Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27620 and ABIE40_RS27625 are separated by 40 nucleotides ABIE40_RS27625 and ABIE40_RS27630 are separated by 89 nucleotides ABIE40_RS27630 and ABIE40_RS27635 are separated by 177 nucleotides
ABIE40_RS27620: ABIE40_RS27620 - PAS domain S-box protein, at 233,957 to 236,920
_RS27620
ABIE40_RS27625: ABIE40_RS27625 - PAS domain-containing protein, at 236,961 to 237,359
_RS27625
ABIE40_RS27630: ABIE40_RS27630 - metalloregulator ArsR/SmtB family transcription factor, at 237,449 to 237,784
_RS27630
ABIE40_RS27635: ABIE40_RS27635 - hypothetical protein, at 237,962 to 238,222
_RS27635
Position (kb) 236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 236.299 kb on + strand, within ABIE40_RS27620 at 236.299 kb on + strand, within ABIE40_RS27620 at 236.300 kb on - strand, within ABIE40_RS27620 at 236.382 kb on + strand, within ABIE40_RS27620 at 236.482 kb on + strand, within ABIE40_RS27620 at 236.496 kb on + strand, within ABIE40_RS27620 at 236.624 kb on - strand at 236.844 kb on + strand at 236.845 kb on - strand at 236.881 kb on + strand at 236.881 kb on + strand at 236.882 kb on - strand at 236.893 kb on + strand at 236.894 kb on - strand at 236.998 kb on - strand at 237.014 kb on - strand, within ABIE40_RS27625 at 237.014 kb on - strand, within ABIE40_RS27625 at 237.014 kb on - strand, within ABIE40_RS27625 at 237.073 kb on + strand, within ABIE40_RS27625 at 237.073 kb on + strand, within ABIE40_RS27625 at 237.074 kb on - strand, within ABIE40_RS27625 at 237.074 kb on - strand, within ABIE40_RS27625 at 237.074 kb on - strand, within ABIE40_RS27625 at 237.190 kb on + strand, within ABIE40_RS27625 at 237.191 kb on - strand, within ABIE40_RS27625 at 237.191 kb on - strand, within ABIE40_RS27625 at 237.191 kb on - strand, within ABIE40_RS27625 at 237.231 kb on + strand, within ABIE40_RS27625 at 237.232 kb on - strand, within ABIE40_RS27625 at 237.266 kb on - strand, within ABIE40_RS27625 at 237.279 kb on - strand, within ABIE40_RS27625 at 237.279 kb on - strand, within ABIE40_RS27625 at 237.401 kb on - strand at 237.451 kb on - strand at 237.451 kb on - strand at 237.451 kb on - strand at 237.451 kb on - strand at 237.464 kb on + strand at 237.471 kb on + strand at 237.471 kb on + strand at 237.471 kb on + strand at 237.471 kb on + strand at 237.471 kb on + strand at 237.472 kb on - strand at 237.472 kb on - strand at 237.472 kb on - strand at 237.472 kb on - strand at 237.472 kb on - strand at 237.472 kb on - strand at 237.526 kb on - strand, within ABIE40_RS27630 at 237.597 kb on - strand, within ABIE40_RS27630 at 237.819 kb on + strand at 237.819 kb on + strand at 237.820 kb on - strand at 237.821 kb on + strand at 237.853 kb on - strand at 237.912 kb on - strand at 237.912 kb on - strand at 237.925 kb on + strand at 237.926 kb on - strand at 238.127 kb on + strand, within ABIE40_RS27635 at 238.220 kb on + strand at 238.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM remove 236,299 + ABIE40_RS27620 0.79 -0.5 236,299 + ABIE40_RS27620 0.79 -1.4 236,300 - ABIE40_RS27620 0.79 +1.3 236,382 + ABIE40_RS27620 0.82 -0.1 236,482 + ABIE40_RS27620 0.85 -2.3 236,496 + ABIE40_RS27620 0.86 +0.7 236,624 - +0.5 236,844 + +0.7 236,845 - +0.7 236,881 + +1.3 236,881 + +2.3 236,882 - -0.3 236,893 + -0.3 236,894 - -1.1 236,998 - +0.3 237,014 - ABIE40_RS27625 0.13 +2.3 237,014 - ABIE40_RS27625 0.13 -0.4 237,014 - ABIE40_RS27625 0.13 -2.1 237,073 + ABIE40_RS27625 0.28 -1.8 237,073 + ABIE40_RS27625 0.28 +2.3 237,074 - ABIE40_RS27625 0.28 -0.0 237,074 - ABIE40_RS27625 0.28 +0.7 237,074 - ABIE40_RS27625 0.28 +0.7 237,190 + ABIE40_RS27625 0.57 -1.8 237,191 - ABIE40_RS27625 0.58 -1.8 237,191 - ABIE40_RS27625 0.58 +2.3 237,191 - ABIE40_RS27625 0.58 +0.3 237,231 + ABIE40_RS27625 0.68 -1.1 237,232 - ABIE40_RS27625 0.68 +0.7 237,266 - ABIE40_RS27625 0.76 -0.1 237,279 - ABIE40_RS27625 0.80 -0.7 237,279 - ABIE40_RS27625 0.80 -0.8 237,401 - -1.2 237,451 - -1.1 237,451 - +1.7 237,451 - +0.2 237,451 - +0.5 237,464 + +0.3 237,471 + -0.5 237,471 + +0.3 237,471 + -1.3 237,471 + +0.4 237,471 + +0.8 237,472 - -1.6 237,472 - +3.6 237,472 - +1.7 237,472 - -1.8 237,472 - +0.7 237,472 - -1.1 237,526 - ABIE40_RS27630 0.23 -0.5 237,597 - ABIE40_RS27630 0.44 +1.3 237,819 + -0.3 237,819 + +0.1 237,820 - -1.9 237,821 + +1.7 237,853 - -0.7 237,912 - +2.3 237,912 - -1.3 237,925 + -0.5 237,926 - -0.6 238,127 + ABIE40_RS27635 0.63 +2.1 238,220 + +1.4 238,220 + -0.4
Or see this region's nucleotide sequence