Experiment: R2A with 1-octen-3-ol 1.3568235 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01430 and ABIE40_RS01435 are separated by 112 nucleotides ABIE40_RS01435 and ABIE40_RS01440 are separated by 0 nucleotides ABIE40_RS01440 and ABIE40_RS01445 overlap by 4 nucleotides ABIE40_RS01445 and ABIE40_RS01450 are separated by 91 nucleotides
ABIE40_RS01430: ABIE40_RS01430 - DMT family transporter, at 279,621 to 280,517
_RS01430
ABIE40_RS01435: ABIE40_RS01435 - Lrp/AsnC family transcriptional regulator, at 280,630 to 281,079
_RS01435
ABIE40_RS01440: ABIE40_RS01440 - GNAT family N-acetyltransferase, at 281,080 to 281,967
_RS01440
ABIE40_RS01445: ABIE40_RS01445 - dUTP diphosphatase, at 281,964 to 282,434
_RS01445
ABIE40_RS01450: ABIE40_RS01450 - peptide chain release factor 3, at 282,526 to 284,109
_RS01450
Position (kb) 281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.185 kb on + strand, within ABIE40_RS01430 at 280.186 kb on - strand, within ABIE40_RS01430 at 280.212 kb on - strand, within ABIE40_RS01430 at 280.212 kb on - strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.216 kb on + strand, within ABIE40_RS01430 at 280.217 kb on - strand, within ABIE40_RS01430 at 280.217 kb on - strand, within ABIE40_RS01430 at 280.217 kb on - strand, within ABIE40_RS01430 at 280.252 kb on + strand, within ABIE40_RS01430 at 280.252 kb on + strand, within ABIE40_RS01430 at 280.311 kb on - strand, within ABIE40_RS01430 at 280.644 kb on + strand at 280.950 kb on + strand, within ABIE40_RS01435 at 281.218 kb on + strand, within ABIE40_RS01440 at 281.218 kb on + strand, within ABIE40_RS01440 at 281.218 kb on + strand, within ABIE40_RS01440 at 281.219 kb on - strand, within ABIE40_RS01440 at 281.353 kb on + strand, within ABIE40_RS01440 at 281.353 kb on + strand, within ABIE40_RS01440 at 281.354 kb on - strand, within ABIE40_RS01440 at 281.354 kb on - strand, within ABIE40_RS01440 at 281.354 kb on - strand, within ABIE40_RS01440 at 281.388 kb on + strand, within ABIE40_RS01440 at 281.388 kb on + strand, within ABIE40_RS01440 at 281.388 kb on + strand, within ABIE40_RS01440 at 281.389 kb on - strand, within ABIE40_RS01440 at 281.389 kb on - strand, within ABIE40_RS01440 at 281.389 kb on - strand, within ABIE40_RS01440 at 281.389 kb on - strand, within ABIE40_RS01440 at 281.570 kb on + strand, within ABIE40_RS01440 at 281.571 kb on - strand, within ABIE40_RS01440 at 281.571 kb on - strand, within ABIE40_RS01440 at 281.580 kb on - strand, within ABIE40_RS01440 at 281.580 kb on - strand, within ABIE40_RS01440 at 281.598 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.600 kb on + strand, within ABIE40_RS01440 at 281.601 kb on - strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.814 kb on + strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.815 kb on - strand, within ABIE40_RS01440 at 281.921 kb on + strand at 281.921 kb on + strand at 281.922 kb on - strand at 281.967 kb on + strand at 281.967 kb on + strand at 281.968 kb on - strand at 281.968 kb on - strand at 281.968 kb on - strand at 281.968 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.444 kb on - strand at 282.495 kb on - strand at 282.499 kb on - strand at 282.499 kb on - strand at 282.499 kb on - strand at 282.576 kb on + strand at 282.576 kb on + strand at 282.577 kb on - strand at 282.758 kb on - strand, within ABIE40_RS01450 at 282.820 kb on + strand, within ABIE40_RS01450 at 282.820 kb on + strand, within ABIE40_RS01450 at 282.820 kb on + strand, within ABIE40_RS01450 at 282.821 kb on - strand, within ABIE40_RS01450
