Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25465

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25460 and ABIE40_RS25465 are separated by 92 nucleotidesABIE40_RS25465 and ABIE40_RS25470 overlap by 4 nucleotidesABIE40_RS25470 and ABIE40_RS25475 overlap by 8 nucleotides ABIE40_RS25460: ABIE40_RS25460 - ABC transporter substrate-binding protein, at 1,265,215 to 1,266,804 _RS25460 ABIE40_RS25465: ABIE40_RS25465 - ABC transporter permease, at 1,266,897 to 1,267,904 _RS25465 ABIE40_RS25470: ABIE40_RS25470 - ABC transporter permease, at 1,267,901 to 1,268,728 _RS25470 ABIE40_RS25475: ABIE40_RS25475 - ABC transporter ATP-binding protein, at 1,268,721 to 1,270,352 _RS25475 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1265.920 kb on + strand, within ABIE40_RS25460at 1265.998 kb on + strand, within ABIE40_RS25460at 1265.998 kb on + strand, within ABIE40_RS25460at 1265.998 kb on - strand, within ABIE40_RS25460at 1265.999 kb on - strand, within ABIE40_RS25460at 1265.999 kb on - strand, within ABIE40_RS25460at 1265.999 kb on - strand, within ABIE40_RS25460at 1265.999 kb on - strand, within ABIE40_RS25460at 1265.999 kb on - strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.000 kb on + strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.001 kb on - strand, within ABIE40_RS25460at 1266.085 kb on + strand, within ABIE40_RS25460at 1266.085 kb on + strand, within ABIE40_RS25460at 1266.085 kb on + strand, within ABIE40_RS25460at 1266.086 kb on - strand, within ABIE40_RS25460at 1266.086 kb on - strand, within ABIE40_RS25460at 1266.151 kb on + strand, within ABIE40_RS25460at 1266.151 kb on + strand, within ABIE40_RS25460at 1266.152 kb on - strand, within ABIE40_RS25460at 1266.231 kb on + strand, within ABIE40_RS25460at 1266.231 kb on + strand, within ABIE40_RS25460at 1266.231 kb on + strand, within ABIE40_RS25460at 1266.232 kb on - strand, within ABIE40_RS25460at 1266.232 kb on - strand, within ABIE40_RS25460at 1266.232 kb on - strand, within ABIE40_RS25460at 1266.235 kb on + strand, within ABIE40_RS25460at 1266.235 kb on + strand, within ABIE40_RS25460at 1266.235 kb on + strand, within ABIE40_RS25460at 1266.236 kb on - strand, within ABIE40_RS25460at 1266.236 kb on - strand, within ABIE40_RS25460at 1266.236 kb on - strand, within ABIE40_RS25460at 1266.236 kb on - strand, within ABIE40_RS25460at 1266.236 kb on - strand, within ABIE40_RS25460at 1266.271 kb on + strand, within ABIE40_RS25460at 1266.271 kb on + strand, within ABIE40_RS25460at 1266.272 kb on - strand, within ABIE40_RS25460at 1266.298 kb on + strand, within ABIE40_RS25460at 1266.299 kb on - strand, within ABIE40_RS25460at 1266.299 kb on - strand, within ABIE40_RS25460at 1266.299 