Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22170

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22165 and ABIE40_RS22170 are separated by 58 nucleotidesABIE40_RS22170 and ABIE40_RS22175 are separated by 111 nucleotides ABIE40_RS22165: ABIE40_RS22165 - LysR family transcriptional regulator, at 568,885 to 569,778 _RS22165 ABIE40_RS22170: ABIE40_RS22170 - phosphatase PAP2 family protein, at 569,837 to 570,871 _RS22170 ABIE40_RS22175: ABIE40_RS22175 - hypothetical protein, at 570,983 to 572,182 _RS22175 Position (kb) 569 570 571Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 568.970 kb on + strandat 569.227 kb on + strand, within ABIE40_RS22165at 569.227 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.343 kb on + strand, within ABIE40_RS22165at 569.344 kb on - strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.401 kb on + strand, within ABIE40_RS22165at 569.402 kb on - strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.488 kb on + strand, within ABIE40_RS22165at 569.489 kb on - strand, within ABIE40_RS22165at 569.489 kb on - strand, within ABIE40_RS22165at 569.489 kb on - strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.541 kb on + strand, within ABIE40_RS22165at 569.542 kb on - strand, within ABIE40_RS22165at 569.542 kb on - strand, within ABIE40_RS22165at 569.605 kb on + strand, within ABIE40_RS22165at 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.701 kb on + strandat 569.702 kb on - strandat 569.702 kb on - strandat 569.702 kb on - strandat 569.702 kb on - strandat 569.705 kb on - strandat 569.722 kb on - strandat 569.722 kb on - strandat 569.722 kb on - strandat 569.865 kb on + strandat 569.865 kb on + strandat 569.968 kb on + strand, within ABIE40_RS22170at 569.968 kb on + strand, within ABIE40_RS22170at 569.969 kb on - strand, within ABIE40_RS22170at 569.969 kb on - strand, within ABIE40_RS22170at 569.973 kb on + strand, within ABIE40_RS22170at 569.973 kb on + strand, within ABIE40_RS22170at 569.973 kb on + strand, within ABIE40_RS22170at 569.974 kb on - strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.981 kb on + strand, within ABIE40_RS22170at 569.982 kb on - strand, within ABIE40_RS22170at 569.982 kb on - strand, within ABIE40_RS22170at 569.982 kb on - strand, within ABIE40_RS22170at 570.026 kb on + strand, within ABIE40_RS22170at 570.066 kb on + strand, within ABIE40_RS22170at 570.066 kb on + strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.114 kb on + strand, within ABIE40_RS22170at 570.114 kb on + strand, within ABIE40_RS22170at 570.115 kb on - strand, within ABIE40_RS22170at 570.115 kb on - strand, within ABIE40_RS22170at 570.140 kb on + strand, within ABIE40_RS22170at 570.140 kb on + strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.180 kb on - strand, within