Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28830 and ABIE40_RS28835 overlap by 1 nucleotides ABIE40_RS28835 and ABIE40_RS28840 overlap by 4 nucleotides ABIE40_RS28840 and ABIE40_RS28845 are separated by 3 nucleotides
ABIE40_RS28830: ABIE40_RS28830 - AAA family ATPase, at 469,780 to 470,322
_RS28830
ABIE40_RS28835: ABIE40_RS28835 - ASCH domain-containing protein, at 470,322 to 470,756
_RS28835
ABIE40_RS28840: ABIE40_RS28840 - hypothetical protein, at 470,753 to 472,087
_RS28840
ABIE40_RS28845: ABIE40_RS28845 - hypothetical protein, at 472,091 to 473,125
_RS28845
Position (kb) 470
471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 469.834 kb on + strand at 469.993 kb on + strand, within ABIE40_RS28830 at 470.040 kb on + strand, within ABIE40_RS28830 at 470.040 kb on + strand, within ABIE40_RS28830 at 470.087 kb on + strand, within ABIE40_RS28830 at 470.148 kb on + strand, within ABIE40_RS28830 at 470.148 kb on + strand, within ABIE40_RS28830 at 470.216 kb on + strand, within ABIE40_RS28830 at 470.217 kb on - strand, within ABIE40_RS28830 at 470.256 kb on + strand, within ABIE40_RS28830 at 470.256 kb on + strand, within ABIE40_RS28830 at 470.256 kb on + strand, within ABIE40_RS28830 at 470.257 kb on - strand, within ABIE40_RS28830 at 470.266 kb on - strand, within ABIE40_RS28830 at 470.328 kb on + strand at 470.416 kb on - strand, within ABIE40_RS28835 at 470.416 kb on - strand, within ABIE40_RS28835 at 470.430 kb on - strand, within ABIE40_RS28835 at 470.491 kb on + strand, within ABIE40_RS28835 at 470.491 kb on + strand, within ABIE40_RS28835 at 470.491 kb on + strand, within ABIE40_RS28835 at 470.491 kb on + strand, within ABIE40_RS28835 at 470.492 kb on - strand, within ABIE40_RS28835 at 470.523 kb on - strand, within ABIE40_RS28835 at 470.523 kb on - strand, within ABIE40_RS28835 at 470.549 kb on + strand, within ABIE40_RS28835 at 470.600 kb on + strand, within ABIE40_RS28835 at 470.601 kb on - strand, within ABIE40_RS28835 at 470.676 kb on - strand, within ABIE40_RS28835 at 470.692 kb on + strand, within ABIE40_RS28835 at 470.693 kb on - strand, within ABIE40_RS28835 at 470.693 kb on - strand, within ABIE40_RS28835 at 470.713 kb on - strand at 470.713 kb on - strand at 470.758 kb on + strand at 470.758 kb on + strand at 470.758 kb on + strand at 470.758 kb on + strand at 470.758 kb on + strand at 470.759 kb on - strand at 470.759 kb on - strand at 470.759 kb on - strand at 470.812 kb on - strand at 470.833 kb on + strand at 470.833 kb on + strand at 470.833 kb on + strand at 470.837 kb on - strand at 470.946 kb on - strand, within ABIE40_RS28840 at 470.968 kb on + strand, within ABIE40_RS28840 at 470.968 kb on + strand, within ABIE40_RS28840 at 470.968 kb on + strand, within ABIE40_RS28840 at 470.969 kb on - strand, within ABIE40_RS28840 at 470.969 kb on - strand, within ABIE40_RS28840 at 471.125 kb on - strand, within ABIE40_RS28840 at 471.125 kb on - strand, within ABIE40_RS28840 at 471.176 kb on - strand, within ABIE40_RS28840 at 471.221 kb on + strand, within ABIE40_RS28840 at 471.221 kb on + strand, within ABIE40_RS28840 at 471.222 kb on - strand, within ABIE40_RS28840 at 471.222 kb on - strand, within ABIE40_RS28840 at 471.262 kb on + strand, within ABIE40_RS28840 at 471.345 kb on + strand, within ABIE40_RS28840 at 471.345 kb on + strand, within ABIE40_RS28840 at 471.345 kb on + strand, within ABIE40_RS28840 at 471.426 kb on - strand, within ABIE40_RS28840 at 471.455 kb on + strand, within ABIE40_RS28840 at 471.456 kb on - strand, within ABIE40_RS28840 at 471.531 kb on + strand, within ABIE40_RS28840 at 471.531 kb on + strand, within ABIE40_RS28840 at 471.532 kb on - strand, within ABIE40_RS28840 at 471.532 kb on - strand, within ABIE40_RS28840 at 471.655 kb on + strand, within ABIE40_RS28840 at 471.673 kb on + strand, within ABIE40_RS28840 at 471.673 kb on + strand, within ABIE40_RS28840 at 471.674 kb on - strand, within ABIE40_RS28840 at 471.793 kb on + strand, within ABIE40_RS28840 at 471.794 kb on - strand, within ABIE40_RS28840 at 471.843 kb on - strand, within ABIE40_RS28840 at 471.881 kb on + strand, within ABIE40_RS28840 at 471.881 kb on + strand, within ABIE40_RS28840 at 471.882 kb on - strand, within ABIE40_RS28840 at 471.882 kb on - strand, within ABIE40_RS28840 at 471.882 kb on - strand, within ABIE40_RS28840 at 471.911 kb on - strand, within ABIE40_RS28840 at 471.970 kb on - strand at 471.970 kb on - strand at 472.048 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.087 kb on + strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.088 kb on - strand at 472.257 kb on - strand, within ABIE40_RS28845 at 472.257 kb on - strand, within ABIE40_RS28845 at 472.257 kb on - strand, within ABIE40_RS28845 at 472.377 kb on + strand, within ABIE40_RS28845 at 472.377 kb on + strand, within ABIE40_RS28845 at 472.378 kb on - strand, within ABIE40_RS28845 at 472.378 kb on - strand, within ABIE40_RS28845 at 472.378 kb on - strand, within ABIE40_RS28845 at 472.384 kb on - strand, within ABIE40_RS28845 at 472.407 kb on - strand, within ABIE40_RS28845 at 472.424 kb on - strand, within ABIE40_RS28845 at 472.477 kb on - strand, within ABIE40_RS28845 at 472.477 kb on - strand, within ABIE40_RS28845 at 472.477 kb on - strand, within ABIE40_RS28845 at 472.525 kb on + strand, within ABIE40_RS28845 at 472.525 kb on + strand, within ABIE40_RS28845 at 472.525 kb on + strand, within ABIE40_RS28845 at 472.526 kb on - strand, within ABIE40_RS28845 at 472.526 kb on - strand, within ABIE40_RS28845 at 472.526 kb on - strand, within ABIE40_RS28845 at 472.565 kb on + strand, within ABIE40_RS28845 at 472.566 kb on - strand, within ABIE40_RS28845 at 472.569 kb on + strand, within ABIE40_RS28845 at 472.569 kb on + strand, within ABIE40_RS28845 at 472.570 kb on - strand, within ABIE40_RS28845 at 472.576 kb on + strand, within ABIE40_RS28845 at 472.576 kb on + strand, within ABIE40_RS28845 at 472.577 kb on - strand, within ABIE40_RS28845 