kb on - strand, within ABIE40_RS29870at 666.863 kb on - strand, within ABIE40_RS29870at 666.866 kb on + strand, within ABIE40_RS29870at 667.012 kb on + strand, within ABIE40_RS29870at 667.013 kb on - strand, within ABIE40_RS29870at 667.013 kb on - strand, within ABIE40_RS29870at 667.086 kb on + strandat 667.086 kb on + strandat 667.087 kb on - strandat 667.098 kb on + strandat 667.099 kb on - strandat 667.176 kb on + strandat 667.177 kb on - strandat 667.188 kb on + strandat 667.188 kb on + strandat 667.189 kb on - strandat 667.189 kb on - strandat 667.189 kb on - strandat 667.189 kb on - strandat 667.191 kb on + strandat 667.192 kb on - strandat 667.192 kb on - strandat 667.451 kb on + strand, within ABIE40_RS29875at 667.452 kb on - strand, within ABIE40_RS29875at 667.462 kb on + strand, within ABIE40_RS29875at 667.462 kb on + strand, within ABIE40_RS29875at 667.585 kb on - strand, within ABIE40_RS29875at 667.585 kb on - strand, within ABIE40_RS29875at 667.585 kb on - strand, within ABIE40_RS29875at 667.608 kb on + strand, within ABIE40_RS29875at 667.671 kb on + strand, within ABIE40_RS29875at 667.722 kb on + strand, within ABIE40_RS29875at 667.722 kb on + strand, within ABIE40_RS29875at 667.723 kb on - strand, within ABIE40_RS29875at 667.823 kb on - strand, within ABIE40_RS29875at 667.823 kb on - strand, within ABIE40_RS29875at 667.823 kb on - strand, within ABIE40_RS29875at 667.823 kb on - strand, within ABIE40_RS29875at 667.878 kb on + strand, within ABIE40_RS29875at 667.932 kb on + strand, within ABIE40_RS29875at 667.933 kb on - strand, within ABIE40_RS29875at 667.933 kb on - strand, within ABIE40_RS29875at 668.022 kb on + strand, within ABIE40_RS29875at 668.022 kb on + strand, within ABIE40_RS29875at 668.023 kb on - strand, within ABIE40_RS29875at 668.023 kb on - strand, within ABIE40_RS29875at 668.025 kb on + strand, within ABIE40_RS29875at 668.026 kb on - strand, within ABIE40_RS29875at 668.049 kb on + strand, within ABIE40_RS29875at 668.190 kb on + strand, within ABIE40_RS29875at 668.190 kb on + strand, within ABIE40_RS29875at 668.191 kb on - strand, within ABIE40_RS29875at 668.191 kb on - strand, within ABIE40_RS29875at 668.399 kb on + strandat 668.399 kb on + strandat 668.400 kb on - strandat 668.400 kb on - strandat 668.493 kb on + strandat 668.493 kb on + strandat 668.564 kb on + strandat 668.667 kb on + strand, within ABIE40_RS29880at 668.668 kb on - strand, within ABIE40_RS29880at 668.681 kb on - strand, within ABIE40_RS29880at 668.746 kb on - strand, within ABIE40_RS29880at 668.746 kb on - strand, within ABIE40_RS29880at 668.778 kb on - strand, within ABIE40_RS29880at 668.855 kb on + strand, within ABIE40_RS29880at 668.856 kb on - strand, within ABIE40_RS29880at 668.856 kb on - strand, within ABIE40_RS29880at 668.879 