Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21815

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21805 and ABIE40_RS21810 are separated by 0 nucleotidesABIE40_RS21810 and ABIE40_RS21815 are separated by 3 nucleotidesABIE40_RS21815 and ABIE40_RS21820 overlap by 8 nucleotidesABIE40_RS21820 and ABIE40_RS21825 are separated by 104 nucleotides ABIE40_RS21805: ABIE40_RS21805 - hypothetical protein, at 487,747 to 487,980 _RS21805 ABIE40_RS21810: ABIE40_RS21810 - Crp/Fnr family transcriptional regulator, at 487,981 to 488,697 _RS21810 ABIE40_RS21815: ABIE40_RS21815 - metallophosphoesterase, at 488,701 to 489,423 _RS21815 ABIE40_RS21820: ABIE40_RS21820 - nucleotidyltransferase family protein, at 489,416 to 490,195 _RS21820 ABIE40_RS21825: ABIE40_RS21825 - hypothetical protein, at 490,300 to 490,506 _RS21825 Position (kb) 488 489 490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 487.729 kb on + strandat 487.730 kb on - strandat 487.730 kb on - strandat 487.791 kb on + strand, within ABIE40_RS21805at 487.792 kb on - strand, within ABIE40_RS21805at 487.846 kb on + strand, within ABIE40_RS21805at 487.846 kb on + strand, within ABIE40_RS21805at 487.846 kb on + strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.853 kb on - strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.906 kb on + strand, within ABIE40_RS21805at 488.033 kb on + strandat 488.034 kb on - strandat 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.125 kb on - strand, within ABIE40_RS21810at 488.262 kb on + strand, within ABIE40_RS21810at 488.262 kb on + strand, within ABIE40_RS21810at 488.380 kb on + strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.388 kb on - strand, within ABIE40_RS21810at 488.388 kb on - strand, within ABIE40_RS21810at 488.409 kb on + strand, within ABIE40_RS21810at 488.409 kb on + strand, within ABIE40_RS21810at 488.410 kb on - strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.549 kb on + strand, within ABIE40_RS21810at 488.549 kb on + strand, within ABIE40_RS21810at 488.550 kb on - strand, within ABIE40_RS21810at 488.550 kb on - strand, within ABIE40_RS21810at 488.602 kb on + strand, within ABIE40_RS21810at 488.602 kb on + strand, within ABIE40_RS21810at 488.603 kb on - strand, within ABIE40_RS21810at 488.720 kb on + strandat 488.720 kb on + strandat 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.886 kb on - strand, within ABIE40_RS21815at 488.886 kb on - strand, within ABIE40_RS21815at 488.930 kb on + strand, within ABIE40_RS21815at 488.931 kb on - strand, within ABIE40_RS21815at 488.931 kb on - strand, within ABIE40_RS21815at 488.931 kb on - strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.348 kb on - strand, within ABIE40_RS21815at 489.408 kb on + strandat 489.494 kb on + strand, within ABIE40_RS21820at 489.495 kb on - strand, within ABIE40_RS21820at 489.516 kb on + strand, within ABIE40_RS21820at 489.517 kb on - strand, within ABIE40_RS21820at 489.517 kb on - strand, within ABIE40_RS21820at 489.517 kb on - strand, within ABIE40_RS21820at 489.687 kb on + strand, within ABIE40_RS21820at 489.687 kb on + strand, within ABIE40_RS21820at 489.687 kb on + strand, within ABIE40_RS21820at 489.688 kb on - strand, within ABIE40_RS21820at 489.760 kb on - strand, within ABIE40_RS21820at 489.794 kb on + strand, within ABIE40_RS21820at 489.795 kb on - strand, within ABIE40_RS21820at 489.795 kb on - strand, within ABIE40_RS21820at 489.795 kb on - strand, within ABIE40_RS21820at 489.795 kb on - strand, within ABIE40_RS21820at 489.795 kb on - strand, within ABIE40_RS21820at 489.795 kb on - strand, within ABIE40_RS21820at 489.975 kb on + strand, within ABIE40_RS21820at 489.975 kb on + strand, within ABIE40_RS21820at 489.976 kb on - strand, within ABIE40_RS21820at 490.003 kb on + strand, within ABIE40_RS21820at 490.068 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.083 kb on + strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820at 490.084 kb on - strand, within ABIE40_RS21820

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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487,729 + -0.1
487,730 - -0.8
487,730 - -2.1
487,791 + ABIE40_RS21805 0.19 +0.5
487,792 - ABIE40_RS21805 0.19 +1.7
487,846 + ABIE40_RS21805 0.42 +2.5
487,846 + ABIE40_RS21805 0.42 -0.3
487,846 + ABIE40_RS21805 0.42 -0.3
487,847 - ABIE40_RS21805 0.43 +0.1
487,847 - ABIE40_RS21805 0.43 -0.6
487,847 - ABIE40_RS21805 0.43 -2.3
487,847 - ABIE40_RS21805 0.43 +1.5
487,853 - ABIE40_RS21805 0.45 +0.9
487,861 + ABIE40_RS21805 0.49 -1.3
487,861 + ABIE40_RS21805 0.49 +1.3
487,861 + ABIE40_RS21805 0.49 +2.0
487,861 + ABIE40_RS21805 0.49 +0.2
487,861 + ABIE40_RS21805 0.49 -2.2
487,861 + ABIE40_RS21805 0.49 -0.1
487,862 - ABIE40_RS21805 0.49 +0.0
487,862 - ABIE40_RS21805 0.49 +0.6
487,862 - ABIE40_RS21805 0.49 -1.1
487,862 - ABIE40_RS21805 0.49 -1.3
487,906 + ABIE40_RS21805 0.68 -0.9
488,033 + +0.5
488,034 - -0.0
488,124 + ABIE40_RS21810 0.20 +0.5
488,124 + ABIE40_RS21810 0.20 -0.3
488,124 + ABIE40_RS21810 0.20 -1.0
488,124 + ABIE40_RS21810 0.20 -0.3
488,124 + ABIE40_RS21810 0.20 -0.2
488,125 - ABIE40_RS21810 0.20 -0.7
488,262 + ABIE40_RS21810 0.39 +1.8
488,262 + ABIE40_RS21810 0.39 -0.2
488,380 + ABIE40_RS21810 0.56 -0.5
488,381 - ABIE40_RS21810 0.56 -1.3
488,381 - ABIE40_RS21810 0.56 -1.1
488,381 - ABIE40_RS21810 0.56 -0.7
488,381 - ABIE40_RS21810 0.56 +0.5
488,388 - ABIE40_RS21810 0.57 +2.2
488,388 - ABIE40_RS21810 0.57 -3.1
488,409 + ABIE40_RS21810 0.60 +0.1
488,409 + ABIE40_RS21810 0.60 +1.8
488,410 - ABIE40_RS21810 0.60 -1.6
488,411 + ABIE40_RS21810 0.60 -0.8
488,411 + ABIE40_RS21810 0.60 -0.2
488,411 + ABIE40_RS21810 0.60 -1.7
488,411 + ABIE40_RS21810 0.60 -0.4
488,411 + ABIE40_RS21810 0.60 +1.2
488,411 + ABIE40_RS21810 0.60 +0.2
488,411 + ABIE40_RS21810 0.60 -0.6
488,411 + ABIE40_RS21810 0.60 +0.8
488,411 + ABIE40_RS21810 0.60 -0.7
488,411 + ABIE40_RS21810 0.60 +1.2
488,411 + ABIE40_RS21810 0.60 +0.1
488,412 - ABIE40_RS21810 0.60 -0.8
488,412 - ABIE40_RS21810 0.60 +1.1
488,412 - ABIE40_RS21810 0.60 +0.8
