Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19670

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19665 and ABIE40_RS19670 overlap by 4 nucleotidesABIE40_RS19670 and ABIE40_RS19675 overlap by 20 nucleotidesABIE40_RS19675 and ABIE40_RS19680 are separated by 46 nucleotides ABIE40_RS19665: ABIE40_RS19665 - branched-chain amino acid ABC transporter permease, at 27,969 to 28,973 _RS19665 ABIE40_RS19670: ABIE40_RS19670 - ABC transporter ATP-binding protein, at 28,970 to 29,734 _RS19670 ABIE40_RS19675: ABIE40_RS19675 - ABC transporter ATP-binding protein, at 29,715 to 30,431 _RS19675 ABIE40_RS19680: ABIE40_RS19680 - SDR family oxidoreductase, at 30,478 to 31,245 _RS19680 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.077 kb on + strand, within ABIE40_RS19665at 28.078 kb on - strand, within ABIE40_RS19665at 28.078 kb on - strand, within ABIE40_RS19665at 28.243 kb on - strand, within ABIE40_RS19665at 28.480 kb on + strand, within ABIE40_RS19665at 28.480 kb on + strand, within ABIE40_RS19665at 28.481 kb on - strand, within ABIE40_RS19665at 28.481 kb on - strand, within ABIE40_RS19665at 28.497 kb on + strand, within ABIE40_RS19665at 28.497 kb on + strand, within ABIE40_RS19665at 28.498 kb on - strand, within ABIE40_RS19665at 28.498 kb on - strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.651 kb on - strand, within ABIE40_RS19665at 28.651 kb on - strand, within ABIE40_RS19665at 28.820 kb on + strand, within ABIE40_RS19665at 28.820 kb on + strand, within ABIE40_RS19665at 28.821 kb on - strand, within ABIE40_RS19665at 28.821 kb on - strand, within ABIE40_RS19665at 28.821 kb on - strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.923 kb on + strandat 28.923 kb on + strandat 28.924 kb on - strandat 28.924 kb on - strandat 28.924 kb on - strandat 28.981 kb on - strandat 29.107 kb on - strand, within ABIE40_RS19670at 29.173 kb on - strand, within ABIE40_RS19670at 29.369 kb on - strand, within ABIE40_RS19670at 29.696 kb on + strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.887 kb on - strand, within ABIE40_RS19675at 29.887 kb on - strand, within ABIE40_RS19675at 29.964 kb on + strand, within ABIE40_RS19675at 29.964 kb on + strand, within ABIE40_RS19675at 29.968 kb on + strand, within ABIE40_RS19675at 29.969 kb on - strand, within ABIE40_RS19675at 29.969 kb on - strand, within ABIE40_RS19675at 30.063 kb on + strand, within ABIE40_RS19675at 30.063 kb on + strand, within ABIE40_RS19675at 30.063 kb on + strand, within ABIE40_RS19675at 30.063 kb on + strand, within ABIE40_RS19675at 30.063 kb on + strand, within ABIE40_RS19675at 30.206 kb on - strand, within ABIE40_RS19675at 30.206 kb on - strand, within ABIE40_RS19675at 30.547 kb on + strandat 30.680 kb on + strand, within ABIE40_RS19680at 30.680 kb on + strand, within ABIE40_RS19680at 30.715 kb on + strand, within ABIE40_RS19680at 30.718 kb on - strand, within ABIE40_RS19680at 30.718 kb on - strand, within ABIE40_RS19680at 30.718 kb on - strand, within ABIE40_RS19680