kb on - strand, within ABIE40_RS25460at 1266.487 kb on + strand, within ABIE40_RS25460at 1266.487 kb on + strand, within ABIE40_RS25460at 1266.520 kb on + strand, within ABIE40_RS25460at 1266.520 kb on + strand, within ABIE40_RS25460at 1266.520 kb on + strand, within ABIE40_RS25460at 1266.520 kb on + strand, within ABIE40_RS25460at 1266.520 kb on + strand, within ABIE40_RS25460at 1266.521 kb on - strand, within ABIE40_RS25460at 1266.521 kb on - strand, within ABIE40_RS25460at 1266.521 kb on - strand, within ABIE40_RS25460at 1266.532 kb on + strand, within ABIE40_RS25460at 1266.533 kb on - strand, within ABIE40_RS25460at 1266.533 kb on - strand, within ABIE40_RS25460at 1266.533 kb on - strand, within ABIE40_RS25460at 1266.640 kb on + strand, within ABIE40_RS25460at 1266.640 kb on + strand, within ABIE40_RS25460at 1266.640 kb on + strand, within ABIE40_RS25460at 1266.640 kb on + strand, within ABIE40_RS25460at 1266.640 kb on + strand, within ABIE40_RS25460at 1266.641 kb on - strand, within ABIE40_RS25460at 1266.641 kb on - strand, within ABIE40_RS25460at 1266.641 kb on - strand, within ABIE40_RS25460at 1266.641 kb on - strand, within ABIE40_RS25460at 1266.641 kb on - strand, within ABIE40_RS25460at 1266.641 kb on - strand, within ABIE40_RS25460at 1266.736 kb on + strandat 1266.736 kb on + strandat 1266.737 kb on - strandat 1266.737 kb on - strandat 1266.737 kb on - strandat 1266.737 kb on - strandat 1266.737 kb on - strandat 1266.772 kb on + strandat 1266.773 kb on - strandat 1266.773 kb on - strandat 1266.773 kb on - strandat 1267.068 kb on + strand, within ABIE40_RS25465at 1267.068 kb on + strand, within ABIE40_RS25465at 1267.069 kb on - strand, within ABIE40_RS25465at 1267.069 kb on - strand, within ABIE40_RS25465at 1267.069 kb on - strand, within ABIE40_RS25465at 1267.402 kb on - strand, within ABIE40_RS25465at 1267.461 kb on + strand, within ABIE40_RS25465at 1267.461 kb on + strand, within ABIE40_RS25465at 1267.461 kb on + strand, within ABIE40_RS25465at 1267.590 kb on + strand, within ABIE40_RS25465at 1267.590 kb on + strand, within ABIE40_RS25465at 1267.591 kb on - strand, within ABIE40_RS25465at 1267.591 kb on - strand, within ABIE40_RS25465at 1267.591 kb on - strand, within ABIE40_RS25465at 1267.591 kb on - strand, within ABIE40_RS25465at 1267.592 kb on + strand, within ABIE40_RS25465at 1267.592 kb on + strand, within ABIE40_RS25465at 1267.592 kb on + strand, within ABIE40_RS25465at 1267.593 kb on - strand, within ABIE40_RS25465at 1267.593 kb on - strand, within ABIE40_RS25465at 1267.702 kb on - strand, within ABIE40_RS25465at 1267.744 kb on - strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.761 kb on + strand, within ABIE40_RS25465at 