Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS25280 and ABIE40_RS25285 are separated by 24 nucleotides ABIE40_RS25285 and ABIE40_RS25290 are separated by 7 nucleotides ABIE40_RS25290 and ABIE40_RS25295 overlap by 4 nucleotides
ABIE40_RS25280: ABIE40_RS25280 - GGDEF domain-containing phosphodiesterase, at 1,231,122 to 1,232,924
_RS25280
ABIE40_RS25285: ABIE40_RS25285 - cupin domain-containing protein, at 1,232,949 to 1,233,278
_RS25285
ABIE40_RS25290: ABIE40_RS25290 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 1,233,286 to 1,234,041
_RS25290
ABIE40_RS25295: ABIE40_RS25295 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,234,038 to 1,234,880
_RS25295
Position (kb) 1232
1233
1234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1232.037 kb on + strand, within ABIE40_RS25280 at 1232.038 kb on - strand, within ABIE40_RS25280 at 1232.038 kb on - strand, within ABIE40_RS25280 at 1232.038 kb on - strand, within ABIE40_RS25280 at 1232.169 kb on + strand, within ABIE40_RS25280 at 1232.169 kb on + strand, within ABIE40_RS25280 at 1232.169 kb on + strand, within ABIE40_RS25280 at 1232.169 kb on + strand, within ABIE40_RS25280 at 1232.169 kb on + strand, within ABIE40_RS25280 at 1232.170 kb on - strand, within ABIE40_RS25280 at 1232.170 kb on - strand, within ABIE40_RS25280 at 1232.170 kb on - strand, within ABIE40_RS25280 at 1232.170 kb on - strand, within ABIE40_RS25280 at 1232.170 kb on - strand, within ABIE40_RS25280 at 1232.170 kb on - strand, within ABIE40_RS25280 at 1232.295 kb on - strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.479 kb on + strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.480 kb on - strand, within ABIE40_RS25280 at 1232.505 kb on + strand, within ABIE40_RS25280 at 1232.506 kb on - strand, within ABIE40_RS25280 at 1232.598 kb on + strand, within ABIE40_RS25280 at 1232.598 kb on + strand, within ABIE40_RS25280 at 1232.598 kb on + strand, within ABIE40_RS25280 at 1232.599 kb on - strand, within ABIE40_RS25280 at 1232.599 kb on - strand, within ABIE40_RS25280 at 1232.621 kb on + strand, within ABIE40_RS25280 at 1232.655 kb on + strand, within ABIE40_RS25280 at 1232.951 kb on - strand at 1232.951 kb on - strand at 1232.952 kb on + strand at 1232.952 kb on + strand at 1232.952 kb on + strand at 1232.952 kb on + strand at 1232.952 kb on + strand at 1232.952 kb on + strand at 1232.952 kb on + strand at 1232.953 kb on - strand at 1232.953 kb on - strand at 1232.953 kb on - strand at 1232.953 kb on - strand at 1232.953 kb on - strand at 1233.112 kb on + strand, within ABIE40_RS25285 at 1233.112 kb on + strand, within ABIE40_RS25285 at 1233.113 kb on - strand, within ABIE40_RS25285 at 1233.113 kb on - strand, within ABIE40_RS25285 at 1233.113 kb on - strand, within ABIE40_RS25285 at 1233.113 kb on - strand, within ABIE40_RS25285 at 1233.113 kb on - strand, within ABIE40_RS25285 at 1233.113 kb on - strand, within ABIE40_RS25285 at 1233.125 kb on + strand, within ABIE40_RS25285 at 1233.126 kb on - strand, within ABIE40_RS25285 at 1233.335 kb on + strand at 1233.335 kb on + strand at 1233.336 kb on - strand at 1233.336 kb on - strand at 1233.336 kb on - strand at 1233.336 kb on - strand at 1233.378 kb on + strand, within ABIE40_RS25290 at 1233.378 kb on + strand, within ABIE40_RS25290 at 1233.378 kb on + strand, within ABIE40_RS25290 at 1233.378 kb on + strand, within ABIE40_RS25290 at 1233.378 kb on + strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.379 kb on - strand, within ABIE40_RS25290 at 1233.463 kb on - strand, within ABIE40_RS25290 at 1233.480 kb on - strand, within ABIE40_RS25290 at 1233.576 kb on - strand, within ABIE40_RS25290 at 1233.842 kb on - strand, within ABIE40_RS25290 at 1234.256 kb on - strand, within ABIE40_RS25295 at 1234.256 kb on - strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.261 kb on + strand, within ABIE40_RS25295 at 1234.262 kb on - strand, within ABIE40_RS25295 at 1234.262 kb on - strand, within ABIE40_RS25295