ABIE40_RS22170at 570.180 kb on - strand, within ABIE40_RS22170at 570.262 kb on + strand, within ABIE40_RS22170at 570.262 kb on + strand, within ABIE40_RS22170at 570.263 kb on - strand, within ABIE40_RS22170at 570.263 kb on - strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.317 kb on + strand, within ABIE40_RS22170at 570.317 kb on + strand, within ABIE40_RS22170at 570.318 kb on - strand, within ABIE40_RS22170at 570.339 kb on + strand, within ABIE40_RS22170at 570.340 kb on - strand, within ABIE40_RS22170at 570.357 kb on + strand, within ABIE40_RS22170at 570.358 kb on - strand, within ABIE40_RS22170at 570.358 kb on - strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.473 kb on + strand, within ABIE40_RS22170at 570.473 kb on + strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.476 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.527 kb on + strand, within ABIE40_RS22170at 570.527 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.678 kb on - strand, within ABIE40_RS22170at 570.738 kb on - strand, within ABIE40_RS22170at 570.783 kb on + strandat 570.802 kb on + strandat 570.802 kb on + strandat 570.802 kb on + strandat 570.802 kb on + strandat 570.803 kb on - strandat 570.840 kb on + strandat 570.841 kb on - strandat 570.903 kb on + strandat 570.903 kb on + strandat 570.903 kb on + strandat 570.904 kb on - strandat 570.904 kb on - strandat 570.925 kb on + strandat 570.944 kb on - strandat 570.945 kb on + strandat 570.945 kb on + strandat 570.946 kb on - strandat 570.946 kb on - strandat 570.946 kb on - strandat 570.946 kb on - strandat 570.984 kb on + strandat 571.178 kb on + strand, within ABIE40_RS22175at 571.178 kb on + strand, within ABIE40_RS22175at 571.178 kb on + strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.280 kb on + strand, within ABIE40_RS22175at 571.281 kb on - strand, within ABIE40_RS22175at 571.281 kb on - strand, within ABIE40_RS22175at 571.281 kb on - strand, within ABIE40_RS22175at 571.415 kb on - strand, within ABIE40_RS22175at 571.623 kb on + strand, within ABIE40_RS22175at 571.689 kb on + strand, within ABIE40_RS22175at 571.690 kb on - strand, within ABIE40_RS22175at 571.690 kb on - strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.756 kb on - strand, within ABIE40_RS22175at 571.756 kb on - strand, within ABIE40_RS22175at 571.756 kb on - strand, within ABIE40_RS22175

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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568,970 + -0.4
569,227 + ABIE40_RS22165 0.38 -1.0
569,227 + ABIE40_RS22165 0.38 +0.1
569,343 + ABIE40_RS22165 0.51 +0.0
569,343 + ABIE40_RS22165 0.51 -0.3
569,343 + ABIE40_RS22165 0.51 -0.5
569,343 + ABIE40_RS22165 0.51 -0.3
569,344 - ABIE40_RS22165 0.51 -1.2
569,401 + ABIE40_RS22165 0.58 -0.2
