Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28135

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS28130 and ABIE40_RS28135 are separated by 129 nucleotidesABIE40_RS28135 and ABIE40_RS28140 are separated by 377 nucleotidesABIE40_RS28140 and ABIE40_RS28145 are separated by 75 nucleotides ABIE40_RS28130: ABIE40_RS28130 - response regulator, at 333,742 to 335,949 _RS28130 ABIE40_RS28135: ABIE40_RS28135 - ATP-binding protein, at 336,079 to 338,175 _RS28135 ABIE40_RS28140: ABIE40_RS28140 - ferritin-like domain-containing protein, at 338,553 to 339,056 _RS28140 ABIE40_RS28145: ABIE40_RS28145 - catalase C, at 339,132 to 341,282 _RS28145 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 335.260 kb on - strand, within ABIE40_RS28130at 335.515 kb on + strand, within ABIE40_RS28130at 335.515 kb on + strand, within ABIE40_RS28130at 335.516 kb on - strand, within ABIE40_RS28130at 335.709 kb on - strand, within ABIE40_RS28130at 335.835 kb on + strandat 335.835 kb on + strandat 335.836 kb on - strandat 335.836 kb on - strandat 335.837 kb on + strandat 335.837 kb on + strandat 335.837 kb on + strandat 335.838 kb on - strandat 335.844 kb on + strandat 335.844 kb on + strandat 335.844 kb on + strandat 335.844 kb on + strandat 335.845 kb on - strandat 335.845 kb on - strandat 335.845 kb on - strandat 335.845 kb on - strandat 335.845 kb on - strandat 335.845 kb on - strandat 335.846 kb on + strandat 335.846 kb on + strandat 335.847 kb on + strandat 335.847 kb on - strandat 335.847 kb on - strandat 335.847 kb on - strandat 335.847 kb on - strandat 335.847 kb on - strandat 335.847 kb on - strandat 335.877 kb on - strandat 336.110 kb on + strandat 336.335 kb on + strand, within ABIE40_RS28135at 336.335 kb on + strand, within ABIE40_RS28135at 336.335 kb on + strand, within ABIE40_RS28135at 336.335 kb on + strand, within ABIE40_RS28135at 336.336 kb on - strand, within ABIE40_RS28135at 336.336 kb on - strand, within ABIE40_RS28135at 336.362 kb on + strand, within ABIE40_RS28135at 336.362 kb on + strand, within ABIE40_RS28135at 336.429 kb on + strand, within ABIE40_RS28135at 336.429 kb on + strand, within ABIE40_RS28135at 336.429 kb on + strand, within ABIE40_RS28135at 336.430 kb on - strand, within ABIE40_RS28135at 336.430 kb on - strand, within ABIE40_RS28135at 336.432 kb on + strand, within ABIE40_RS28135at 336.432 kb on + strand, within ABIE40_RS28135at 336.432 kb on + strand, within ABIE40_RS28135at 336.433 kb on - strand, within ABIE40_RS28135at 336.433 kb on - strand, within ABIE40_RS28135at 336.433 kb on - strand, within ABIE40_RS28135at 336.463 kb on - strand, within ABIE40_RS28135at 336.497 kb on + strand, within ABIE40_RS28135at 336.497 kb on + strand, within ABIE40_RS28135at 336.497 kb on + strand, within ABIE40_RS28135at 336.498 kb on - strand, within ABIE40_RS28135at 