Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04020 and ABIE40_RS04025 are separated by 220 nucleotides ABIE40_RS04025 and ABIE40_RS04030 are separated by 23 nucleotides
ABIE40_RS04020: ABIE40_RS04020 - polysaccharide deacetylase family protein, at 797,428 to 798,474
_RS04020
ABIE40_RS04025: ABIE40_RS04025 - D-alanyl-D-alanine carboxypeptidase family protein, at 798,695 to 799,978
_RS04025
ABIE40_RS04030: ABIE40_RS04030 - AraC family transcriptional regulator, at 800,002 to 800,982
_RS04030
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 797.764 kb on - strand, within ABIE40_RS04020 at 797.948 kb on + strand, within ABIE40_RS04020 at 797.949 kb on - strand, within ABIE40_RS04020 at 797.953 kb on + strand, within ABIE40_RS04020 at 797.964 kb on + strand, within ABIE40_RS04020 at 798.058 kb on - strand, within ABIE40_RS04020 at 798.058 kb on - strand, within ABIE40_RS04020 at 798.058 kb on - strand, within ABIE40_RS04020 at 798.242 kb on + strand, within ABIE40_RS04020 at 798.333 kb on - strand, within ABIE40_RS04020 at 798.355 kb on - strand, within ABIE40_RS04020 at 798.501 kb on + strand at 798.501 kb on + strand at 798.516 kb on + strand at 798.517 kb on - strand at 798.650 kb on + strand at 798.650 kb on + strand at 798.650 kb on + strand at 798.650 kb on + strand at 798.651 kb on - strand at 798.651 kb on - strand at 798.651 kb on - strand at 798.681 kb on + strand at 798.681 kb on + strand at 798.681 kb on + strand at 798.681 kb on + strand at 798.682 kb on - strand at 798.682 kb on - strand at 798.869 kb on + strand, within ABIE40_RS04025 at 798.869 kb on + strand, within ABIE40_RS04025 at 798.869 kb on + strand, within ABIE40_RS04025 at 798.869 kb on + strand, within ABIE40_RS04025 at 798.869 kb on + strand, within ABIE40_RS04025 at 798.870 kb on - strand, within ABIE40_RS04025 at 798.870 kb on - strand, within ABIE40_RS04025 at 798.935 kb on + strand, within ABIE40_RS04025 at 799.007 kb on + strand, within ABIE40_RS04025 at 799.008 kb on - strand, within ABIE40_RS04025 at 799.139 kb on + strand, within ABIE40_RS04025 at 799.139 kb on + strand, within ABIE40_RS04025 at 799.139 kb on + strand, within ABIE40_RS04025 at 799.140 kb on - strand, within ABIE40_RS04025 at 799.292 kb on - strand, within ABIE40_RS04025 at 799.292 kb on - strand, within ABIE40_RS04025 at 799.304 kb on + strand, within ABIE40_RS04025 at 799.305 kb on - strand, within ABIE40_RS04025 at 799.340 kb on + strand, within ABIE40_RS04025 at 799.342 kb on + strand, within ABIE40_RS04025 at 799.343 kb on - strand, within ABIE40_RS04025 at 799.343 kb on - strand, within ABIE40_RS04025 at 799.343 kb on - strand, within ABIE40_RS04025 at 799.469 kb on + strand, within ABIE40_RS04025 at 799.470 kb on - strand, within ABIE40_RS04025 at 799.470 kb on - strand, within ABIE40_RS04025 at 799.470 kb on - strand, within ABIE40_RS04025 at 799.470 kb on - strand, within ABIE40_RS04025 at 799.646 kb on + strand, within ABIE40_RS04025 at 799.646 kb on + strand, within ABIE40_RS04025 at 799.646 kb on + strand, within ABIE40_RS04025 at 799.646 kb on + strand, within ABIE40_RS04025 at 799.646 kb on + strand, within ABIE40_RS04025 at 799.647 kb on - strand, within ABIE40_RS04025 at 799.648 kb on + strand, within ABIE40_RS04025 at 799.648 kb on + strand, within ABIE40_RS04025 at 799.648 kb on + strand, within ABIE40_RS04025 at 799.946 kb on + strand at 799.998 kb on - strand at 800.034 kb on + strand at 800.035 kb on - strand at 800.082 kb on + strand at 800.082 kb on + strand at 800.082 kb on + strand at 800.082 kb on + strand at 800.082 kb on + strand at 800.083 kb on - strand at 800.084 kb