569,401 + ABIE40_RS22165 0.58 -0.4
569,401 + ABIE40_RS22165 0.58 +0.6
569,401 + ABIE40_RS22165 0.58 +0.8
569,402 - ABIE40_RS22165 0.58 +0.2
569,488 + ABIE40_RS22165 0.67 -0.5
569,488 + ABIE40_RS22165 0.67 +0.4
569,488 + ABIE40_RS22165 0.67 -0.0
569,488 + ABIE40_RS22165 0.67 -0.2
569,489 - ABIE40_RS22165 0.68 -0.6
569,489 - ABIE40_RS22165 0.68 -0.7
569,489 - ABIE40_RS22165 0.68 -0.3
569,541 + ABIE40_RS22165 0.73 +1.0
569,541 + ABIE40_RS22165 0.73 -0.8
569,541 + ABIE40_RS22165 0.73 +1.4
569,541 + ABIE40_RS22165 0.73 -2.2
569,541 + ABIE40_RS22165 0.73 -0.1
569,542 - ABIE40_RS22165 0.73 -0.4
569,542 - ABIE40_RS22165 0.73 -1.1
569,605 + ABIE40_RS22165 0.81 -1.5
569,701 + -1.3
569,701 + -0.8
569,701 + -0.3
569,701 + +1.2
569,701 + +1.4
569,701 + +0.7
569,701 + +0.6
569,702 - +0.2
569,702 - -0.3
569,702 - -0.7
569,702 - +0.1
569,705 - +2.7
569,722 - +1.3
569,722 - -2.1
569,722 - -2.8
569,865 + +0.7
569,865 + -1.3
569,968 + ABIE40_RS22170 0.13 -0.0
569,968 + ABIE40_RS22170 0.13 -1.6
569,969 - ABIE40_RS22170 0.13 +0.1
569,969 - ABIE40_RS22170 0.13 -0.8
569,973 + ABIE40_RS22170 0.13 +1.0
569,973 + ABIE40_RS22170 0.13 +0.2
569,973 + ABIE40_RS22170 0.13 -1.6
569,974 - ABIE40_RS22170 0.13 -0.3
569,981 + ABIE40_RS22170 0.14 -0.5
569,981 + ABIE40_RS22170 0.14 +1.0
569,981 + ABIE40_RS22170 0.14 -1.5
569,981 + ABIE40_RS22170 0.14 -2.2
569,981 + ABIE40_RS22170 0.14 -0.4
569,982 - ABIE40_RS22170 0.14 -1.0
569,982 - ABIE40_RS22170 0.14 -0.6
569,982 - ABIE40_RS22170 0.14 +1.0
570,026 + ABIE40_RS22170 0.18 +3.0
570,066 + ABIE40_RS22170 0.22 +1.2
570,066 + ABIE40_RS22170 0.22 -0.6
570,067 - ABIE40_RS22170 0.22 -1.0
570,067 - ABIE40_RS22170 0.22 -1.7
570,067 - ABIE40_RS22170 0.22 +3.0
570,114 + ABIE40_RS22170 0.27 +0.2
570,114 + ABIE40_RS22170 0.27 -0.0
570,115 - ABIE40_RS22170 0.27 +2.0
570,115 - ABIE40_RS22170 0.27 +0.4
570,140 + ABIE40_RS22170 0.29 -0.1
570,140 + ABIE40_RS22170 0.29 -0.6
570,141 - ABIE40_RS22170 0.29 +0.5
570,141 - ABIE40_RS22170 0.29 +1.2
570,141 - ABIE40_RS22170 0.29 +0.4
570,179 + ABIE40_RS22170 0.33 -0.8
570,179 + ABIE40_RS22170 0.33 +1.0
570,179 + ABIE40_RS22170 0.33 -0.0
570,179 + ABIE40_RS22170 0.33 +1.4
570,179 + ABIE40_RS22170 0.33 +0.1
570,180 - ABIE40_RS22170 0.33 +0.7
570,180 - ABIE40_RS22170 0.33 -1.5
570,262 + ABIE40_RS22170 0.41 -0.3
570,262 + ABIE40_RS22170 0.41 -0.8
570,263 - ABIE40_RS22170 0.41 -0.6
570,263 - ABIE40_RS22170 0.41 +1.5
570,269 + ABIE40_RS22170 0.42 +0.4
570,269 + ABIE40_RS22170 0.42 +1.6
570,269 + ABIE40_RS22170 0.42 -1.8
570,269 + ABIE40_RS22170 0.42 -1.7
570,269 + ABIE40_RS22170 0.42 -1.5
570,270 - ABIE40_RS22170 0.42 +0.7
570,270 - ABIE40_RS22170 0.42 -0.0
570,270 - ABIE40_RS22170 0.42 +1.2
570,317 + ABIE40_RS22170 0.46 -1.2
570,317 + ABIE40_RS22170 0.46 -2.3
570,318 - ABIE40_RS22170 0.46 -0.4
570,339 + ABIE40_RS22170 0.49 -0.9
