Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21140 and ABIE40_RS21145 are separated by 27 nucleotides ABIE40_RS21145 and ABIE40_RS21150 are separated by 22 nucleotides ABIE40_RS21150 and ABIE40_RS21155 are separated by 21 nucleotides
ABIE40_RS21140: ABIE40_RS21140 - metallophosphoesterase, at 342,903 to 344,057
_RS21140
ABIE40_RS21145: ABIE40_RS21145 - hypothetical protein, at 344,085 to 344,969
_RS21145
ABIE40_RS21150: ABIE40_RS21150 - threonine/serine dehydratase, at 344,992 to 345,939
_RS21150
ABIE40_RS21155: ABIE40_RS21155 - ornithine cyclodeaminase family protein, at 345,961 to 346,950
_RS21155
Position (kb) 344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 344.105 kb on + strand at 344.105 kb on + strand at 344.105 kb on + strand at 344.105 kb on + strand at 344.105 kb on + strand at 344.106 kb on - strand at 344.106 kb on - strand at 344.106 kb on - strand at 344.106 kb on - strand at 344.106 kb on - strand at 344.106 kb on - strand at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.194 kb on + strand, within ABIE40_RS21145 at 344.195 kb on - strand, within ABIE40_RS21145 at 344.195 kb on - strand, within ABIE40_RS21145 at 344.195 kb on - strand, within ABIE40_RS21145 at 344.195 kb on - strand, within ABIE40_RS21145 at 344.398 kb on + strand, within ABIE40_RS21145 at 344.398 kb on + strand, within ABIE40_RS21145 at 344.402 kb on + strand, within ABIE40_RS21145 at 344.503 kb on + strand, within ABIE40_RS21145 at 344.504 kb on - strand, within ABIE40_RS21145 at 344.602 kb on - strand, within ABIE40_RS21145 at 344.969 kb on + strand at 344.969 kb on + strand at 344.970 kb on - strand at 344.970 kb on - strand at 344.970 kb on - strand at 344.985 kb on + strand at 344.988 kb on + strand at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.314 kb on + strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.315 kb on - strand, within ABIE40_RS21150 at 345.432 kb on + strand, within ABIE40_RS21150 at 345.433 kb on - strand, within ABIE40_RS21150 at 345.506 kb on + strand, within ABIE40_RS21150 at 345.516 kb on + strand, within ABIE40_RS21150 at 345.516 kb on + strand, within ABIE40_RS21150 at 345.516 kb on + strand, within ABIE40_RS21150 at 345.517 kb on - strand, within ABIE40_RS21150 at 345.517 kb on - strand, within ABIE40_RS21150 at 345.517 kb on - strand, within ABIE40_RS21150 at 345.517 kb on - strand, within ABIE40_RS21150 at 345.517 kb on - strand, within ABIE40_RS21150 at 345.517 kb on - strand, within ABIE40_RS21150 at 345.518 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.519 kb on - strand, within ABIE40_RS21150 at 345.602 kb on + strand, within ABIE40_RS21150 at 345.602 kb on + strand, within ABIE40_RS21150 at 345.603 kb on - strand, within ABIE40_RS21150 at 345.686 kb on + strand, within ABIE40_RS21150 at 345.791 kb on + strand, within ABIE40_RS21150 at 345.791 kb on + strand, within ABIE40_RS21150 at 345.791 kb on + strand, within ABIE40_RS21150 at 345.792 kb on - strand, within ABIE40_RS21150 at 345.792 kb on - strand, within ABIE40_RS21150 at 345.827 kb on + strand, within ABIE40_RS21150 at 345.827 kb on + strand, within ABIE40_RS21150 at 345.828 kb on - strand, within ABIE40_RS21150 at 345.828 kb on - strand, within ABIE40_RS21150 at 345.828 kb on - strand, within ABIE40_RS21150 at 345.962 kb on + strand at 346.007 kb on + strand at 346.008 kb on + strand at 346.008 kb on + strand at 346.008 kb on + strand at 346.008 kb on + strand at 346.008 kb on + strand at 346.008 kb on + strand at 346.008 kb on + strand at 346.009 kb on - strand at 346.009 kb on - strand at 346.010 kb on + strand at 346.010 kb on + strand at 346.010 kb on + strand at 346.010 kb on + strand at 346.010 kb on + strand at 346.011 kb on - strand at 346.011 kb on - strand at 346.017 kb on - strand at 346.017 kb on - strand at 346.017 kb on - strand at 346.017 kb on - strand at 346.061 kb on + strand, within ABIE40_RS21155 at 346.061 kb on + strand, within ABIE40_RS21155 at 346.061 kb on + strand, within ABIE40_RS21155 at 346.062 kb on - strand, within ABIE40_RS21155 at 346.134 kb on + strand, within ABIE40_RS21155 at 346.134 kb on + strand, within ABIE40_RS21155 at 346.134 kb on + strand, within ABIE40_RS21155 at 346.134 kb on + strand, within ABIE40_RS21155 at 346.135 kb on - strand, within ABIE40_RS21155 at 346.135 kb on - strand, within ABIE40_RS21155 at 346.135 kb on - strand, within ABIE40_RS21155 at 346.135 kb on - strand, within ABIE40_RS21155 at 346.208 kb on + strand, within ABIE40_RS21155 at 346.208 kb on + strand, within ABIE40_RS21155 at 346.208 kb on + strand, within ABIE40_RS21155 at 346.208 kb on + strand, within ABIE40_RS21155 at 346.209 kb on - strand, within ABIE40_RS21155 at 346.209 kb on - strand, within ABIE40_RS21155 at 346.346 kb on - strand, within ABIE40_RS21155
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM remove 344,105 + +0.6 344,105 + -0.0 344,105 + -0.3 344,105 + +0.5 344,105 + -0.3 344,106 - +0.4 344,106 - +0.5 344,106 - -0.1 344,106 - +1.6 344,106 - +0.6 344,106 - +0.4 344,194 + ABIE40_RS21145 0.12 -2.3 344,194 + ABIE40_RS21145 0.12 +0.1 344,194 + ABIE40_RS21145 0.12 -1.3 344,194 + ABIE40_RS21145 0.12 -0.5 344,194 + ABIE40_RS21145 0.12 +0.4 344,194 + ABIE40_RS21145 0.12 -0.4 344,194 + ABIE40_RS21145 0.12 +0.7 344,194 + ABIE40_RS21145 0.12 +0.1 344,195 - ABIE40_RS21145 0.12 +0.5 344,195 - ABIE40_RS21145 0.12 +1.6 344,195 - ABIE40_RS21145 0.12 -0.2 344,195 - ABIE40_RS21145 0.12 +0.6 344,398 + ABIE40_RS21145 0.35 +0.9 344,398 + ABIE40_RS21145 0.35 +0.4 344,402 + ABIE40_RS21145 0.36 -2.0 344,503 + ABIE40_RS21145 0.47 +0.3 344,504 - ABIE40_RS21145 0.47 +0.1 344,602 - ABIE40_RS21145 0.58 -0.3 344,969 + -2.4 344,969 + -0.5 344,970 - -0.1 344,970 - +0.7 344,970 - -0.2 344,985 + +2.3 344,988 + +1.7 345,314 + ABIE40_RS21150 0.34 +0.7 345,314 + ABIE40_RS21150 0.34 +0.1 345,314 + ABIE40_RS21150 0.34 -0.5 345,314 + ABIE40_RS21150 0.34 +0.1 345,314 + ABIE40_RS21150 0.34 +0.1 345,314 + ABIE40_RS21150 0.34 -2.0 345,314 + ABIE40_RS21150 0.34 -0.4 345,314 + ABIE40_RS21150 