Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08650

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS08645 and ABIE40_RS08650 are separated by 64 nucleotidesABIE40_RS08650 and ABIE40_RS08655 are separated by 108 nucleotides ABIE40_RS08645: ABIE40_RS08645 - LL-diaminopimelate aminotransferase, at 1,668,826 to 1,670,043 _RS08645 ABIE40_RS08650: ABIE40_RS08650 - homoserine dehydrogenase, at 1,670,108 to 1,671,430 _RS08650 ABIE40_RS08655: ABIE40_RS08655 - single-stranded-DNA-specific exonuclease RecJ, at 1,671,539 to 1,673,344 _RS08655 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -2 -1 0 1 2at 1669.201 kb on + strand, within ABIE40_RS08645at 1669.342 kb on + strand, within ABIE40_RS08645at 1669.384 kb on + strand, within ABIE40_RS08645at 1669.384 kb on + strand, within ABIE40_RS08645at 1669.622 kb on - strand, within ABIE40_RS08645at 1669.918 kb on + strand, within ABIE40_RS08645at 1669.918 kb on + strand, within ABIE40_RS08645at 1669.918 kb on + strand, within ABIE40_RS08645at 1669.918 kb on + strand, within ABIE40_RS08645at 1669.919 kb on - strand, within ABIE40_RS08645at 1669.919 kb on - strand, within ABIE40_RS08645at 1670.044 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.474 kb on + strandat 1671.486 kb on + strandat 1671.492 kb on + strandat 1671.492 kb on + strandat 1671.492 kb on + strandat 1671.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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1,669,201 + ABIE40_RS08645 0.31 -1.2
1,669,342 + ABIE40_RS08645 0.42 -1.1
1,669,384 + ABIE40_RS08645 0.46 +0.1
1,669,384 + ABIE40_RS08645 0.46 +1.2
1,669,622 - ABIE40_RS08645 0.65 -0.9
1,669,918 + ABIE40_RS08645 0.90 +1.1
1,669,918 + ABIE40_RS08645 0.90 -0.7
1,669,918 + ABIE40_RS08645 0.90 -0.0
1,669,918 + ABIE40_RS08645 0.90 +0.5
1,669,919 - ABIE40_RS08645 0.90 +1.0
1,669,919 - ABIE40_RS08645 0.90 -1.6
1,670,044 + +0.9
1,671,474 + +0.8
1,671,474 + -0.9
1,671,474 + +0.4
1,671,474 + +0.2
1,671,474 + -0.2
1,671,474 + +0.8
1,671,474 + +2.6
1,671,474 + +0.3
1,671,474 + -0.8
1,671,486 + -0.2
1,671,492 + -0.3
1,671,492 + -0.2
1,671,492 + +0.4
1,671,492 + -2.2

Or see this region's nucleotide sequence