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM remove 1,232,037 + ABIE40_RS25280 0.51 +0.5 1,232,038 - ABIE40_RS25280 0.51 +0.1 1,232,038 - ABIE40_RS25280 0.51 +0.6 1,232,038 - ABIE40_RS25280 0.51 -0.9 1,232,169 + ABIE40_RS25280 0.58 -1.8 1,232,169 + ABIE40_RS25280 0.58 +0.3 1,232,169 + ABIE40_RS25280 0.58 -0.7 1,232,169 + ABIE40_RS25280 0.58 -0.1 1,232,169 + ABIE40_RS25280 0.58 +0.8 1,232,170 - ABIE40_RS25280 0.58 +0.7 1,232,170 - ABIE40_RS25280 0.58 -0.1 1,232,170 - ABIE40_RS25280 0.58 -0.1 1,232,170 - ABIE40_RS25280 0.58 -3.0 1,232,170 - ABIE40_RS25280 0.58 +0.3 1,232,170 - ABIE40_RS25280 0.58 -0.3 1,232,295 - ABIE40_RS25280 0.65 -2.7 1,232,479 + ABIE40_RS25280 0.75 +0.1 1,232,479 + ABIE40_RS25280 0.75 -0.0 1,232,479 + ABIE40_RS25280 0.75 -3.6 1,232,479 + ABIE40_RS25280 0.75 -0.3 1,232,479 + ABIE40_RS25280 0.75 -0.8 1,232,479 + ABIE40_RS25280 0.75 +0.0 1,232,479 + ABIE40_RS25280 0.75 -1.4 1,232,479 + ABIE40_RS25280 0.75 +0.9 1,232,479 + ABIE40_RS25280 0.75 -0.8 1,232,479 + ABIE40_RS25280 0.75 -1.7 1,232,480 - ABIE40_RS25280 0.75 -0.4 1,232,480 - ABIE40_RS25280 0.75 -1.1 1,232,480 - ABIE40_RS25280 0.75 +0.1 1,232,480 - ABIE40_RS25280 0.75 +2.2 1,232,480 - ABIE40_RS25280 0.75 +0.8 1,232,480 - ABIE40_RS25280 0.75 +0.4 1,232,480 - ABIE40_RS25280 0.75 -1.8 1,232,480 - ABIE40_RS25280 0.75 +1.9 1,232,505 + ABIE40_RS25280 0.77 -2.0 1,232,506 - ABIE40_RS25280 0.77 -0.4 1,232,598 + ABIE40_RS25280 0.82 +0.3 1,232,598 + ABIE40_RS25280 0.82 -2.1 1,232,598 + ABIE40_RS25280 0.82 -0.4 1,232,599 - ABIE40_RS25280 0.82 -1.7 1,232,599 - ABIE40_RS25280 0.82 -2.2 1,232,621 + ABIE40_RS25280 0.83 -2.5 1,232,655 + ABIE40_RS25280 0.85 +0.7 1,232,951 - -0.9 1,232,951 - -0.9 1,232,952 + +1.3 1,232,952 + +0.8 1,232,952 + +0.8 1,232,952 + -0.9 1,232,952 + +1.6 1,232,952 + +0.1 1,232,952 + +0.9 1,232,953 - +0.9 1,232,953 - -1.2 1,232,953 - -1.5 1,232,953 - -0.1 1,232,953 - -0.8 1,233,112 + ABIE40_RS25285 0.49 -1.2 1,233,112 + ABIE40_RS25285 0.49 -0.6 1,233,113 - ABIE40_RS25285 0.50 +0.5 1,233,113 - ABIE40_RS25285 0.50 +0.1 1,233,113 - ABIE40_RS25285 0.50 +1.9 1,233,113 - ABIE40_RS25285 0.50 +0.7 1,233,113 - ABIE40_RS25285 0.50 -0.4 1,233,113 - ABIE40_RS25285 0.50 -0.0 1,233,125 + ABIE40_RS25285 0.53 +0.4 1,233,126 - ABIE40_RS25285 0.54 +1.0 1,233,335 + +0.4 1,233,335 + -0.9 1,233,336 - +0.3 1,233,336 - -0.7 1,233,336 - +0.4 1,233,336 - -2.4 1,233,378 + ABIE40_RS25290 0.12 +0.2 1,233,378 + ABIE40_RS25290 0.12 -0.5 1,233,378 + ABIE40_RS25290 0.12 +0.3 1,233,378 + ABIE40_RS25290 0.12 -0.2 1,233,378 + ABIE40_RS25290 0.12 +0.3 1,233,379 - ABIE40_RS25290 0.12 +0.1 1,233,379 - ABIE40_RS25290 0.12 +0.1 1,233,379 - ABIE40_RS25290 0.12 +0.3 1,233,379 - ABIE40_RS25290 0.12 +0.6 1,233,379 - ABIE40_RS25290 0.12 +0.6 1,233,379 - ABIE40_RS25290 0.12 -3.1 1,233,379 - ABIE40_RS25290 0.12 -1.1 1,233,463 - ABIE40_RS25290 0.23 +2.0 1,233,480 - ABIE40_RS25290 0.26 +1.0 1,233,576 - ABIE40_RS25290 0.38 +0.3 1,233,842 - ABIE40_RS25290 0.74 +0.0 1,234,256 - ABIE40_RS25295 0.26 -1.1 1,234,256 - ABIE40_RS25295 0.26 +0.5 1,234,261 + ABIE40_RS25295 0.26 -0.2 1,234,261 + ABIE40_RS25295 0.26 -1.3 1,234,261 + ABIE40_RS25295 0.26 -1.8 1,234,261 + ABIE40_RS25295 0.26 -0.7 1,234,261 + ABIE40_RS25295 0.26 -1.2 1,234,261 + ABIE40_RS25295 0.26 -0.5 1,234,261 + ABIE40_RS25295 0.26 -0.7 1,234,261 + ABIE40_RS25295 0.26 -1.2 1,234,261 + ABIE40_RS25295 0.26 +1.4 1,234,261 + ABIE40_RS25295 0.26 +0.6 1,234,261 + ABIE40_RS25295 0.26 -0.1 1,234,262 - ABIE40_RS25295 0.27 -0.1 1,234,262 - ABIE40_RS25295 0.27 -0.4
Or see this region's nucleotide sequence