Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20190 and ABIE40_RS20195 overlap by 8 nucleotides ABIE40_RS20195 and ABIE40_RS20200 are separated by 16 nucleotides ABIE40_RS20200 and ABIE40_RS20205 are separated by 62 nucleotides
ABIE40_RS20190: ABIE40_RS20190 - ABC transporter permease, at 139,347 to 140,261
_RS20190
ABIE40_RS20195: ABIE40_RS20195 - ABC transporter permease, at 140,254 to 141,054
_RS20195
ABIE40_RS20200: ABIE40_RS20200 - extracellular solute-binding protein, at 141,071 to 142,105
_RS20200
ABIE40_RS20205: ABIE40_RS20205 - histone deacetylase family protein, at 142,168 to 143,199
_RS20205
Position (kb) 141
142
143 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 140.073 kb on + strand, within ABIE40_RS20190 at 140.073 kb on + strand, within ABIE40_RS20190 at 140.073 kb on + strand, within ABIE40_RS20190 at 140.073 kb on + strand, within ABIE40_RS20190 at 140.074 kb on - strand, within ABIE40_RS20190 at 140.074 kb on - strand, within ABIE40_RS20190 at 140.074 kb on - strand, within ABIE40_RS20190 at 140.153 kb on + strand, within ABIE40_RS20190 at 140.220 kb on + strand at 140.220 kb on + strand at 140.221 kb on - strand at 140.260 kb on - strand at 140.326 kb on + strand at 140.354 kb on - strand, within ABIE40_RS20195 at 140.563 kb on + strand, within ABIE40_RS20195 at 140.563 kb on + strand, within ABIE40_RS20195 at 140.563 kb on + strand, within ABIE40_RS20195 at 140.563 kb on + strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.564 kb on - strand, within ABIE40_RS20195 at 140.656 kb on + strand, within ABIE40_RS20195 at 140.671 kb on + strand, within ABIE40_RS20195 at 140.671 kb on + strand, within ABIE40_RS20195 at 140.671 kb on + strand, within ABIE40_RS20195 at 140.688 kb on + strand, within ABIE40_RS20195 at 140.688 kb on + strand, within ABIE40_RS20195 at 140.713 kb on + strand, within ABIE40_RS20195 at 140.713 kb on + strand, within ABIE40_RS20195 at 140.714 kb on - strand, within ABIE40_RS20195 at 140.780 kb on - strand, within ABIE40_RS20195 at 140.807 kb on - strand, within ABIE40_RS20195 at 140.809 kb on - strand, within ABIE40_RS20195 at 140.932 kb on + strand, within ABIE40_RS20195 at 140.932 kb on + strand, within ABIE40_RS20195 at 140.933 kb on - strand, within ABIE40_RS20195 at 140.961 kb on + strand, within ABIE40_RS20195 at 141.053 kb on - strand at 141.074 kb on - strand at 141.158 kb on + strand at 141.159 kb on - strand at 141.159 kb on - strand at 141.159 kb on - strand at 141.159 kb on - strand at 141.159 kb on - strand at 141.173 kb on + strand at 141.173 kb on + strand at 141.174 kb on - strand at 141.174 kb on - strand at 141.174 kb on - strand at 141.175 kb on + strand, within ABIE40_RS20200 at 141.175 kb on + strand, within