570,340 - ABIE40_RS22170 0.49 -0.5
570,357 + ABIE40_RS22170 0.50 -1.0
570,358 - ABIE40_RS22170 0.50 -1.5
570,358 - ABIE40_RS22170 0.50 -0.3
570,467 + ABIE40_RS22170 0.61 -0.8
570,467 + ABIE40_RS22170 0.61 +1.3
570,467 + ABIE40_RS22170 0.61 +1.6
570,467 + ABIE40_RS22170 0.61 -1.9
570,467 + ABIE40_RS22170 0.61 +2.0
570,467 + ABIE40_RS22170 0.61 -1.5
570,467 + ABIE40_RS22170 0.61 +0.8
570,467 + ABIE40_RS22170 0.61 -0.8
570,467 + ABIE40_RS22170 0.61 -0.9
570,468 - ABIE40_RS22170 0.61 -0.6
570,468 - ABIE40_RS22170 0.61 -2.0
570,468 - ABIE40_RS22170 0.61 -1.2
570,468 - ABIE40_RS22170 0.61 -2.8
570,473 + ABIE40_RS22170 0.61 +1.2
570,473 + ABIE40_RS22170 0.61 -1.6
570,474 - ABIE40_RS22170 0.62 -1.7
570,474 - ABIE40_RS22170 0.62 +1.2
570,474 - ABIE40_RS22170 0.62 +1.0
570,474 - ABIE40_RS22170 0.62 +0.8
570,476 + ABIE40_RS22170 0.62 -0.6
570,513 + ABIE40_RS22170 0.65 -2.0
570,513 + ABIE40_RS22170 0.65 -1.9
570,513 + ABIE40_RS22170 0.65 -0.5
570,514 - ABIE40_RS22170 0.65 -1.6
570,514 - ABIE40_RS22170 0.65 -1.2
570,514 - ABIE40_RS22170 0.65 -1.3
570,527 + ABIE40_RS22170 0.67 +0.7
570,527 + ABIE40_RS22170 0.67 -1.8
570,673 + ABIE40_RS22170 0.81 +1.0
570,673 + ABIE40_RS22170 0.81 -1.3
570,673 + ABIE40_RS22170 0.81 -2.7
570,673 + ABIE40_RS22170 0.81 +0.2
570,673 + ABIE40_RS22170 0.81 +0.4
570,674 - ABIE40_RS22170 0.81 -2.7
570,674 - ABIE40_RS22170 0.81 -2.3
570,674 - ABIE40_RS22170 0.81 -0.8
570,674 - ABIE40_RS22170 0.81 +0.4
570,674 - ABIE40_RS22170 0.81 -0.9
570,674 - ABIE40_RS22170 0.81 -0.0
570,678 - ABIE40_RS22170 0.81 +1.0
570,738 - ABIE40_RS22170 0.87 +0.6
570,783 + +1.1
570,802 + -1.9
570,802 + +0.7
570,802 + -0.5
570,802 + -1.6
570,803 - -0.0
570,840 + +0.5
570,841 - -2.3
570,903 + -3.4
570,903 + -1.3
570,903 + -0.9
570,904 - -0.3
570,904 - -1.0
570,925 + +1.0
570,944 - -1.2
570,945 + -2.3
570,945 + -0.3
570,946 - -0.5
570,946 - +1.4
570,946 - +1.7
570,946 - +0.3
570,984 + +0.2
571,178 + ABIE40_RS22175 0.16 -0.6
571,178 + ABIE40_RS22175 0.16 -0.8
571,178 + ABIE40_RS22175 0.16 -2.0
571,179 - ABIE40_RS22175 0.16 +0.4
571,179 - ABIE40_RS22175 0.16 -0.3
571,179 - ABIE40_RS22175 0.16 -1.3
571,179 - ABIE40_RS22175 0.16 +1.0
571,280 + ABIE40_RS22175 0.25 +0.0
571,281 - ABIE40_RS22175 0.25 -0.4
571,281 - ABIE40_RS22175 0.25 +0.2
571,281 - ABIE40_RS22175 0.25 -0.1
571,415 - ABIE40_RS22175 0.36 +0.8
571,623 + ABIE40_RS22175 0.53 -0.1
571,689 + ABIE40_RS22175 0.59 -1.0
571,690 - ABIE40_RS22175 0.59 -0.3
571,690 - ABIE40_RS22175 0.59 -0.8
571,755 + ABIE40_RS22175 0.64 -0.8
571,755 + ABIE40_RS22175 0.64 -0.5
571,755 + ABIE40_RS22175 0.64 +1.4
571,755 + ABIE40_RS22175 0.64 -0.0
571,755 + ABIE40_RS22175 0.64 -0.3
571,756 - ABIE40_RS22175 0.64 -0.9
571,756 - ABIE40_RS22175 0.64 +1.5
571,756 - ABIE40_RS22175 0.64 -0.6

Or see this region's nucleotide sequence