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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28,077 + ABIE40_RS19665 0.11 +0.2
28,078 - ABIE40_RS19665 0.11 -1.3
28,078 - ABIE40_RS19665 0.11 -2.9
28,243 - ABIE40_RS19665 0.27 -1.7
28,480 + ABIE40_RS19665 0.51 -0.5
28,480 + ABIE40_RS19665 0.51 -1.8
28,481 - ABIE40_RS19665 0.51 -0.8
28,481 - ABIE40_RS19665 0.51 -0.4
28,497 + ABIE40_RS19665 0.53 +2.9
28,497 + ABIE40_RS19665 0.53 -1.6
28,498 - ABIE40_RS19665 0.53 -0.9
28,498 - ABIE40_RS19665 0.53 -1.0
28,650 + ABIE40_RS19665 0.68 -1.8
28,650 + ABIE40_RS19665 0.68 -0.7
28,650 + ABIE40_RS19665 0.68 -0.4
28,650 + ABIE40_RS19665 0.68 -0.2
28,651 - ABIE40_RS19665 0.68 -2.2
28,651 - ABIE40_RS19665 0.68 -2.0
28,820 + ABIE40_RS19665 0.85 +1.9
28,820 + ABIE40_RS19665 0.85 -0.4
28,821 - ABIE40_RS19665 0.85 +0.3
28,821 - ABIE40_RS19665 0.85 +0.9
28,821 - ABIE40_RS19665 0.85 +2.9
28,836 + ABIE40_RS19665 0.86 +0.5
28,836 + ABIE40_RS19665 0.86 +1.1
28,836 + ABIE40_RS19665 0.86 -0.9
28,836 + ABIE40_RS19665 0.86 +0.1
28,836 + ABIE40_RS19665 0.86 -0.8
28,836 + ABIE40_RS19665 0.86 +1.6
28,836 + ABIE40_RS19665 0.86 -3.1
28,836 + ABIE40_RS19665 0.86 -0.1
28,836 + ABIE40_RS19665 0.86 +1.2
28,837 - ABIE40_RS19665 0.86 +1.1
28,837 - ABIE40_RS19665 0.86 -1.3
28,837 - ABIE40_RS19665 0.86 -2.1
28,837 - ABIE40_RS19665 0.86 +0.9
28,837 - ABIE40_RS19665 0.86 -1.8
28,837 - ABIE40_RS19665 0.86 -1.1
28,837 - ABIE40_RS19665 0.86 -1.1
28,923 + -0.1
28,923 + -1.9
28,924 - -0.5
28,924 - +0.5
28,924 - -0.1
28,981 - -0.9
29,107 - ABIE40_RS19670 0.18 -0.2
29,173 - ABIE40_RS19670 0.27 -2.2
29,369 - ABIE40_RS19670 0.52 -0.7
29,696 + +0.2
29,708 + -1.2
29,708 + -0.8
29,708 + +1.1
29,708 + -1.2
29,709 - -0.2
29,709 - -0.5
29,709 - -0.1
29,709 - +1.4
29,709 - -1.5
29,709 - +0.0
29,709 - +0.7
29,887 - ABIE40_RS19675 0.24 +2.7
29,887 - ABIE40_RS19675 0.24 +0.1
29,964 + ABIE40_RS19675 0.35 +0.1
29,964 + ABIE40_RS19675 0.35 +0.9
29,968 + ABIE40_RS19675 0.35 -0.4
29,969 - ABIE40_RS19675 0.35 +0.8
29,969 - ABIE40_RS19675 0.35 +0.3
30,063 + ABIE40_RS19675 0.49 -0.3
30,063 + ABIE40_RS19675 0.49 +0.4
30,063 + ABIE40_RS19675 0.49 -1.6
30,063 + ABIE40_RS19675 0.49 -0.6
30,063 + ABIE40_RS19675 0.49 +0.3
30,206 - ABIE40_RS19675 0.68 -0.9
30,206 - ABIE40_RS19675 0.68 +0.9
30,547 + -0.0
30,680 + ABIE40_RS19680 0.26 -0.3
30,680 + ABIE40_RS19680 0.26 +0.3
30,715 + ABIE40_RS19680 0.31 -1.0
30,718 - ABIE40_RS19680 0.31 -2.3
30,718 - ABIE40_RS19680 0.31 -0.3
30,718 - ABIE40_RS19680 0.31 +1.5

Or see this region's nucleotide sequence