ABIE40_RS20200 at 141.176 kb on - strand, within ABIE40_RS20200 at 141.212 kb on + strand, within ABIE40_RS20200 at 141.212 kb on + strand, within ABIE40_RS20200 at 141.212 kb on + strand, within ABIE40_RS20200 at 141.213 kb on - strand, within ABIE40_RS20200 at 141.213 kb on - strand, within ABIE40_RS20200 at 141.213 kb on - strand, within ABIE40_RS20200 at 141.213 kb on - strand, within ABIE40_RS20200 at 141.240 kb on - strand, within ABIE40_RS20200 at 141.317 kb on + strand, within ABIE40_RS20200 at 141.317 kb on + strand, within ABIE40_RS20200 at 141.317 kb on + strand, within ABIE40_RS20200 at 141.317 kb on + strand, within ABIE40_RS20200 at 141.318 kb on - strand, within ABIE40_RS20200 at 141.488 kb on + strand, within ABIE40_RS20200 at 141.488 kb on + strand, within ABIE40_RS20200 at 141.488 kb on + strand, within ABIE40_RS20200 at 141.489 kb on - strand, within ABIE40_RS20200 at 141.489 kb on - strand, within ABIE40_RS20200 at 141.489 kb on - strand, within ABIE40_RS20200 at 141.600 kb on - strand, within ABIE40_RS20200 at 141.601 kb on + strand, within ABIE40_RS20200 at 141.602 kb on - strand, within ABIE40_RS20200 at 141.655 kb on + strand, within ABIE40_RS20200 at 141.655 kb on + strand, within ABIE40_RS20200 at 141.696 kb on - strand, within ABIE40_RS20200 at 142.009 kb on - strand at 142.074 kb on - strand at 142.103 kb on + strand at 142.103 kb on + strand at 142.103 kb on + strand at 142.104 kb on - strand at 142.104 kb on - strand at 142.366 kb on + strand, within ABIE40_RS20205 at 142.366 kb on + strand, within ABIE40_RS20205 at 142.366 kb on + strand, within ABIE40_RS20205 at 142.501 kb on + strand, within ABIE40_RS20205 at 142.504 kb on + strand, within ABIE40_RS20205 at 142.504 kb on + strand, within ABIE40_RS20205 at 142.504 kb on + strand, within ABIE40_RS20205 at 142.504 kb on + strand, within ABIE40_RS20205 at 142.505 kb on - strand, within ABIE40_RS20205 at 142.505 kb on - strand, within ABIE40_RS20205 at 142.672 kb on + strand, within ABIE40_RS20205 at 142.673 kb on - strand, within ABIE40_RS20205 at 142.673 kb on - strand, within ABIE40_RS20205 at 142.678 kb on + strand, within ABIE40_RS20205 at 142.678 kb on + strand, within ABIE40_RS20205 at 142.679 kb on - strand, within ABIE40_RS20205 at 142.679 kb on - strand, within ABIE40_RS20205 at 142.679 kb on - strand, within ABIE40_RS20205 at 142.757 kb on - strand, within ABIE40_RS20205 at 142.790 kb on - strand, within ABIE40_RS20205 at 142.790 kb on - strand, within ABIE40_RS20205 at 142.790 kb on - strand, within ABIE40_RS20205 at 142.812 kb on - strand, within ABIE40_RS20205 at 142.843 kb on + strand, within ABIE40_RS20205 at 142.844 kb on - strand, within ABIE40_RS20205 at 142.850 kb on - strand, within