1267.762 kb on - strand, within ABIE40_RS25465at 1267.762 kb on - strand, within ABIE40_RS25465at 1267.833 kb on + strandat 1267.834 kb on - strandat 1267.834 kb on - strandat 1267.834 kb on - strandat 1267.834 kb on - strandat 1267.834 kb on - strandat 1267.916 kb on - strandat 1267.916 kb on - strandat 1268.049 kb on - strand, within ABIE40_RS25470at 1268.099 kb on + strand, within ABIE40_RS25470at 1268.099 kb on + strand, within ABIE40_RS25470at 1268.099 kb on + strand, within ABIE40_RS25470at 1268.099 kb on + strand, within ABIE40_RS25470at 1268.100 kb on - strand, within ABIE40_RS25470at 1268.293 kb on + strand, within ABIE40_RS25470at 1268.293 kb on + strand, within ABIE40_RS25470

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,265,920 + ABIE40_RS25460 0.44 -1.4
1,265,998 + ABIE40_RS25460 0.49 +0.3
1,265,998 + ABIE40_RS25460 0.49 +3.7
1,265,998 - ABIE40_RS25460 0.49 -1.9
1,265,999 - ABIE40_RS25460 0.49 -1.5
1,265,999 - ABIE40_RS25460 0.49 +0.6
1,265,999 - ABIE40_RS25460 0.49 -0.6
1,265,999 - ABIE40_RS25460 0.49 +0.3
1,265,999 - ABIE40_RS25460 0.49 +0.6
1,266,000 + ABIE40_RS25460 0.49 -0.6
1,266,000 + ABIE40_RS25460 0.49 +0.9
1,266,000 + ABIE40_RS25460 0.49 +1.9
1,266,000 + ABIE40_RS25460 0.49 -0.5
1,266,000 + ABIE40_RS25460 0.49 -1.5
1,266,000 + ABIE40_RS25460 0.49 +0.8
1,266,000 + ABIE40_RS25460 0.49 +1.1
1,266,001 - ABIE40_RS25460 0.49 +0.5
1,266,001 - ABIE40_RS25460 0.49 -0.5
1,266,001 - ABIE40_RS25460 0.49 -1.8
1,266,001 - ABIE40_RS25460 0.49 -2.2
1,266,001 - ABIE40_RS25460 0.49 -2.4
1,266,001 - ABIE40_RS25460 0.49 -1.1
1,266,001 - ABIE40_RS25460 0.49 +0.4
1,266,085 + ABIE40_RS25460 0.55 -2.8
1,266,085 + ABIE40_RS25460 0.55 -1.9
1,266,085 + ABIE40_RS25460 0.55 -0.8
1,266,086 - ABIE40_RS25460 0.55 -0.4
1,266,086 - ABIE40_RS25460 0.55 +1.9
1,266,151 + ABIE40_RS25460 0.59 -0.5
1,266,151 + ABIE40_RS25460 0.59 -2.1
1,266,152 - ABIE40_RS25460 0.59 +1.1
1,266,231 + ABIE40_RS25460 0.64 -0.6
1,266,231 + ABIE40_RS25460 0.64 -0.9
1,266,231 + ABIE40_RS25460 0.64 +0.4
1,266,232 - ABIE40_RS25460 0.64 -0.8
1,266,232 - ABIE40_RS25460 0.64 -0.9
1,266,232 - ABIE40_RS25460 0.64 +0.3
1,266,235 + ABIE40_RS25460 0.64 +0.9
1,266,235 + ABIE40_RS25460 0.64 +3.4
1,266,235 + ABIE40_RS25460 0.64 +0.8
1,266,236 - ABIE40_RS25460 0.64 -0.1
1,266,236 - ABIE40_RS25460 0.64 -0.7
1,266,236 - ABIE40_RS25460 0.64 -0.9
1,266,236 - ABIE40_RS25460 0.64 +0.5
1,266,236 - ABIE40_RS25460 0.64 -0.4
1,266,271 + ABIE40_RS25460 0.66 +0.1
1,266,271 + ABIE40_RS25460 0.66 +0.2
1,266,272 - ABIE40_RS25460 0.66 +0.2
1,266,298 + ABIE40_RS25460 0.68 -0.4
1,266,299 - ABIE40_RS25460 0.68 +0.7
1,266,299 - ABIE40_RS25460 0.68 +0.1
1,266,299 - ABIE40_RS25460 0.68 -1.5
1,266,487 + ABIE40_RS25460 0.80 -0.3