kb on - strand, within ABIE40_RS29880at 668.940 kb on - strand, within ABIE40_RS29880at 668.958 kb on - strand, within ABIE40_RS29880at 668.958 kb on - strand, within ABIE40_RS29880at 668.958 kb on - strand, within ABIE40_RS29880at 668.999 kb on + strand, within ABIE40_RS29880at 668.999 kb on + strand, within ABIE40_RS29880at 668.999 kb on + strand, within ABIE40_RS29880at 669.000 kb on - strand, within ABIE40_RS29880at 669.000 kb on - strand, within ABIE40_RS29880at 669.000 kb on - strand, within ABIE40_RS29880at 669.000 kb on - strand, within ABIE40_RS29880at 669.000 kb on - strand, within ABIE40_RS29880at 669.002 kb on - strand, within ABIE40_RS29880at 669.002 kb on - strand, within ABIE40_RS29880at 669.002 kb on - strand, within ABIE40_RS29880at 669.009 kb on - strand, within ABIE40_RS29880at 669.033 kb on - strand, within ABIE40_RS29880at 669.081 kb on - strand, within ABIE40_RS29880at 669.089 kb on + strand, within ABIE40_RS29880at 669.091 kb on + strand, within ABIE40_RS29880at 669.151 kb on + strand, within ABIE40_RS29880at 669.302 kb on + strand, within ABIE40_RS29880at 669.302 kb on + strand, within ABIE40_RS29880at 669.302 kb on + strand, within ABIE40_RS29880at 669.303 kb on - strand, within ABIE40_RS29880at 669.303 kb on - strand, within ABIE40_RS29880at 669.371 kb on + strandat 669.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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666,235 + +1.0
666,235 + +0.5
666,235 + -0.4
666,363 - ABIE40_RS29870 0.11 -0.5
666,363 - ABIE40_RS29870 0.11 -0.0
666,418 - ABIE40_RS29870 0.18 +2.1
666,552 + ABIE40_RS29870 0.34 +0.3
666,553 - ABIE40_RS29870 0.34 -0.3
666,553 - ABIE40_RS29870 0.34 -2.5
666,553 - ABIE40_RS29870 0.34 +0.8
666,553 - ABIE40_RS29870 0.34 -0.5
666,621 + ABIE40_RS29870 0.42 +0.8
666,621 + ABIE40_RS29870 0.42 +0.0
666,622 - ABIE40_RS29870 0.42 +2.1
666,622 - ABIE40_RS29870 0.42 +1.1
666,622 - ABIE40_RS29870 0.42 -0.5
666,622 - ABIE40_RS29870 0.42 -0.9
666,622 - ABIE40_RS29870 0.42 -1.3
666,624 + ABIE40_RS29870 0.42 -0.5
666,625 - ABIE40_RS29870 0.43 -0.2
666,628 - ABIE40_RS29870 0.43 -0.5
666,628 - ABIE40_RS29870 0.43 -0.1
666,637 - ABIE40_RS29870 0.44 -0.9
666,637 - ABIE40_RS29870 0.44 +1.1
666,637 - ABIE40_RS29870 0.44 -0.5
666,637 - ABIE40_RS29870 0.44 -0.7
666,643 - ABIE40_RS29870 0.45 +0.1
666,643 - ABIE40_RS29870 0.45 -2.5
666,643 - ABIE40_RS29870 0.45 -2.8
666,643 - ABIE40_RS29870 0.45 +1.7
666,643 - ABIE40_RS29870 0.45 -1.6
666,643 - ABIE40_RS29870 0.45 -0.7
666,862 + ABIE40_RS29870 0.71 +0.1
666,862 + ABIE40_RS29870 0.71 +0.1
666,863 - ABIE40_RS29870 0.71 +0.4
666,863 - ABIE40_RS29870 0.71 -1.2
666,863 - ABIE40_RS29870 0.71 +2.1
666,866 + ABIE40_RS29870 0.72 -0.1
667,012 + ABIE40_RS29870 0.89 +0.5
667,013 - ABIE40_RS29870 0.89 -0.7