ABIE40_RS20205 at 142.850 kb on - strand, within ABIE40_RS20205 at 142.910 kb on - strand, within ABIE40_RS20205 at 142.910 kb on - strand, within ABIE40_RS20205 at 142.910 kb on - strand, within ABIE40_RS20205 at 142.910 kb on - strand, within ABIE40_RS20205 at 142.983 kb on + strand, within ABIE40_RS20205 at 142.984 kb on + strand, within ABIE40_RS20205 at 142.984 kb on + strand, within ABIE40_RS20205 at 142.984 kb on + strand, within ABIE40_RS20205 at 142.985 kb on - strand, within ABIE40_RS20205 at 142.985 kb on - strand, within ABIE40_RS20205 at 142.985 kb on - strand, within ABIE40_RS20205 at 142.985 kb on - strand, within ABIE40_RS20205 at 142.986 kb on + strand, within ABIE40_RS20205 at 142.986 kb on + strand, within ABIE40_RS20205 at 142.986 kb on + strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205 at 142.987 kb on - strand, within ABIE40_RS20205
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 140,073 + ABIE40_RS20190 0.79 +1.2 140,073 + ABIE40_RS20190 0.79 -2.2 140,073 + ABIE40_RS20190 0.79 +0.6 140,073 + ABIE40_RS20190 0.79 -2.6 140,074 - ABIE40_RS20190 0.79 +0.2 140,074 - ABIE40_RS20190 0.79 -0.1 140,074 - ABIE40_RS20190 0.79 +1.3 140,153 + ABIE40_RS20190 0.88 -0.7 140,220 + -0.6 140,220 + +1.9 140,221 - -0.9 140,260 - -1.2 140,326 + -0.7 140,354 - ABIE40_RS20195 0.12 +0.8 140,563 + ABIE40_RS20195 0.39 -0.7 140,563 + ABIE40_RS20195 0.39 +1.9 140,563 + ABIE40_RS20195 0.39 -4.2 140,563 + ABIE40_RS20195 0.39 -0.4 140,564 - ABIE40_RS20195 0.39 +0.9 140,564 - ABIE40_RS20195 0.39 +0.2 140,564 - ABIE40_RS20195 0.39 -1.1 140,564 - ABIE40_RS20195 0.39 -0.6 140,564 - ABIE40_RS20195 0.39 -1.1 140,564 - ABIE40_RS20195 0.39 -1.9 140,564 - ABIE40_RS20195 0.39 +0.8 140,564 - ABIE40_RS20195 0.39 +1.6 140,564 - ABIE40_RS20195 0.39 +0.5 140,564 - ABIE40_RS20195 0.39 -0.7 140,656 + ABIE40_RS20195 0.50 -1.0 140,671 + ABIE40_RS20195 0.52 -1.0 140,671 + ABIE40_RS20195 0.52 -2.8 140,671 + ABIE40_RS20195 0.52 -2.0 140,688 + ABIE40_RS20195 0.54 +0.9 140,688 + ABIE40_RS20195 0.54 +0.3 140,713 + ABIE40_RS20195 0.57 -2.0 140,713 + ABIE40_RS20195 0.57 -1.7 140,714 - ABIE40_RS20195 0.57 -2.5 140,780 - ABIE40_RS20195 0.66 -0.6 140,807 - ABIE40_RS20195 0.69 -0.4 140,809 - ABIE40_RS20195 0.69 +1.9 140,932 + ABIE40_RS20195 0.85 -0.9 140,932 + ABIE40_RS20195 0.85 +0.5 140,933 - ABIE40_RS20195 0.85 -0.6 140,961 + ABIE40_RS20195 0.88 -0.2 141,053 - +0.9 141,074 - -0.4 141,158 + -0.1 141,159 - -2.3 141,159 - -0.4 141,159 - -1.7 141,159 - -2.3 141,159 - +0.3 141,173 + +0.3 141,173 + +0.7 141,174 - +1.9 141,174 - -1.1 141,174 - -0.9 141,175 + ABIE40_RS20200 0.10 +0.6 141,175 + ABIE40_RS20200 0.10 -2.3 141,176 - ABIE40_RS20200 0.10 -2.8 141,212 + ABIE40_RS20200 0.14 +1.9 141,212 + ABIE40_RS20200 0.14 -1.3 