Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27045

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27040 and ABIE40_RS27045 are separated by 236 nucleotidesABIE40_RS27045 and ABIE40_RS27050 are separated by 494 nucleotides ABIE40_RS27040: ABIE40_RS27040 - lipocalin-like domain-containing protein, at 125,985 to 127,058 _RS27040 ABIE40_RS27045: ABIE40_RS27045 - alpha/beta hydrolase, at 127,295 to 128,065 _RS27045 ABIE40_RS27050: ABIE40_RS27050 - hypothetical protein, at 128,560 to 128,958 _RS27050 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 126.327 kb on + strand, within ABIE40_RS27040at 126.327 kb on + strand, within ABIE40_RS27040at 126.327 kb on + strand, within ABIE40_RS27040at 126.327 kb on + strand, within ABIE40_RS27040at 126.327 kb on + strand, within ABIE40_RS27040at 126.328 kb on - strand, within ABIE40_RS27040at 126.328 kb on - strand, within ABIE40_RS27040at 126.401 kb on - strand, within ABIE40_RS27040at 126.401 kb on - strand, within ABIE40_RS27040at 126.463 kb on + strand, within ABIE40_RS27040at 126.463 kb on + strand, within ABIE40_RS27040at 126.464 kb on - strand, within ABIE40_RS27040at 126.485 kb on + strand, within ABIE40_RS27040at 126.486 kb on - strand, within ABIE40_RS27040at 126.576 kb on + strand, within ABIE40_RS27040at 126.576 kb on + strand, within ABIE40_RS27040at 126.576 kb on + strand, within ABIE40_RS27040at 126.576 kb on + strand, within ABIE40_RS27040at 126.576 kb on + strand, within ABIE40_RS27040at 126.577 kb on - strand, within ABIE40_RS27040at 126.577 kb on - strand, within ABIE40_RS27040at 126.577 kb on - strand, within ABIE40_RS27040at 126.577 kb on - strand, within ABIE40_RS27040at 126.577 kb on - strand, within ABIE40_RS27040at 126.577 kb on - strand, within ABIE40_RS27040at 126.579 kb on + strand, within ABIE40_RS27040at 126.580 kb on - strand, within ABIE40_RS27040at 126.583 kb on - strand, within ABIE40_RS27040at 126.583 kb on - strand, within ABIE40_RS27040at 126.583 kb on - strand, within ABIE40_RS27040at 126.597 kb on + strand, within ABIE40_RS27040at 126.597 kb on + strand, within ABIE40_RS27040at 126.598 kb on - strand, within ABIE40_RS27040at 126.598 kb on - strand, within ABIE40_RS27040at 126.616 kb on + strand, within ABIE40_RS27040at 126.616 kb on + strand, within ABIE40_RS27040at 126.616 kb on + strand, within ABIE40_RS27040at 126.635 kb on + strand, within ABIE40_RS27040at 126.635 kb on + strand, within ABIE40_RS27040at 126.635 kb on + strand, within ABIE40_RS27040at 126.786 kb on - strand, within ABIE40_RS27040at 126.786 kb on - strand, within ABIE40_RS27040at 126.971 kb on + strandat 126.971 kb on + strandat 126.971 kb on + strandat 126.972 kb on - strandat 126.985 kb on - strandat 127.014 kb on + strandat 127.016 kb on + strandat 127.017 kb on - strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.027 kb on + strandat 127.028 kb on - strandat 127.032 