488,412 - ABIE40_RS21810 0.60 -0.1
488,412 - ABIE40_RS21810 0.60 -1.6
488,412 - ABIE40_RS21810 0.60 -0.3
488,412 - ABIE40_RS21810 0.60 -0.5
488,412 - ABIE40_RS21810 0.60 -3.4
488,412 - ABIE40_RS21810 0.60 -1.2
488,549 + ABIE40_RS21810 0.79 -3.2
488,549 + ABIE40_RS21810 0.79 +1.4
488,550 - ABIE40_RS21810 0.79 +2.8
488,550 - ABIE40_RS21810 0.79 -0.4
488,602 + ABIE40_RS21810 0.87 -2.5
488,602 + ABIE40_RS21810 0.87 -1.9
488,603 - ABIE40_RS21810 0.87 -0.2
488,720 + +0.4
488,720 + +0.2
488,795 + ABIE40_RS21815 0.13 +0.2
488,795 + ABIE40_RS21815 0.13 -1.1
488,795 + ABIE40_RS21815 0.13 -2.1
488,795 + ABIE40_RS21815 0.13 +0.7
488,795 + ABIE40_RS21815 0.13 -0.8
488,795 + ABIE40_RS21815 0.13 -0.7
488,795 + ABIE40_RS21815 0.13 +0.1
488,795 + ABIE40_RS21815 0.13 +0.3
488,796 - ABIE40_RS21815 0.13 -1.2
488,796 - ABIE40_RS21815 0.13 -1.5
488,796 - ABIE40_RS21815 0.13 -0.1
488,796 - ABIE40_RS21815 0.13 -0.5
488,796 - ABIE40_RS21815 0.13 -0.3
488,796 - ABIE40_RS21815 0.13 -2.3
488,796 - ABIE40_RS21815 0.13 +0.1
488,796 - ABIE40_RS21815 0.13 -1.4
488,796 - ABIE40_RS21815 0.13 +1.0
488,886 - ABIE40_RS21815 0.26 -1.0
488,886 - ABIE40_RS21815 0.26 -1.9
488,930 + ABIE40_RS21815 0.32 +0.4
488,931 - ABIE40_RS21815 0.32 -0.6
488,931 - ABIE40_RS21815 0.32 +0.1
488,931 - ABIE40_RS21815 0.32 +2.0
489,325 + ABIE40_RS21815 0.86 -4.5
489,325 + ABIE40_RS21815 0.86 -0.7
489,325 + ABIE40_RS21815 0.86 -0.5
489,325 + ABIE40_RS21815 0.86 -0.3
489,348 - ABIE40_RS21815 0.89 -0.9
489,408 + -2.8
489,494 + ABIE40_RS21820 0.10 -1.0
489,495 - ABIE40_RS21820 0.10 +0.2
489,516 + ABIE40_RS21820 0.13 -1.7
489,517 - ABIE40_RS21820 0.13 +0.0
489,517 - ABIE40_RS21820 0.13 -0.0
489,517 - ABIE40_RS21820 0.13 -1.0
489,687 + ABIE40_RS21820 0.35 +1.8
489,687 + ABIE40_RS21820 0.35 -0.8
489,687 + ABIE40_RS21820 0.35 +1.5
489,688 - ABIE40_RS21820 0.35 -0.2
489,760 - ABIE40_RS21820 0.44 +0.4
489,794 + ABIE40_RS21820 0.48 +1.1
489,795 - ABIE40_RS21820 0.49 -2.7
489,795 - ABIE40_RS21820 0.49 -1.0
489,795 - ABIE40_RS21820 0.49 -1.2
489,795 - ABIE40_RS21820 0.49 -2.1
489,795 - ABIE40_RS21820 0.49 -0.2
489,795 - ABIE40_RS21820 0.49 +0.8
489,975 + ABIE40_RS21820 0.72 -3.2
489,975 + ABIE40_RS21820 0.72 -0.8
489,976 - ABIE40_RS21820 0.72 -0.9
490,003 + ABIE40_RS21820 0.75 -0.4
490,068 + ABIE40_RS21820 0.84 +0.0
490,083 + ABIE40_RS21820 0.86 +0.3
490,083 + ABIE40_RS21820 0.86 +0.8
490,083 + ABIE40_RS21820 0.86 +1.5
490,083 + ABIE40_RS21820 0.86 -0.9
490,083 + ABIE40_RS21820 0.86 -0.3
490,083 + ABIE40_RS21820 0.86 -0.1
490,083 + ABIE40_RS21820 0.86 +0.0
490,083 + ABIE40_RS21820 0.86 +0.4
490,083 + ABIE40_RS21820 0.86 -1.4
490,083 + ABIE40_RS21820 0.86 +0.3
490,083 + ABIE40_RS21820 0.86 +0.3
490,084 - ABIE40_RS21820 0.86 -0.7
490,084 - ABIE40_RS21820 0.86 +1.1
490,084 - ABIE40_RS21820 0.86 -1.8
490,084 - ABIE40_RS21820 0.86 +1.0
490,084 - ABIE40_RS21820 0.86 +1.3
490,084 - ABIE40_RS21820 0.86 -1.4
490,084 - ABIE40_RS21820 0.86 -2.6
490,084 - ABIE40_RS21820 0.86 +0.4

Or see this region's nucleotide sequence