at 472.577 kb on - strand, within ABIE40_RS28845 at 472.632 kb on - strand, within ABIE40_RS28845 at 472.632 kb on - strand, within ABIE40_RS28845 at 472.697 kb on - strand, within ABIE40_RS28845 at 472.726 kb on - strand, within ABIE40_RS28845 at 472.726 kb on - strand, within ABIE40_RS28845 at 472.768 kb on + strand, within ABIE40_RS28845 at 472.769 kb on - strand, within ABIE40_RS28845 at 472.769 kb on - strand, within ABIE40_RS28845 at 472.771 kb on + strand, within ABIE40_RS28845 at 472.797 kb on - strand, within ABIE40_RS28845 at 472.806 kb on + strand, within ABIE40_RS28845 at 472.807 kb on - strand, within ABIE40_RS28845 at 472.807 kb on - strand, within ABIE40_RS28845 at 472.888 kb on + strand, within ABIE40_RS28845 at 472.888 kb on + strand, within ABIE40_RS28845 at 472.888 kb on + strand, within ABIE40_RS28845 at 472.888 kb on + strand, within ABIE40_RS28845 at 472.889 kb on - strand, within ABIE40_RS28845 at 472.889 kb on - strand, within ABIE40_RS28845 at 472.889 kb on - strand, within ABIE40_RS28845 at 472.889 kb on - strand, within ABIE40_RS28845 at 472.889 kb on - strand, within ABIE40_RS28845
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM remove 469,834 + +0.9 469,993 + ABIE40_RS28830 0.39 +2.2 470,040 + ABIE40_RS28830 0.48 +2.2 470,040 + ABIE40_RS28830 0.48 -1.0 470,087 + ABIE40_RS28830 0.57 -0.4 470,148 + ABIE40_RS28830 0.68 -0.1 470,148 + ABIE40_RS28830 0.68 +0.7 470,216 + ABIE40_RS28830 0.80 -0.0 470,217 - ABIE40_RS28830 0.80 +2.5 470,256 + ABIE40_RS28830 0.88 +1.2 470,256 + ABIE40_RS28830 0.88 +1.2 470,256 + ABIE40_RS28830 0.88 -1.3 470,257 - ABIE40_RS28830 0.88 -3.0 470,266 - ABIE40_RS28830 0.90 +0.6 470,328 + -1.3 470,416 - ABIE40_RS28835 0.22 +0.2 470,416 - ABIE40_RS28835 0.22 +0.9 470,430 - ABIE40_RS28835 0.25 +0.3 470,491 + ABIE40_RS28835 0.39 -0.1 470,491 + ABIE40_RS28835 0.39 -1.0 470,491 + ABIE40_RS28835 0.39 -0.6 470,491 + ABIE40_RS28835 0.39 +0.3 470,492 - ABIE40_RS28835 0.39 -0.4 470,523 - ABIE40_RS28835 0.46 +0.9 470,523 - ABIE40_RS28835 0.46 +0.6 470,549 + ABIE40_RS28835 0.52 -0.4 470,600 + ABIE40_RS28835 0.64 -2.7 470,601 - ABIE40_RS28835 0.64 +0.0 470,676 - ABIE40_RS28835 0.81 -0.5 470,692 + ABIE40_RS28835 0.85 -0.1 470,693 - ABIE40_RS28835 0.85 +1.9 470,693 - ABIE40_RS28835 0.85 +0.3 470,713 - +0.9 470,713 - -1.0 470,758 + +0.2 470,758 + -0.1 470,758 + -0.4 470,758 + +2.2 470,758 + -0.4 470,759 - -0.7 470,759 - +1.7 470,759 - -0.8 470,812 - -0.4 470,833 + -1.5 470,833 + -1.2 470,833 + +0.7 470,837 - +3.2 470,946 - ABIE40_RS28840 0.14 -0.6 470,968 + ABIE40_RS28840 0.16 -1.0 470,968 + ABIE40_RS28840 0.16 -0.1 470,968 + ABIE40_RS28840 0.16 -0.1 470,969 - ABIE40_RS28840 0.16 +0.6 470,969 - ABIE40_RS28840 0.16 -1.8 471,125 - ABIE40_RS28840 0.28 +0.0 471,125 - ABIE40_RS28840 0.28 +2.2 471,176 - ABIE40_RS28840 0.32 +1.2 471,221 + ABIE40_RS28840 0.35 +0.2 471,221 + ABIE40_RS28840 0.35 -0.8 471,222 - ABIE40_RS28840 0.35 -0.2 471,222 - ABIE40_RS28840 0.35 +0.8 471,262 + ABIE40_RS28840 