kb on + strandat 127.106 kb on + strandat 127.106 kb on + strandat 127.107 kb on - strandat 127.131 kb on + strandat 127.132 kb on - strandat 127.363 kb on + strandat 127.364 kb on - strandat 127.381 kb on - strand, within ABIE40_RS27045at 127.409 kb on - strand, within ABIE40_RS27045at 127.409 kb on - strand, within ABIE40_RS27045at 127.409 kb on - strand, within ABIE40_RS27045at 127.409 kb on - strand, within ABIE40_RS27045at 127.515 kb on + strand, within ABIE40_RS27045at 127.529 kb on - strand, within ABIE40_RS27045at 127.549 kb on - strand, within ABIE40_RS27045at 127.559 kb on + strand, within ABIE40_RS27045at 127.559 kb on + strand, within ABIE40_RS27045at 127.559 kb on + strand, within ABIE40_RS27045at 127.560 kb on - strand, within ABIE40_RS27045at 127.560 kb on - strand, within ABIE40_RS27045at 127.560 kb on - strand, within ABIE40_RS27045at 127.759 kb on + strand, within ABIE40_RS27045at 127.820 kb on - strand, within ABIE40_RS27045at 127.899 kb on + strand, within ABIE40_RS27045at 127.899 kb on + strand, within ABIE40_RS27045at 127.901 kb on + strand, within ABIE40_RS27045at 127.901 kb on + strand, within ABIE40_RS27045at 127.901 kb on + strand, within ABIE40_RS27045at 127.902 kb on - strand, within ABIE40_RS27045at 128.004 kb on + strandat 128.005 kb on - strandat 128.005 kb on - strandat 128.029 kb on - strandat 128.059 kb on + strandat 128.060 kb on - strandat 128.071 kb on - strandat 128.172 kb on + strandat 128.172 kb on + strandat 128.172 kb on + strandat 128.173 kb on - strandat 128.174 kb on + strandat 128.175 kb on - strandat 128.175 kb on - strandat 128.217 kb on + strandat 128.431 kb on - strandat 128.449 kb on + strandat 128.450 kb on - strandat 128.450 kb on - strandat 128.450 kb on - strandat 128.572 kb on + strandat 128.598 kb on - strandat 128.598 kb on - strandat 128.598 kb on - strandat 128.629 kb on - strand, within ABIE40_RS27050at 128.629 kb on - strand, within ABIE40_RS27050at 128.719 kb on + strand, within ABIE40_RS27050at 128.720 kb on - strand, within ABIE40_RS27050at 128.732 kb on + strand, within ABIE40_RS27050at 128.732 kb on + strand, within ABIE40_RS27050at 128.733 kb on - strand, within ABIE40_RS27050at 128.733 kb on - strand, within ABIE40_RS27050at 128.733 kb on - strand, within ABIE40_RS27050at 128.933 kb on + strandat 128.934 kb on - strandat 128.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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126,327 + ABIE40_RS27040 0.32 -0.6
126,327 + ABIE40_RS27040 0.32 -0.4
126,327 + ABIE40_RS27040 0.32 +3.2
126,327 + ABIE40_RS27040 0.32 +3.6
126,327 + ABIE40_RS27040 0.32 -1.9
126,328 - ABIE40_RS27040 0.32 -2.7
126,328 - ABIE40_RS27040 0.32 -1.4
126,401 - ABIE40_RS27040 0.39 -0.5
126,401 - ABIE40_RS27040 0.39 -0.3
126,463 + ABIE40_RS27040 0.45 +1.4
126,463 + ABIE40_RS27040 0.45 +0.7
126,464 - ABIE40_RS27040 0.45 +0.0
126,485 + ABIE40_RS27040 0.47 +1.2