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 1.3568235 mM remove 280,185 + ABIE40_RS01430 0.63 -1.2 280,186 - ABIE40_RS01430 0.63 +0.0 280,212 - ABIE40_RS01430 0.66 +0.1 280,212 - ABIE40_RS01430 0.66 +0.4 280,216 + ABIE40_RS01430 0.66 -0.1 280,216 + ABIE40_RS01430 0.66 -0.6 280,216 + ABIE40_RS01430 0.66 -1.4 280,216 + ABIE40_RS01430 0.66 +0.5 280,216 + ABIE40_RS01430 0.66 +2.5 280,216 + ABIE40_RS01430 0.66 -0.1 280,216 + ABIE40_RS01430 0.66 -1.7 280,217 - ABIE40_RS01430 0.66 +0.1 280,217 - ABIE40_RS01430 0.66 -2.1 280,217 - ABIE40_RS01430 0.66 -0.0 280,252 + ABIE40_RS01430 0.70 +1.0 280,252 + ABIE40_RS01430 0.70 -1.8 280,311 - ABIE40_RS01430 0.77 -0.3 280,644 + -0.5 280,950 + ABIE40_RS01435 0.71 +1.0 281,218 + ABIE40_RS01440 0.16 +0.8 281,218 + ABIE40_RS01440 0.16 +0.8 281,218 + ABIE40_RS01440 0.16 +0.1 281,219 - ABIE40_RS01440 0.16 +1.1 281,353 + ABIE40_RS01440 0.31 -3.1 281,353 + ABIE40_RS01440 0.31 -1.9 281,354 - ABIE40_RS01440 0.31 -0.2 281,354 - ABIE40_RS01440 0.31 -2.0 281,354 - ABIE40_RS01440 0.31 +0.1 281,388 + ABIE40_RS01440 0.35 -0.1 281,388 + ABIE40_RS01440 0.35 +0.3 281,388 + ABIE40_RS01440 0.35 -0.7 281,389 - ABIE40_RS01440 0.35 +1.4 281,389 - ABIE40_RS01440 0.35 +0.0 281,389 - ABIE40_RS01440 0.35 -1.0 281,389 - ABIE40_RS01440 0.35 -1.2 281,570 + ABIE40_RS01440 0.55 -0.5 281,571 - ABIE40_RS01440 0.55 +0.8 281,571 - ABIE40_RS01440 0.55 +0.2 281,580 - ABIE40_RS01440 0.56 -1.1 281,580 - ABIE40_RS01440 0.56 -1.5 281,598 + ABIE40_RS01440 0.58 +1.2 281,600 + ABIE40_RS01440 0.59 +0.0 281,600 + ABIE40_RS01440 0.59 -0.5 281,600 + ABIE40_RS01440 0.59 +0.6 281,600 + ABIE40_RS01440 0.59 -0.1 281,600 + ABIE40_RS01440 0.59 -0.3 281,600 + ABIE40_RS01440 0.59 +0.8 281,601 - ABIE40_RS01440 0.59 -0.2 281,814 + ABIE40_RS01440 0.83 +1.3 281,814 + ABIE40_RS01440 0.83 -0.2 281,814 + ABIE40_RS01440 0.83 -0.2 281,814 + ABIE40_RS01440 0.83 +1.4 281,814 + ABIE40_RS01440 0.83 -3.2 281,814 + ABIE40_RS01440 0.83 +0.7 281,814 + ABIE40_RS01440 0.83 -0.2 281,814 + ABIE40_RS01440 0.83 +0.2 281,815 - ABIE40_RS01440 0.83 -0.1 281,815 - ABIE40_RS01440 0.83 -1.2 281,815 - ABIE40_RS01440 0.83 +0.5 281,815 - ABIE40_RS01440 0.83 -0.4 281,815 - ABIE40_RS01440 0.83 -3.1 281,921 + -2.3 281,921 + +2.3 281,922 - -3.0 281,967 + +0.2 281,967 + +0.0 281,968 - -0.7 281,968 - -0.2 281,968 - -0.5 281,968 - +0.2 282,444 - -0.5 282,444 - +0.1 282,444 - -0.8 282,444 - +0.2 282,444 - -0.5 282,495 - -1.5 282,499 - +0.8 282,499 - -0.5 282,499 - -1.0 282,576 + -1.0 282,576 + -1.0 282,577 - -0.8 282,758 - ABIE40_RS01450 0.15 -1.4 282,820 + ABIE40_RS01450 0.19 -1.3 282,820 + ABIE40_RS01450 0.19 -1.4 282,820 + ABIE40_RS01450 0.19 +0.2 282,821 - ABIE40_RS01450 0.19 -1.8
Or see this region's nucleotide sequence