0.38 -1.0 471,345 + ABIE40_RS28840 0.44 -0.3 471,345 + ABIE40_RS28840 0.44 -0.2 471,345 + ABIE40_RS28840 0.44 +0.2 471,426 - ABIE40_RS28840 0.50 +2.8 471,455 + ABIE40_RS28840 0.53 +0.6 471,456 - ABIE40_RS28840 0.53 -0.2 471,531 + ABIE40_RS28840 0.58 +0.7 471,531 + ABIE40_RS28840 0.58 -1.5 471,532 - ABIE40_RS28840 0.58 -1.1 471,532 - ABIE40_RS28840 0.58 -0.9 471,655 + ABIE40_RS28840 0.68 -0.9 471,673 + ABIE40_RS28840 0.69 -0.6 471,673 + ABIE40_RS28840 0.69 -0.0 471,674 - ABIE40_RS28840 0.69 +0.3 471,793 + ABIE40_RS28840 0.78 -2.0 471,794 - ABIE40_RS28840 0.78 -0.6 471,843 - ABIE40_RS28840 0.82 +0.3 471,881 + ABIE40_RS28840 0.84 +1.2 471,881 + ABIE40_RS28840 0.84 +0.2 471,882 - ABIE40_RS28840 0.85 -0.5 471,882 - ABIE40_RS28840 0.85 -2.0 471,882 - ABIE40_RS28840 0.85 -1.4 471,911 - ABIE40_RS28840 0.87 +0.6 471,970 - -0.1 471,970 - +0.9 472,048 + -0.6 472,087 + +1.2 472,087 + -1.0 472,087 + +1.2 472,087 + -1.8 472,087 + +1.4 472,087 + +0.8 472,087 + +1.2 472,087 + -0.6 472,088 - -2.9 472,088 - +3.2 472,088 - +1.2 472,088 - -1.7 472,088 - +2.2 472,088 - -0.8 472,088 - +0.2 472,088 - -1.5 472,088 - +0.1 472,088 - -0.8 472,088 - +0.6 472,257 - ABIE40_RS28845 0.16 -0.8 472,257 - ABIE40_RS28845 0.16 -0.4 472,257 - ABIE40_RS28845 0.16 -0.5 472,377 + ABIE40_RS28845 0.28 -1.8 472,377 + ABIE40_RS28845 0.28 +2.2 472,378 - ABIE40_RS28845 0.28 -1.1 472,378 - ABIE40_RS28845 0.28 +1.2 472,378 - ABIE40_RS28845 0.28 -0.1 472,384 - ABIE40_RS28845 0.28 +1.2 472,407 - ABIE40_RS28845 0.31 +1.7 472,424 - ABIE40_RS28845 0.32 -1.0 472,477 - ABIE40_RS28845 0.37 -0.1 472,477 - ABIE40_RS28845 0.37 +0.6 472,477 - ABIE40_RS28845 0.37 -1.1 472,525 + ABIE40_RS28845 0.42 +1.1 472,525 + ABIE40_RS28845 0.42 +0.6 472,525 + ABIE40_RS28845 0.42 -0.1 472,526 - ABIE40_RS28845 0.42 -0.5 472,526 - ABIE40_RS28845 0.42 -2.9 472,526 - ABIE40_RS28845 0.42 +2.5 472,565 + ABIE40_RS28845 0.46 +0.0 472,566 - ABIE40_RS28845 0.46 +0.2 472,569 + ABIE40_RS28845 0.46 +0.5 472,569 + ABIE40_RS28845 0.46 -2.0 472,570 - ABIE40_RS28845 0.46 -1.8 472,576 + ABIE40_RS28845 0.47 +0.6 472,576 + ABIE40_RS28845 0.47 -0.6 472,577 - ABIE40_RS28845 0.47 -0.1 472,577 - ABIE40_RS28845 0.47 -1.3 472,632 - ABIE40_RS28845 0.52 -0.5 472,632 - ABIE40_RS28845 0.52 -0.8 472,697 - ABIE40_RS28845 0.59 -1.9 472,726 - ABIE40_RS28845 0.61 -0.5 472,726 - ABIE40_RS28845 0.61 +0.6 472,768 + ABIE40_RS28845 0.65 -0.5 472,769 - ABIE40_RS28845 0.66 -0.6 472,769 - ABIE40_RS28845 0.66 -1.4 472,771 + ABIE40_RS28845 0.66 -1.3 472,797 - ABIE40_RS28845 0.68 -1.4 472,806 + ABIE40_RS28845 0.69 -2.0 472,807 - ABIE40_RS28845 0.69 -0.4 472,807 - ABIE40_RS28845 0.69 -1.2 472,888 + ABIE40_RS28845 0.77 +0.3 472,888 + ABIE40_RS28845 0.77 -1.1 472,888 + ABIE40_RS28845 0.77 +0.2 472,888 + ABIE40_RS28845 0.77 +1.6 472,889 - ABIE40_RS28845 0.77 -1.2 472,889 - ABIE40_RS28845 0.77 -0.5 472,889 - ABIE40_RS28845 0.77 -0.4 472,889 - ABIE40_RS28845 0.77 -1.7 472,889 - ABIE40_RS28845 0.77 -0.0
Or see this region's nucleotide sequence