126,486 - ABIE40_RS27040 0.47 +0.7
126,576 + ABIE40_RS27040 0.55 -1.6
126,576 + ABIE40_RS27040 0.55 -0.6
126,576 + ABIE40_RS27040 0.55 -2.2
126,576 + ABIE40_RS27040 0.55 -0.1
126,576 + ABIE40_RS27040 0.55 +0.2
126,577 - ABIE40_RS27040 0.55 -1.9
126,577 - ABIE40_RS27040 0.55 +1.6
126,577 - ABIE40_RS27040 0.55 -1.1
126,577 - ABIE40_RS27040 0.55 -0.9
126,577 - ABIE40_RS27040 0.55 -1.8
126,577 - ABIE40_RS27040 0.55 -3.4
126,579 + ABIE40_RS27040 0.55 -1.1
126,580 - ABIE40_RS27040 0.55 -0.8
126,583 - ABIE40_RS27040 0.56 -0.4
126,583 - ABIE40_RS27040 0.56 -1.3
126,583 - ABIE40_RS27040 0.56 -1.2
126,597 + ABIE40_RS27040 0.57 -1.9
126,597 + ABIE40_RS27040 0.57 +0.6
126,598 - ABIE40_RS27040 0.57 +0.7
126,598 - ABIE40_RS27040 0.57 -3.2
126,616 + ABIE40_RS27040 0.59 +0.1
126,616 + ABIE40_RS27040 0.59 +0.8
126,616 + ABIE40_RS27040 0.59 -2.4
126,635 + ABIE40_RS27040 0.61 +0.0
126,635 + ABIE40_RS27040 0.61 -1.1
126,635 + ABIE40_RS27040 0.61 +1.1
126,786 - ABIE40_RS27040 0.75 -0.4
126,786 - ABIE40_RS27040 0.75 +0.6
126,971 + -0.1
126,971 + -0.8
126,971 + -0.1
126,972 - -1.7
126,985 - +2.2
127,014 + +0.1
127,016 + -1.6
127,017 - +0.1
127,027 + +0.6
127,027 + +0.7
127,027 + +1.0
127,027 + +0.5
127,027 + -2.2
127,028 - -0.9
127,032 + -1.9
127,106 + -1.6
127,106 + +0.2
127,107 - +1.2
127,131 + +1.1
127,132 - +1.2
127,363 + +0.1
127,364 - -0.6
127,381 - ABIE40_RS27045 0.11 +2.2
127,409 - ABIE40_RS27045 0.15 +1.2
127,409 - ABIE40_RS27045 0.15 -0.9
127,409 - ABIE40_RS27045 0.15 -0.1
127,409 - ABIE40_RS27045 0.15 +0.2
127,515 + ABIE40_RS27045 0.29 +0.4
127,529 - ABIE40_RS27045 0.30 -1.8
127,549 - ABIE40_RS27045 0.33 -0.4
127,559 + ABIE40_RS27045 0.34 -1.9
127,559 + ABIE40_RS27045 0.34 -2.4
127,559 + ABIE40_RS27045 0.34 +2.2
127,560 - ABIE40_RS27045 0.34 -2.9
127,560 - ABIE40_RS27045 0.34 +1.0
127,560 - ABIE40_RS27045 0.34 +1.2
127,759 + ABIE40_RS27045 0.60 +0.9
127,820 - ABIE40_RS27045 0.68 -1.5
127,899 + ABIE40_RS27045 0.78 +0.7
127,899 + ABIE40_RS27045 0.78 -0.7
127,901 + ABIE40_RS27045 0.79 +1.5
127,901 + ABIE40_RS27045 0.79 +1.0
127,901 + ABIE40_RS27045 0.79 +0.8
127,902 - ABIE40_RS27045 0.79 +1.2
128,004 + +1.2
128,005 - +1.2
128,005 - +1.2
128,029 - -0.4
128,059 + +0.3
128,060 - +0.6
128,071 - +1.2
128,172 + +2.2
128,172 + -1.0
128,172 + -0.6
128,173 - +0.2
128,174 + -0.3
128,175 - -1.9
128,175 - -0.8
128,217 + +0.6
128,431 - -3.0
128,449 + +2.5
128,450 - +0.6
128,450 - +0.6
128,450 - -2.6
128,572 + +3.2
128,598 - +0.6
128,598 - -1.9
128,598 - -0.6
128,629 - ABIE40_RS27050 0.17 -0.1
128,629 - ABIE40_RS27050 0.17 -2.0
128,719 + ABIE40_RS27050 0.40 -2.4
128,720 - ABIE40_RS27050 0.40 +0.2
128,732 + ABIE40_RS27050 0.43 -0.6
128,732 + ABIE40_RS27050 0.43 +4.6
128,733 - ABIE40_RS27050 0.43 -2.5
128,733 - ABIE40_RS27050 0.43 +2.2
128,733 - ABIE40_RS27050 0.43 +1.8
128,933 + -0.2
128,934 - -2.0
128,934 - +0.6

Or see this region's nucleotide sequence