on + strand at 800.085 kb on - strand at 800.085 kb on - strand at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.145 kb on + strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.146 kb on - strand, within ABIE40_RS04030 at 800.147 kb on + strand, within ABIE40_RS04030 at 800.147 kb on + strand, within ABIE40_RS04030 at 800.148 kb on - strand, within ABIE40_RS04030 at 800.234 kb on + strand, within ABIE40_RS04030 at 800.235 kb on - strand, within ABIE40_RS04030 at 800.647 kb on - strand, within ABIE40_RS04030 at 800.648 kb on + strand, within ABIE40_RS04030 at 800.648 kb on + strand, within ABIE40_RS04030 at 800.649 kb on - strand, within ABIE40_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 797,764 - ABIE40_RS04020 0.32 +1.6 797,948 + ABIE40_RS04020 0.50 -2.7 797,949 - ABIE40_RS04020 0.50 -0.3 797,953 + ABIE40_RS04020 0.50 +0.8 797,964 + ABIE40_RS04020 0.51 +0.8 798,058 - ABIE40_RS04020 0.60 +1.6 798,058 - ABIE40_RS04020 0.60 +0.5 798,058 - ABIE40_RS04020 0.60 +0.9 798,242 + ABIE40_RS04020 0.78 -1.8 798,333 - ABIE40_RS04020 0.86 -0.4 798,355 - ABIE40_RS04020 0.89 -0.2 798,501 + +0.7 798,501 + -0.6 798,516 + -1.0 798,517 - +0.4 798,650 + -0.7 798,650 + -1.6 798,650 + -1.4 798,650 + +0.1 798,651 - -0.9 798,651 - -1.7 798,651 - -2.0 798,681 + +2.7 798,681 + +1.0 798,681 + -0.3 798,681 + -0.9 798,682 - -1.7 798,682 - -1.1 798,869 + ABIE40_RS04025 0.14 -0.9 798,869 + ABIE40_RS04025 0.14 -1.1 798,869 + ABIE40_RS04025 0.14 -0.9 798,869 + ABIE40_RS04025 0.14 -1.6 798,869 + ABIE40_RS04025 0.14 -1.6 798,870 - ABIE40_RS04025 0.14 +0.7 798,870 - ABIE40_RS04025 0.14 -0.9 798,935 + ABIE40_RS04025 0.19 +1.0 799,007 + ABIE40_RS04025 0.24 +0.5 799,008 - ABIE40_RS04025 0.24 +0.1 799,139 + ABIE40_RS04025 0.35 -1.6 799,139 + ABIE40_RS04025 0.35 -0.1 799,139 + ABIE40_RS04025 0.35 -0.9 799,140 - ABIE40_RS04025 0.35 -0.5 799,292 - ABIE40_RS04025 0.46 -0.0 799,292 - ABIE40_RS04025 0.46 +0.7 799,304 + ABIE40_RS04025 0.47 -2.0 799,305 - ABIE40_RS04025 0.48 -0.9 799,340 + ABIE40_RS04025 0.50 -0.0 799,342 + ABIE40_RS04025 0.50 -0.2 799,343 - ABIE40_RS04025 0.50 -1.0 799,343 - ABIE40_RS04025 0.50 -2.0 799,343 - ABIE40_RS04025 0.50 -1.9 799,469 + ABIE40_RS04025 0.60 -0.0 799,470 - ABIE40_RS04025 0.60 -0.8 799,470 - ABIE40_RS04025 0.60 -0.3 799,470 - ABIE40_RS04025 0.60 +0.3 799,470 - ABIE40_RS04025 0.60 -3.7 799,646 + ABIE40_RS04025 0.74 +2.7 799,646 + ABIE40_RS04025 0.74 -1.4 799,646 + ABIE40_RS04025 0.74 +0.7 799,646 + ABIE40_RS04025 0.74 -0.6 799,646 + ABIE40_RS04025 0.74 -0.9 799,647 - ABIE40_RS04025 0.74 -0.2 799,648 + ABIE40_RS04025 0.74 -0.9 799,648 + ABIE40_RS04025 0.74 -1.0 799,648 + ABIE40_RS04025 0.74 -0.4 799,946 + -0.5 799,998 - +0.2 800,034 + -1.0 800,035 - +0.9 800,082 + +0.6 800,082 + +2.0 800,082 + -1.3 800,082 + +1.4 800,082 + -0.3 800,083 - +0.5 800,084 + -1.9 800,085 - +0.2 800,085 - -0.2 800,145 + ABIE40_RS04030 0.15 +3.2 800,145 + ABIE40_RS04030 0.15 -0.3 800,145 + ABIE40_RS04030 0.15 -0.9 800,145 + ABIE40_RS04030 0.15 -1.0 800,145 + ABIE40_RS04030 0.15 +0.2 800,145 + ABIE40_RS04030 0.15 -1.1 800,146 - ABIE40_RS04030 0.15 -1.8 800,146 - ABIE40_RS04030 0.15 +0.2 800,146 - ABIE40_RS04030 0.15 +2.3 800,146 - ABIE40_RS04030 0.15 -1.3 800,146 - ABIE40_RS04030 0.15 -0.5 800,146 - ABIE40_RS04030 0.15 +0.7 800,147 + ABIE40_RS04030 0.15 +1.0 800,147 + ABIE40_RS04030 0.15 +0.9 800,148 - ABIE40_RS04030 0.15 +0.5 800,234 + ABIE40_RS04030 0.24 +1.4 800,235 - ABIE40_RS04030 0.24 -0.0 800,647 - ABIE40_RS04030 0.66 +1.3 800,648 + ABIE40_RS04030 0.66 +1.3 800,648 + ABIE40_RS04030 0.66 -1.9 800,649 - ABIE40_RS04030 0.66 +0.3
Or see this region's nucleotide sequence