1,266,487 + ABIE40_RS25460 0.80 +0.4
1,266,520 + ABIE40_RS25460 0.82 +0.9
1,266,520 + ABIE40_RS25460 0.82 -0.8
1,266,520 + ABIE40_RS25460 0.82 +0.6
1,266,520 + ABIE40_RS25460 0.82 +0.2
1,266,520 + ABIE40_RS25460 0.82 -0.4
1,266,521 - ABIE40_RS25460 0.82 +0.5
1,266,521 - ABIE40_RS25460 0.82 +0.8
1,266,521 - ABIE40_RS25460 0.82 -0.8
1,266,532 + ABIE40_RS25460 0.83 -0.7
1,266,533 - ABIE40_RS25460 0.83 +0.9
1,266,533 - ABIE40_RS25460 0.83 -1.6
1,266,533 - ABIE40_RS25460 0.83 -0.1
1,266,640 + ABIE40_RS25460 0.90 +0.5
1,266,640 + ABIE40_RS25460 0.90 +0.2
1,266,640 + ABIE40_RS25460 0.90 +0.5
1,266,640 + ABIE40_RS25460 0.90 +1.1
1,266,640 + ABIE40_RS25460 0.90 +0.2
1,266,641 - ABIE40_RS25460 0.90 -0.5
1,266,641 - ABIE40_RS25460 0.90 -1.0
1,266,641 - ABIE40_RS25460 0.90 +1.1
1,266,641 - ABIE40_RS25460 0.90 +0.3
1,266,641 - ABIE40_RS25460 0.90 +0.9
1,266,641 - ABIE40_RS25460 0.90 -0.1
1,266,736 + -1.7
1,266,736 + -1.2
1,266,737 - +0.4
1,266,737 - -1.1
1,266,737 - +0.4
1,266,737 - +0.2
1,266,737 - +1.4
1,266,772 + -0.3
1,266,773 - -0.1
1,266,773 - -1.5
1,266,773 - +0.6
1,267,068 + ABIE40_RS25465 0.17 +0.9
1,267,068 + ABIE40_RS25465 0.17 +0.9
1,267,069 - ABIE40_RS25465 0.17 +0.1
1,267,069 - ABIE40_RS25465 0.17 +0.2
1,267,069 - ABIE40_RS25465 0.17 -0.6
1,267,402 - ABIE40_RS25465 0.50 +1.2
1,267,461 + ABIE40_RS25465 0.56 -0.0
1,267,461 + ABIE40_RS25465 0.56 +0.9
1,267,461 + ABIE40_RS25465 0.56 -2.2
1,267,590 + ABIE40_RS25465 0.69 -1.0
1,267,590 + ABIE40_RS25465 0.69 -2.0
1,267,591 - ABIE40_RS25465 0.69 -0.2
1,267,591 - ABIE40_RS25465 0.69 +0.9
1,267,591 - ABIE40_RS25465 0.69 -0.5
1,267,591 - ABIE40_RS25465 0.69 -0.2
1,267,592 + ABIE40_RS25465 0.69 -1.6
1,267,592 + ABIE40_RS25465 0.69 -0.0
1,267,592 + ABIE40_RS25465 0.69 +0.4
1,267,593 - ABIE40_RS25465 0.69 +1.0
1,267,593 - ABIE40_RS25465 0.69 +3.9
1,267,702 - ABIE40_RS25465 0.80 +0.7
1,267,744 - ABIE40_RS25465 0.84 -0.5
1,267,761 + ABIE40_RS25465 0.86 -0.6
1,267,761 + ABIE40_RS25465 0.86 -0.2
1,267,761 + ABIE40_RS25465 0.86 -1.6
1,267,761 + ABIE40_RS25465 0.86 -0.4
1,267,761 + ABIE40_RS25465 0.86 -0.6
1,267,761 + ABIE40_RS25465 0.86 +1.2
1,267,761 + ABIE40_RS25465 0.86 +0.9
1,267,762 - ABIE40_RS25465 0.86 -0.5
1,267,762 - ABIE40_RS25465 0.86 -1.1
1,267,833 + -0.6
1,267,834 - +1.2
1,267,834 - -0.4
1,267,834 - -1.5
1,267,834 - +0.9
1,267,834 - +0.4
1,267,916 - -0.4
1,267,916 - +1.3
1,268,049 - ABIE40_RS25470 0.18 +1.9
1,268,099 + ABIE40_RS25470 0.24 +0.2
1,268,099 + ABIE40_RS25470 0.24 -0.1
1,268,099 + ABIE40_RS25470 0.24 +0.6
1,268,099 + ABIE40_RS25470 0.24 +3.4
1,268,100 - ABIE40_RS25470 0.24 +2.4
1,268,293 + ABIE40_RS25470 0.47 +0.3
1,268,293 + ABIE40_RS25470 0.47 -1.2

Or see this region's nucleotide sequence