336.498 kb on - strand, within ABIE40_RS28135at 336.498 kb on - strand, within ABIE40_RS28135at 336.498 kb on - strand, within ABIE40_RS28135at 336.578 kb on - strand, within ABIE40_RS28135at 336.811 kb on + strand, within ABIE40_RS28135at 336.811 kb on + strand, within ABIE40_RS28135at 336.812 kb on - strand, within ABIE40_RS28135at 336.812 kb on - strand, within ABIE40_RS28135at 336.932 kb on + strand, within ABIE40_RS28135at 336.933 kb on - strand, within ABIE40_RS28135at 336.933 kb on - strand, within ABIE40_RS28135at 337.066 kb on + strand, within ABIE40_RS28135at 337.174 kb on - strand, within ABIE40_RS28135at 337.341 kb on - strand, within ABIE40_RS28135at 337.341 kb on - strand, within ABIE40_RS28135at 337.341 kb on - strand, within ABIE40_RS28135at 337.473 kb on + strand, within ABIE40_RS28135at 337.619 kb on + strand, within ABIE40_RS28135at 337.844 kb on + strand, within ABIE40_RS28135at 337.844 kb on + strand, within ABIE40_RS28135at 337.858 kb on - strand, within ABIE40_RS28135at 337.858 kb on - strand, within ABIE40_RS28135at 337.859 kb on + strand, within ABIE40_RS28135at 337.859 kb on + strand, within ABIE40_RS28135at 338.036 kb on + strandat 338.036 kb on + strandat 338.036 kb on + strandat 338.064 kb on - strandat 338.078 kb on + strandat 338.078 kb on + strandat 338.079 kb on - strandat 338.097 kb on + strandat 338.097 kb on + strandat 338.097 kb on + strandat 338.229 kb on + strandat 338.229 kb on + strandat 338.230 kb on - strandat 338.282 kb on + strandat 338.283 kb on - strandat 338.470 kb on + strandat 338.471 kb on - strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.552 kb on + strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.553 kb on - strandat 338.607 kb on + strand, within ABIE40_RS28140at 338.607 kb on + strand, within ABIE40_RS28140at 338.608 kb on - strand, within ABIE40_RS28140at 338.608 kb on - strand, within ABIE40_RS28140at 338.608 kb on - strand, within ABIE40_RS28140at 338.608 kb on - strand, within ABIE40_RS28140at 338.608 kb on - strand, within ABIE40_RS28140at 338.608 kb on - strand, within ABIE40_RS28140at 338.886 kb on + strand, within ABIE40_RS28140at 338.887 kb on - strand, within ABIE40_RS28140at 338.887 kb on - strand, within ABIE40_RS28140at 339.054 kb on + strandat 339.054 kb on + strandat 339.144 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
remove
335,260 - ABIE40_RS28130 0.69 -0.2
335,515 + ABIE40_RS28130 0.80 -1.0
335,515 + ABIE40_RS28130 0.80 -1.5
335,516 - ABIE40_RS28130 0.80 +0.2
335,709 - ABIE40_RS28130 0.89 -0.4
335,835 + +0.2
335,835 + +1.5
335,836 - -0.1
335,836 - -2.3
335,837 + +0.7
335,837 + +1.0
335,837 + +1.1
335,838 - -1.8
335,844 + -1.5
335,844 + -0.8
335,844 + -0.8
335,844 + +0.2
335,845 - +1.0
335,845 - -1.9
335,845 - +0.2
335,845 - -2.3
335,845 - +1.6
335,845 - +1.0
335,846 + -0.1