667,013 - ABIE40_RS29870 0.89 -0.5
667,086 + +1.1
667,086 + +0.1
667,087 - -1.0
667,098 + +0.3
667,099 - +2.1
667,176 + -0.2
667,177 - +1.0
667,188 + -0.6
667,188 + -0.2
667,189 - -0.4
667,189 - -0.2
667,189 - +1.0
667,189 - -0.2
667,191 + -0.2
667,192 - -1.2
667,192 - +0.4
667,451 + ABIE40_RS29875 0.22 +2.1
667,452 - ABIE40_RS29875 0.22 -0.2
667,462 + ABIE40_RS29875 0.23 +0.8
667,462 + ABIE40_RS29875 0.23 -0.6
667,585 - ABIE40_RS29875 0.32 -0.9
667,585 - ABIE40_RS29875 0.32 +1.2
667,585 - ABIE40_RS29875 0.32 -2.5
667,608 + ABIE40_RS29875 0.34 +0.1
667,671 + ABIE40_RS29875 0.39 -1.9
667,722 + ABIE40_RS29875 0.43 -0.9
667,722 + ABIE40_RS29875 0.43 -1.6
667,723 - ABIE40_RS29875 0.43 +1.1
667,823 - ABIE40_RS29875 0.51 +1.0
667,823 - ABIE40_RS29875 0.51 -2.2
667,823 - ABIE40_RS29875 0.51 -2.5
667,823 - ABIE40_RS29875 0.51 +0.2
667,878 + ABIE40_RS29875 0.55 -0.2
667,932 + ABIE40_RS29875 0.59 +0.5
667,933 - ABIE40_RS29875 0.60 -1.8
667,933 - ABIE40_RS29875 0.60 -0.5
668,022 + ABIE40_RS29875 0.67 -0.7
668,022 + ABIE40_RS29875 0.67 -1.0
668,023 - ABIE40_RS29875 0.67 -1.1
668,023 - ABIE40_RS29875 0.67 -0.9
668,025 + ABIE40_RS29875 0.67 -0.6
668,026 - ABIE40_RS29875 0.67 -1.3
668,049 + ABIE40_RS29875 0.69 +0.1
668,190 + ABIE40_RS29875 0.80 -0.1
668,190 + ABIE40_RS29875 0.80 +1.2
668,191 - ABIE40_RS29875 0.80 -2.7
668,191 - ABIE40_RS29875 0.80 +0.5
668,399 + +0.1
668,399 + -1.4
668,400 - -1.5
668,400 - -0.5
668,493 + -0.2
668,493 + +1.1
668,564 + -0.7
668,667 + ABIE40_RS29880 0.20 +2.1
668,668 - ABIE40_RS29880 0.20 -2.0
668,681 - ABIE40_RS29880 0.21 +0.7
668,746 - ABIE40_RS29880 0.28 +0.8
668,746 - ABIE40_RS29880 0.28 +2.1
668,778 - ABIE40_RS29880 0.31 -0.1
668,855 + ABIE40_RS29880 0.39 +0.5
668,856 - ABIE40_RS29880 0.39 +0.3
668,856 - ABIE40_RS29880 0.39 -0.2
668,879 - ABIE40_RS29880 0.41 -0.1
668,940 - ABIE40_RS29880 0.48 -0.5
668,958 - ABIE40_RS29880 0.49 -1.3
668,958 - ABIE40_RS29880 0.49 -1.1
668,958 - ABIE40_RS29880 0.49 -1.6
668,999 + ABIE40_RS29880 0.54 -1.2
668,999 + ABIE40_RS29880 0.54 -0.2
668,999 + ABIE40_RS29880 0.54 +1.4
669,000 - ABIE40_RS29880 0.54 -1.7
669,000 - ABIE40_RS29880 0.54 -0.7
669,000 - ABIE40_RS29880 0.54 -2.6
669,000 - ABIE40_RS29880 0.54 -2.3
669,000 - ABIE40_RS29880 0.54 +0.2
669,002 - ABIE40_RS29880 0.54 -1.0
669,002 - ABIE40_RS29880 0.54 -2.4
669,002 - ABIE40_RS29880 0.54 -1.2
669,009 - ABIE40_RS29880 0.55 +0.4
669,033 - ABIE40_RS29880 0.57 -0.2
669,081 - ABIE40_RS29880 0.62 +0.5
669,089 + ABIE40_RS29880 0.63 -2.0
669,091 + ABIE40_RS29880 0.63 -0.2
669,151 + ABIE40_RS29880 0.69 +3.1
669,302 + ABIE40_RS29880 0.85 -0.9
669,302 + ABIE40_RS29880 0.85 -1.1
669,302 + ABIE40_RS29880 0.85 +0.1
669,303 - ABIE40_RS29880 0.85 +1.1
669,303 - ABIE40_RS29880 0.85 +0.4
669,371 + -1.6
669,372 - +0.6

Or see this region's nucleotide sequence