141,212 + ABIE40_RS20200 0.14 -2.8 141,213 - ABIE40_RS20200 0.14 +0.3 141,213 - ABIE40_RS20200 0.14 +0.9 141,213 - ABIE40_RS20200 0.14 +0.4 141,213 - ABIE40_RS20200 0.14 +0.7 141,240 - ABIE40_RS20200 0.16 -1.0 141,317 + ABIE40_RS20200 0.24 +0.9 141,317 + ABIE40_RS20200 0.24 -0.9 141,317 + ABIE40_RS20200 0.24 +1.0 141,317 + ABIE40_RS20200 0.24 +0.0 141,318 - ABIE40_RS20200 0.24 -0.9 141,488 + ABIE40_RS20200 0.40 -1.3 141,488 + ABIE40_RS20200 0.40 +0.7 141,488 + ABIE40_RS20200 0.40 +0.3 141,489 - ABIE40_RS20200 0.40 -0.7 141,489 - ABIE40_RS20200 0.40 -2.0 141,489 - ABIE40_RS20200 0.40 -0.9 141,600 - ABIE40_RS20200 0.51 -1.4 141,601 + ABIE40_RS20200 0.51 -0.6 141,602 - ABIE40_RS20200 0.51 -1.5 141,655 + ABIE40_RS20200 0.56 -0.6 141,655 + ABIE40_RS20200 0.56 +0.6 141,696 - ABIE40_RS20200 0.60 -0.5 142,009 - -1.1 142,074 - -0.3 142,103 + +0.2 142,103 + -2.6 142,103 + +0.4 142,104 - +0.3 142,104 - +0.9 142,366 + ABIE40_RS20205 0.19 -0.1 142,366 + ABIE40_RS20205 0.19 -0.6 142,366 + ABIE40_RS20205 0.19 +0.6 142,501 + ABIE40_RS20205 0.32 -2.3 142,504 + ABIE40_RS20205 0.33 -0.6 142,504 + ABIE40_RS20205 0.33 -0.5 142,504 + ABIE40_RS20205 0.33 +1.2 142,504 + ABIE40_RS20205 0.33 +0.9 142,505 - ABIE40_RS20205 0.33 +1.2 142,505 - ABIE40_RS20205 0.33 -0.7 142,672 + ABIE40_RS20205 0.49 -0.5 142,673 - ABIE40_RS20205 0.49 +0.7 142,673 - ABIE40_RS20205 0.49 +0.8 142,678 + ABIE40_RS20205 0.49 +0.4 142,678 + ABIE40_RS20205 0.49 +0.1 142,679 - ABIE40_RS20205 0.50 +0.9 142,679 - ABIE40_RS20205 0.50 +0.3 142,679 - ABIE40_RS20205 0.50 -0.1 142,757 - ABIE40_RS20205 0.57 -0.1 142,790 - ABIE40_RS20205 0.60 +0.7 142,790 - ABIE40_RS20205 0.60 +0.2 142,790 - ABIE40_RS20205 0.60 +0.7 142,812 - ABIE40_RS20205 0.62 +0.8 142,843 + ABIE40_RS20205 0.65 -2.0 142,844 - ABIE40_RS20205 0.66 -1.4 142,850 - ABIE40_RS20205 0.66 +0.4 142,850 - ABIE40_RS20205 0.66 -0.0 142,910 - ABIE40_RS20205 0.72 -0.3 142,910 - ABIE40_RS20205 0.72 -0.6 142,910 - ABIE40_RS20205 0.72 +0.8 142,910 - ABIE40_RS20205 0.72 -1.4 142,983 + ABIE40_RS20205 0.79 -0.6 142,984 + ABIE40_RS20205 0.79 -0.3 142,984 + ABIE40_RS20205 0.79 -2.3 142,984 + ABIE40_RS20205 0.79 -0.8 142,985 - ABIE40_RS20205 0.79 -0.7 142,985 - ABIE40_RS20205 0.79 -1.9 142,985 - ABIE40_RS20205 0.79 -0.8 142,985 - ABIE40_RS20205 0.79 -0.4 142,986 + ABIE40_RS20205 0.79 -0.4 142,986 + ABIE40_RS20205 0.79 -0.2 142,986 + ABIE40_RS20205 0.79 +0.0 142,987 - ABIE40_RS20205 0.79 -0.4 142,987 - ABIE40_RS20205 0.79 +0.1 142,987 - ABIE40_RS20205 0.79 -0.1 142,987 - ABIE40_RS20205 0.79 -0.1 142,987 - ABIE40_RS20205 0.79 +1.5 142,987 - ABIE40_RS20205 0.79 -0.9 142,987 - ABIE40_RS20205 0.79 +0.7 142,987 - ABIE40_RS20205 0.79 -2.7 142,987 - ABIE40_RS20205 0.79 +0.0
Or see this region's nucleotide sequence