Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS07050

Experiment: R2A with 1-octen-3-ol 1.3568235 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS07035 and ABIE40_RS07040 are separated by 8 nucleotidesABIE40_RS07040 and ABIE40_RS07045 are separated by 12 nucleotidesABIE40_RS07045 and ABIE40_RS07050 are separated by 151 nucleotidesABIE40_RS07050 and ABIE40_RS07055 are separated by 291 nucleotides ABIE40_RS07035: ABIE40_RS07035 - LysE family transporter, at 1,375,356 to 1,375,973 _RS07035 ABIE40_RS07040: ABIE40_RS07040 - cupin domain-containing protein, at 1,375,982 to 1,376,326 _RS07040 ABIE40_RS07045: ABIE40_RS07045 - MarR family winged helix-turn-helix transcriptional regulator, at 1,376,339 to 1,376,800 _RS07045 ABIE40_RS07050: ABIE40_RS07050 - SDR family oxidoreductase, at 1,376,952 to 1,377,749 _RS07050 ABIE40_RS07055: ABIE40_RS07055 - phosphate ABC transporter substrate-binding protein PstS, at 1,378,041 to 1,379,063 _RS07055 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1375.971 kb on + strandat 1375.972 kb on - strandat 1375.981 kb on + strandat 1376.111 kb on + strand, within ABIE40_RS07040at 1376.156 kb on + strand, within ABIE40_RS07040at 1376.172 kb on - strand, within ABIE40_RS07040at 1376.309 kb on + strandat 1376.712 kb on + strand, within ABIE40_RS07045at 1376.712 kb on + strand, within ABIE40_RS07045at 1376.712 kb on + strand, within ABIE40_RS07045at 1376.712 kb on + strand, within ABIE40_RS07045at 1376.713 kb on - strand, within ABIE40_RS07045at 1376.779 kb on - strandat 1376.779 kb on - strandat 1376.786 kb on + strandat 1376.787 kb on - strandat 1376.787 kb on - strandat 1376.947 kb on + strandat 1376.947 kb on + strandat 1376.947 kb on + strandat 1377.015 kb on + strandat 1377.015 kb on + strandat 1377.016 kb on - strandat 1377.016 kb on - strandat 1377.016 kb on - strandat 1377.016 kb on - strandat 1377.042 kb on + strand, within ABIE40_RS07050at 1377.042 kb on + strand, within ABIE40_RS07050at 1377.042 kb on + strand, within ABIE40_RS07050at 1377.043 kb on - strand, within ABIE40_RS07050at 1377.268 kb on - strand, within ABIE40_RS07050at 1377.357 kb on - strand, within ABIE40_RS07050at 1377.357 kb on - strand, within ABIE40_RS07050at 1377.357 kb on - strand, within ABIE40_RS07050at 1377.410 kb on + strand, within ABIE40_RS07050at 1377.410 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.414 kb on + strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.415 kb on - strand, within ABIE40_RS07050at 1377.636 kb on - strand, within ABIE40_RS07050at 1377.716 kb on + strandat 1377.717 kb on - strandat 1377.747 kb on + strandat 1377.755 kb on - strandat 1377.826 kb on - strandat 1377.923 kb on + strandat 1377.923 kb on + strandat 1377.923 kb on + strandat 1377.923 kb on + strandat 1377.924 kb on - strandat 1377.924 kb on - strandat 