335,846 + +0.3
335,847 + +1.2
335,847 - +1.0
335,847 - +0.5
335,847 - -0.7
335,847 - -0.7
335,847 - -1.0
335,847 - +0.1
335,877 - -0.4
336,110 + -0.8
336,335 + ABIE40_RS28135 0.12 +0.3
336,335 + ABIE40_RS28135 0.12 +1.6
336,335 + ABIE40_RS28135 0.12 +0.3
336,335 + ABIE40_RS28135 0.12 -0.5
336,336 - ABIE40_RS28135 0.12 -0.6
336,336 - ABIE40_RS28135 0.12 +2.2
336,362 + ABIE40_RS28135 0.13 +0.3
336,362 + ABIE40_RS28135 0.13 +1.3
336,429 + ABIE40_RS28135 0.17 -0.9
336,429 + ABIE40_RS28135 0.17 -0.2
336,429 + ABIE40_RS28135 0.17 -0.5
336,430 - ABIE40_RS28135 0.17 +0.6
336,430 - ABIE40_RS28135 0.17 +2.2
336,432 + ABIE40_RS28135 0.17 -0.5
336,432 + ABIE40_RS28135 0.17 +0.1
336,432 + ABIE40_RS28135 0.17 +0.4
336,433 - ABIE40_RS28135 0.17 +1.2
336,433 - ABIE40_RS28135 0.17 -0.3
336,433 - ABIE40_RS28135 0.17 -0.6
336,463 - ABIE40_RS28135 0.18 -1.1
336,497 + ABIE40_RS28135 0.20 +1.1
336,497 + ABIE40_RS28135 0.20 +2.2
336,497 + ABIE40_RS28135 0.20 +0.6
336,498 - ABIE40_RS28135 0.20 -0.8
336,498 - ABIE40_RS28135 0.20 -1.6
336,498 - ABIE40_RS28135 0.20 +1.2
336,498 - ABIE40_RS28135 0.20 +0.1
336,578 - ABIE40_RS28135 0.24 +0.7
336,811 + ABIE40_RS28135 0.35 -0.6
336,811 + ABIE40_RS28135 0.35 +0.2
336,812 - ABIE40_RS28135 0.35 -2.0
336,812 - ABIE40_RS28135 0.35 +0.5
336,932 + ABIE40_RS28135 0.41 -0.8
336,933 - ABIE40_RS28135 0.41 -0.1
336,933 - ABIE40_RS28135 0.41 +0.4
337,066 + ABIE40_RS28135 0.47 -1.1
337,174 - ABIE40_RS28135 0.52 +2.8
337,341 - ABIE40_RS28135 0.60 -0.7
337,341 - ABIE40_RS28135 0.60 -0.1
337,341 - ABIE40_RS28135 0.60 +1.2
337,473 + ABIE40_RS28135 0.66 -1.5
337,619 + ABIE40_RS28135 0.73 +0.7
337,844 + ABIE40_RS28135 0.84 +1.5
337,844 + ABIE40_RS28135 0.84 -0.0
337,858 - ABIE40_RS28135 0.85 +1.6
337,858 - ABIE40_RS28135 0.85 +0.3
337,859 + ABIE40_RS28135 0.85 -0.6
337,859 + ABIE40_RS28135 0.85 +0.9
338,036 + -1.7
338,036 + -0.8
338,036 + +1.3
338,064 - -1.4
338,078 + -0.2
338,078 + +0.2
338,079 - -3.2
338,097 + -1.5
338,097 + +3.8
338,097 + +0.2
338,229 + -0.9
338,229 + +1.2
338,230 - -0.6
338,282 + -0.1
338,283 - +0.1
338,470 + +0.3
338,471 - +0.8
338,552 + +0.6
338,552 + +0.6
338,552 + +0.3
338,552 + +1.5
338,552 + +0.1
338,552 + +0.7
338,552 + -0.7
338,552 + -0.5
338,552 + +1.3
338,552 + -0.6
338,553 - -0.5
338,553 - -1.1
338,553 - -0.1
338,553 - +2.6
338,553 - -0.6
338,553 - +2.5
338,553 - +1.0
338,553 - -1.0
338,607 + ABIE40_RS28140 0.11 -0.6
338,607 + ABIE40_RS28140 0.11 +0.6
338,608 - ABIE40_RS28140 0.11 +0.3
338,608 - ABIE40_RS28140 0.11 +1.4
338,608 - ABIE40_RS28140 0.11 -0.0
338,608 - ABIE40_RS28140 0.11 +0.6
338,608 - ABIE40_RS28140 0.11 -2.3
338,608 - ABIE40_RS28140 0.11 +0.4
338,886 + ABIE40_RS28140 0.66 -1.9
338,887 - ABIE40_RS28140 0.66 -2.2
338,887 - ABIE40_RS28140 0.66 +1.0
339,054 + +0.9
339,054 + +0.4
339,144 - +0.2

Or see this region's nucleotide sequence