Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08830

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS08825 and ABIE40_RS08830 are separated by 26 nucleotidesABIE40_RS08830 and ABIE40_RS08835 are separated by 158 nucleotides ABIE40_RS08825: ABIE40_RS08825 - FAD-dependent monooxygenase, at 1,700,924 to 1,702,057 _RS08825 ABIE40_RS08830: ABIE40_RS08830 - zinc-finger domain-containing protein, at 1,702,084 to 1,702,329 _RS08830 ABIE40_RS08835: ABIE40_RS08835 - alpha/beta fold hydrolase, at 1,702,488 to 1,703,267 _RS08835 Position (kb) 1702 1703Strain fitness (log2 ratio) -2 -1 0 1 2at 1702.158 kb on - strand, within ABIE40_RS08830at 1702.172 kb on + strand, within ABIE40_RS08830at 1702.172 kb on + strand, within ABIE40_RS08830at 1702.173 kb on - strand, within ABIE40_RS08830at 1702.173 kb on - strand, within ABIE40_RS08830at 1702.216 kb on - strand, within ABIE40_RS08830at 1702.390 kb on - strandat 1702.452 kb on + strandat 1702.452 kb on + strandat 1702.453 kb on - strandat 1702.457 kb on + strandat 1702.458 kb on - strandat 1702.487 kb on + strandat 1702.500 kb on - strandat 1702.729 kb on - strand, within ABIE40_RS08835at 1702.807 kb on - strand, within ABIE40_RS08835at 1702.807 kb on - strand, within ABIE40_RS08835at 1703.184 kb on - strand, within ABIE40_RS08835at 1703.250 kb on + strandat 1703.251 kb on - strandat 1703.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,702,158 - ABIE40_RS08830 0.30 -2.7
1,702,172 + ABIE40_RS08830 0.36 -0.5
1,702,172 + ABIE40_RS08830 0.36 +1.9
1,702,173 - ABIE40_RS08830 0.36 -0.7
1,702,173 - ABIE40_RS08830 0.36 -0.5
1,702,216 - ABIE40_RS08830 0.54 -1.0
1,702,390 - +0.3
1,702,452 + +0.5
1,702,452 + -0.2
1,702,453 - -0.1
1,702,457 + -2.3
1,702,458 - +0.2
1,702,487 + -0.1
1,702,500 - -1.7
1,702,729 - ABIE40_RS08835 0.31 +1.3
1,702,807 - ABIE40_RS08835 0.41 -0.4
1,702,807 - ABIE40_RS08835 0.41 -2.3
1,703,184 - ABIE40_RS08835 0.89 -1.3
1,703,250 + +0.9
1,703,251 - -0.4
1,703,314 - -0.7

Or see this region's nucleotide sequence