Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12290

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
2,392,920	+		ABIE40_RS12285	0.72	-3.3
2,392,920	+		ABIE40_RS12285	0.72	-0.3
2,392,921	-		ABIE40_RS12285	0.72	-1.1
2,392,937	+		ABIE40_RS12285	0.76	-1.5
2,392,937	+		ABIE40_RS12285	0.76	-0.2
2,392,938	-		ABIE40_RS12285	0.76	-2.8
2,393,014	+				-0.9
2,393,055	+				-1.6
2,393,071	+				-1.5
2,393,072	-				-3.0
2,393,076	+				-2.1
2,393,076	+				-1.9
2,393,085	-				+0.1
2,393,085	-				-2.7
2,393,103	-				-1.9
2,393,129	+				-0.1
2,393,129	+				+0.3
2,393,130	-				-0.6
2,393,134	+				-1.7
2,393,135	-				-1.1
2,393,331	+				-3.0
2,393,331	+				+3.1
2,393,331	+				-1.8
2,393,331	+				-0.9
2,393,332	-				-3.2
2,393,332	-				-1.7
2,393,333	-				-1.2
2,393,447	+				-0.9
2,393,447	+				-3.7
2,393,447	+				-0.7
2,393,447	+				-0.1
2,393,447	+				+0.2
2,393,447	+				-1.1
2,393,447	+				+0.6
2,393,448	-				-0.8
2,393,448	-				-2.4
2,393,448	-				-1.1
2,393,448	-				-1.9
2,393,448	-				-1.1
2,393,449	+				-1.5
2,393,449	+				-1.1
2,393,449	+				+0.4
2,393,450	-				-2.0
2,393,450	-				-1.4
2,393,450	-				-2.6
2,393,450	-				-0.5
2,393,450	-				-1.3
2,393,450	-				-1.4
2,393,450	-				+0.2
2,393,484	-				+1.5
2,393,484	-				-0.5
2,393,487	+				-3.8
2,393,487	+				+0.6
2,393,488	-				+0.7
2,393,488	-				+0.5
2,393,491	+				-2.5
2,393,491	+				+2.1
2,393,491	+				-0.6
2,393,491	+				-0.6
2,393,492	-				+0.4
2,393,492	-				-1.2
2,393,492	-				-1.5
2,393,492	-				-1.8
2,393,492	-				+0.3
2,393,492	-				-0.2
2,393,492	-				+2.1
2,393,492	-				-0.2
2,393,525	+				-1.8
2,393,526	-				-2.4
2,393,545	+				+0.7
2,393,545	+				-0.9
2,393,545	+				-0.9
2,393,546	-				+0.1
2,393,546	-				-1.4
2,393,546	-				+0.1
2,393,606	+				-1.4
2,393,735	+				-0.2
2,393,735	+				+0.2
2,393,736	-				-1.5
2,393,736	-				-0.5
2,393,736	-				-2.6
2,393,789	+				-0.9
2,393,789	+				-0.5
2,393,789	+				-0.9
2,393,789	+				+0.5
2,393,790	-				-1.2
2,393,790	-				-0.6
2,393,790	-				-1.5
2,393,790	-				-1.4
2,393,790	-				-0.2
2,393,836	-				-0.9
2,393,845	-				-0.9
2,393,891	+				+0.1
2,393,891	+				-1.1
2,393,891	+				+0.5
2,393,892	-				-0.5
2,393,892	-				+0.4
2,393,892	-				+1.6
2,393,893	+				-2.0
2,393,999	+		ABIE40_RS12290	0.21	-0.7
2,393,999	+		ABIE40_RS12290	0.21	+2.1
2,394,015	+		ABIE40_RS12290	0.23	-1.9
2,394,016	-		ABIE40_RS12290	0.24	-0.9
2,394,018	+		ABIE40_RS12290	0.24	-1.1
2,394,018	+		ABIE40_RS12290	0.24	-0.4
2,394,018	+		ABIE40_RS12290	0.24	-0.2
2,394,018	+		ABIE40_RS12290	0.24	-2.2
2,394,019	-		ABIE40_RS12290	0.24	-2.6
2,394,019	-		ABIE40_RS12290	0.24	-2.6
2,394,048	+		ABIE40_RS12290	0.29	-1.1
2,394,048	+		ABIE40_RS12290	0.29	+0.7
2,394,048	+		ABIE40_RS12290	0.29	-0.4
2,394,048	+		ABIE40_RS12290	0.29	-0.5