1377.924 kb on - strandat 1377.924 kb on - strandat 1377.924 kb on - strandat 1377.982 kb on + strandat 1378.039 kb on + strandat 1378.039 kb on + strandat 1378.039 kb on + strandat 1378.039 kb on + strandat 1378.040 kb on - strandat 1378.040 kb on - strandat 1378.040 kb on - strandat 1378.040 kb on - strandat 1378.040 kb on - strandat 1378.040 kb on - strandat 1378.040 kb on - strandat 1378.125 kb on - strandat 1378.149 kb on + strand, within ABIE40_RS07055at 1378.150 kb on - strand, within ABIE40_RS07055at 1378.179 kb on + strand, within ABIE40_RS07055at 1378.179 kb on + strand, within ABIE40_RS07055at 1378.180 kb on - strand, within ABIE40_RS07055at 1378.180 kb on - strand, within ABIE40_RS07055at 1378.180 kb on - strand, within ABIE40_RS07055at 1378.209 kb on + strand, within ABIE40_RS07055at 1378.209 kb on - strand, within ABIE40_RS07055at 1378.210 kb on - strand, within ABIE40_RS07055at 1378.256 kb on + strand, within ABIE40_RS07055at 1378.257 kb on - strand, within ABIE40_RS07055at 1378.257 kb on - strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.422 kb on + strand, within ABIE40_RS07055at 1378.423 kb on - strand, within ABIE40_RS07055at 1378.659 kb on + strand, within ABIE40_RS07055at 1378.659 kb on + strand, within ABIE40_RS07055at 1378.659 kb on + strand, within ABIE40_RS07055at 1378.659 kb on + strand, within ABIE40_RS07055at 1378.659 kb on + strand, within ABIE40_RS07055at 1378.660 kb on - strand, within ABIE40_RS07055at 1378.660 kb on - strand, within ABIE40_RS07055at 1378.660 kb on - strand, within ABIE40_RS07055at 1378.690 kb on - strand, within ABIE40_RS07055at 1378.698 kb on + strand, within ABIE40_RS07055at 1378.699 kb on - strand, within ABIE40_RS07055at 1378.699 kb on - strand, within ABIE40_RS07055at 1378.699 kb on - strand, within ABIE40_RS07055at 1378.704 kb on + strand, within ABIE40_RS07055at 1378.729 kb on - strand, within ABIE40_RS07055at 1378.729 kb on - strand, within ABIE40_RS07055at 1378.729 kb on - strand, within ABIE40_RS07055

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM
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1,375,971 + +0.2
1,375,972 - -1.4
1,375,981 + -0.5
1,376,111 + ABIE40_RS07040 0.37 -1.4
1,376,156 + ABIE40_RS07040 0.50 +0.6
1,376,172 - ABIE40_RS07040 0.55 -0.7
1,376,309 + -0.8
1,376,712 + ABIE40_RS07045 0.81 -1.3
1,376,712 + ABIE40_RS07045 0.81 -1.3
1,376,712 + ABIE40_RS07045 0.81 -0.1
1,376,712 + ABIE40_RS07045 0.81 -1.5
1,376,713 - ABIE40_RS07045 0.81 -2.1
1,376,779 - +0.4
1,376,779 - -2.2
1,376,786 + +1.9
1,376,787 - -0.4
1,376,787 - -2.6
1,376,947 + +1.3
1,376,947 + +1.3
1,376,947 + +0.2
1,377,015 + -1.2
1,377,015 + -2.4
1,377,016 - +0.6
1,377,016 - +0.4
1,377,016 - +1.3
1,377,016 - -2.0
1,377,042 + ABIE40_RS07050 0.11 -1.0
1,377,042 + ABIE40_RS07050 0.11 +1.1
1,377,042 + ABIE40_RS07050 0.11 +0.1