0.34 +1.7 345,314 + ABIE40_RS21150 0.34 +0.7 345,314 + ABIE40_RS21150 0.34 +1.2 345,314 + ABIE40_RS21150 0.34 -0.3 345,314 + ABIE40_RS21150 0.34 +0.4 345,314 + ABIE40_RS21150 0.34 +0.1 345,314 + ABIE40_RS21150 0.34 -0.4 345,314 + ABIE40_RS21150 0.34 +0.7 345,315 - ABIE40_RS21150 0.34 +0.3 345,315 - ABIE40_RS21150 0.34 +3.7 345,315 - ABIE40_RS21150 0.34 +0.6 345,315 - ABIE40_RS21150 0.34 +0.1 345,315 - ABIE40_RS21150 0.34 +0.4 345,315 - ABIE40_RS21150 0.34 +1.7 345,315 - ABIE40_RS21150 0.34 -0.9 345,315 - ABIE40_RS21150 0.34 +1.4 345,315 - ABIE40_RS21150 0.34 +0.8 345,315 - ABIE40_RS21150 0.34 +0.3 345,315 - ABIE40_RS21150 0.34 +0.3 345,432 + ABIE40_RS21150 0.46 -1.6 345,433 - ABIE40_RS21150 0.47 -0.2 345,506 + ABIE40_RS21150 0.54 +0.7 345,516 + ABIE40_RS21150 0.55 -0.2 345,516 + ABIE40_RS21150 0.55 +0.4 345,516 + ABIE40_RS21150 0.55 +0.4 345,517 - ABIE40_RS21150 0.55 +1.3 345,517 - ABIE40_RS21150 0.55 -0.1 345,517 - ABIE40_RS21150 0.55 -0.2 345,517 - ABIE40_RS21150 0.55 +0.7 345,517 - ABIE40_RS21150 0.55 +0.3 345,517 - ABIE40_RS21150 0.55 -0.7 345,518 - ABIE40_RS21150 0.55 +0.0 345,519 - ABIE40_RS21150 0.56 -0.4 345,519 - ABIE40_RS21150 0.56 -1.3 345,519 - ABIE40_RS21150 0.56 +0.7 345,519 - ABIE40_RS21150 0.56 +0.5 345,519 - ABIE40_RS21150 0.56 -0.1 345,519 - ABIE40_RS21150 0.56 -0.7 345,519 - ABIE40_RS21150 0.56 -0.5 345,519 - ABIE40_RS21150 0.56 +0.7 345,519 - ABIE40_RS21150 0.56 +0.8 345,519 - ABIE40_RS21150 0.56 -0.8 345,519 - ABIE40_RS21150 0.56 -1.6 345,602 + ABIE40_RS21150 0.64 +1.3 345,602 + ABIE40_RS21150 0.64 -0.0 345,603 - ABIE40_RS21150 0.64 -0.4 345,686 + ABIE40_RS21150 0.73 -0.9 345,791 + ABIE40_RS21150 0.84 +0.9 345,791 + ABIE40_RS21150 0.84 -0.1 345,791 + ABIE40_RS21150 0.84 +2.3 345,792 - ABIE40_RS21150 0.84 -1.3 345,792 - ABIE40_RS21150 0.84 -0.1 345,827 + ABIE40_RS21150 0.88 -1.8 345,827 + ABIE40_RS21150 0.88 +0.9 345,828 - ABIE40_RS21150 0.88 -0.5 345,828 - ABIE40_RS21150 0.88 -0.4 345,828 - ABIE40_RS21150 0.88 +0.3 345,962 + +1.0 346,007 + +1.3 346,008 + +0.6 346,008 + +0.4 346,008 + -1.1 346,008 + -0.6 346,008 + +1.5 346,008 + -2.4 346,008 + +0.6 346,009 - +0.5 346,009 - -0.9 346,010 + -0.5 346,010 + -0.7 346,010 + +0.1 346,010 + +0.7 346,010 + +0.1 346,011 - +0.2 346,011 - -0.1 346,017 - +0.7 346,017 - -2.3 346,017 - -1.4 346,017 - +1.0 346,061 + ABIE40_RS21155 0.10 +0.5 346,061 + ABIE40_RS21155 0.10 -0.4 346,061 + ABIE40_RS21155 0.10 +0.5 346,062 - ABIE40_RS21155 0.10 +0.4 346,134 + ABIE40_RS21155 0.17 -0.9 346,134 + ABIE40_RS21155 0.17 +0.7 346,134 + ABIE40_RS21155 0.17 +0.3 346,134 + ABIE40_RS21155 0.17 -0.7 346,135 - ABIE40_RS21155 0.18 -0.1 346,135 - ABIE40_RS21155 0.18 +1.3 346,135 - ABIE40_RS21155 0.18 +2.9 346,135 - ABIE40_RS21155 0.18 +0.5 346,208 + ABIE40_RS21155 0.25 +0.3 346,208 + ABIE40_RS21155 0.25 +0.7 346,208 + ABIE40_RS21155 0.25 -0.3 346,208 + ABIE40_RS21155 0.25 +2.0 346,209 - ABIE40_RS21155 0.25 -0.6 346,209 - ABIE40_RS21155 0.25 +0.6 346,346 - ABIE40_RS21155 0.39 +0.4
Or see this region's nucleotide sequence