2,394,048	+		ABIE40_RS12290	0.29	-2.6
2,394,049	-		ABIE40_RS12290	0.29	+0.7
2,394,049	-		ABIE40_RS12290	0.29	-1.2
2,394,049	-		ABIE40_RS12290	0.29	-2.4
2,394,049	-		ABIE40_RS12290	0.29	+0.9
2,394,050	+		ABIE40_RS12290	0.29	-1.4
2,394,051	-		ABIE40_RS12290	0.29	+1.5
2,394,127	+		ABIE40_RS12290	0.42	-0.2
2,394,128	-		ABIE40_RS12290	0.42	-2.3
2,394,129	+		ABIE40_RS12290	0.42	-2.8
2,394,129	+		ABIE40_RS12290	0.42	+0.5
2,394,129	+		ABIE40_RS12290	0.42	-0.0
2,394,130	-		ABIE40_RS12290	0.42	-2.7
2,394,130	-		ABIE40_RS12290	0.42	+0.1
2,394,130	-		ABIE40_RS12290	0.42	+0.4
2,394,130	-		ABIE40_RS12290	0.42	+1.1
2,394,130	-		ABIE40_RS12290	0.42	+0.4
2,394,130	-		ABIE40_RS12290	0.42	+1.1
2,394,130	-		ABIE40_RS12290	0.42	-2.1
2,394,130	-		ABIE40_RS12290	0.42	-1.6
2,394,146	+		ABIE40_RS12290	0.45	+0.2
2,394,146	+		ABIE40_RS12290	0.45	+0.4
2,394,147	-		ABIE40_RS12290	0.45	-0.9
2,394,300	+		ABIE40_RS12290	0.70	-2.1
2,394,300	+		ABIE40_RS12290	0.70	-0.2
2,394,301	-		ABIE40_RS12290	0.70	-3.6
2,394,349	+		ABIE40_RS12290	0.78	+0.5
2,394,349	+		ABIE40_RS12290	0.78	-0.5
2,394,350	-		ABIE40_RS12290	0.78	-0.2
2,394,372	+		ABIE40_RS12290	0.81	-3.1
2,394,372	+		ABIE40_RS12290	0.81	+0.7
2,394,373	-		ABIE40_RS12290	0.82	+0.7
2,394,373	-		ABIE40_RS12290	0.82	-0.9
2,394,426	+				-1.2
2,394,426	+				-0.8
2,394,427	-				+1.3
2,394,427	-				-0.7
2,394,443	+				-1.2
2,394,444	-				+2.5
2,394,486	-		ABIE40_RS12295	0.15	-2.2
2,394,486	-		ABIE40_RS12295	0.15	+0.3
2,394,486	-		ABIE40_RS12295	0.15	+1.8
2,394,521	+		ABIE40_RS12295	0.31	-2.4
2,394,637	+		ABIE40_RS12295	0.84	-0.5
2,394,637	+		ABIE40_RS12295	0.84	+2.1
2,394,673	+				-1.7
2,394,688	+				-2.1
2,394,688	+				+1.2
2,394,688	+				+1.1
2,394,689	-				+0.3
2,394,689	-				-0.6
2,394,689	-				+0.5
2,394,689	-				-0.6
2,394,689	-				-0.4
2,394,690	+				+1.4
2,394,690	+				+0.1
2,394,690	+				-3.4
2,394,690	+				+1.5
2,394,691	-				+0.6
2,394,765	-				-0.9
2,394,765	-				-0.7
2,394,798	-				-1.0
2,394,970	+				+1.1
2,394,971	-				-2.0
2,394,998	+				-1.6
2,394,999	-				-0.3
2,394,999	-				+0.1
2,395,046	+		ABIE40_RS12300	0.11	+0.9
2,395,047	-		ABIE40_RS12300	0.11	-0.5
2,395,166	+		ABIE40_RS12300	0.15	-0.2
2,395,167	-		ABIE40_RS12300	0.15	-0.3
2,395,223	+		ABIE40_RS12300	0.17	-0.1
2,395,223	+		ABIE40_RS12300	0.17	-0.4
2,395,223	+		ABIE40_RS12300	0.17	-2.0
2,395,223	+		ABIE40_RS12300	0.17	-0.1
2,395,224	-		ABIE40_RS12300	0.17	-0.1
2,395,224	-		ABIE40_RS12300	0.17	+0.3
2,395,224	-		ABIE40_RS12300	0.17	+1.2
2,395,224	-		ABIE40_RS12300	0.17	+1.0
2,395,242	+		ABIE40_RS12300	0.18	+1.1
2,395,338	-		ABIE40_RS12300	0.21	+0.8
2,395,352	+		ABIE40_RS12300	0.21	+1.1
2,395,369	+		ABIE40_RS12300	0.22	-2.8
2,395,369	+		ABIE40_RS12300	0.22	-1.9
2,395,479	+		ABIE40_RS12300	0.25	+0.3
2,395,480	-		ABIE40_RS12300	0.25	-1.0