1,377,043 - ABIE40_RS07050 0.11 -0.5
1,377,268 - ABIE40_RS07050 0.40 -2.2
1,377,357 - ABIE40_RS07050 0.51 +1.1
1,377,357 - ABIE40_RS07050 0.51 +0.6
1,377,357 - ABIE40_RS07050 0.51 -2.8
1,377,410 + ABIE40_RS07050 0.57 +0.4
1,377,410 + ABIE40_RS07050 0.57 -0.0
1,377,414 + ABIE40_RS07050 0.58 -1.7
1,377,414 + ABIE40_RS07050 0.58 -0.9
1,377,414 + ABIE40_RS07050 0.58 -0.1
1,377,414 + ABIE40_RS07050 0.58 +0.1
1,377,414 + ABIE40_RS07050 0.58 -0.2
1,377,414 + ABIE40_RS07050 0.58 +1.4
1,377,414 + ABIE40_RS07050 0.58 +1.9
1,377,414 + ABIE40_RS07050 0.58 +0.2
1,377,414 + ABIE40_RS07050 0.58 +0.2
1,377,415 - ABIE40_RS07050 0.58 -0.1
1,377,415 - ABIE40_RS07050 0.58 -0.2
1,377,415 - ABIE40_RS07050 0.58 -0.8
1,377,415 - ABIE40_RS07050 0.58 +0.4
1,377,415 - ABIE40_RS07050 0.58 -1.0
1,377,415 - ABIE40_RS07050 0.58 +0.6
1,377,415 - ABIE40_RS07050 0.58 +0.3
1,377,415 - ABIE40_RS07050 0.58 +0.3
1,377,636 - ABIE40_RS07050 0.86 -1.1
1,377,716 + -1.5
1,377,717 - -0.6
1,377,747 + +1.9
1,377,755 - -1.1
1,377,826 - +0.5
1,377,923 + -0.7
1,377,923 + +0.1
1,377,923 + +2.4
1,377,923 + +0.6
1,377,924 - +0.1
1,377,924 - +0.1
1,377,924 - -0.3
1,377,924 - +0.0
1,377,924 - +0.7
1,377,982 + -0.2
1,378,039 + -0.3
1,378,039 + +0.7
1,378,039 + +1.2
1,378,039 + -0.2
1,378,040 - -1.6
1,378,040 - +1.2
1,378,040 - +0.6
1,378,040 - -0.4
1,378,040 - -0.4
1,378,040 - +0.4
1,378,040 - -0.3
1,378,125 - +0.8
1,378,149 + ABIE40_RS07055 0.11 +0.8
1,378,150 - ABIE40_RS07055 0.11 +1.1
1,378,179 + ABIE40_RS07055 0.13 +0.3
1,378,179 + ABIE40_RS07055 0.13 -0.0
1,378,180 - ABIE40_RS07055 0.14 -0.4
1,378,180 - ABIE40_RS07055 0.14 +1.2
1,378,180 - ABIE40_RS07055 0.14 -0.2
1,378,209 + ABIE40_RS07055 0.16 -1.6
1,378,209 - ABIE40_RS07055 0.16 +1.3
1,378,210 - ABIE40_RS07055 0.17 +0.5
1,378,256 + ABIE40_RS07055 0.21 -3.6
1,378,257 - ABIE40_RS07055 0.21 -1.0
1,378,257 - ABIE40_RS07055 0.21 +0.3
1,378,422 + ABIE40_RS07055 0.37 +0.7
1,378,422 + ABIE40_RS07055 0.37 -0.3
1,378,422 + ABIE40_RS07055 0.37 +0.3
1,378,422 + ABIE40_RS07055 0.37 -0.7
1,378,422 + ABIE40_RS07055 0.37 -1.8
1,378,422 + ABIE40_RS07055 0.37 +2.0
1,378,422 + ABIE40_RS07055 0.37 +0.6
1,378,423 - ABIE40_RS07055 0.37 +0.4
1,378,659 + ABIE40_RS07055 0.60 +0.6
1,378,659 + ABIE40_RS07055 0.60 -0.0
1,378,659 + ABIE40_RS07055 0.60 +0.1
1,378,659 + ABIE40_RS07055 0.60 +1.3
1,378,659 + ABIE40_RS07055 0.60 +0.6
1,378,660 - ABIE40_RS07055 0.61 -1.5
1,378,660 - ABIE40_RS07055 0.61 -0.6
1,378,660 - ABIE40_RS07055 0.61 -1.6
1,378,690 - ABIE40_RS07055 0.63 -0.0
1,378,698 + ABIE40_RS07055 0.64 -2.0
1,378,699 - ABIE40_RS07055 0.64 -0.4
1,378,699 - ABIE40_RS07055 0.64 +0.5
1,378,699 - ABIE40_RS07055 0.64 -1.5
1,378,704 + ABIE40_RS07055 0.65 +0.4
1,378,729 - ABIE40_RS07055 0.67 -0.1
1,378,729 - ABIE40_RS07055 0.67 +0.2
1,378,729 - ABIE40_RS07055 0.67 -0.4

Or see this region's nucleotide sequence