Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08240

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS08235 and ABIE40_RS08240 are separated by 36 nucleotidesABIE40_RS08240 and ABIE40_RS08245 are separated by 140 nucleotidesABIE40_RS08245 and ABIE40_RS08250 are separated by 86 nucleotides ABIE40_RS08235: ABIE40_RS08235 - LysR family transcriptional regulator, at 1,586,111 to 1,587,073 _RS08235 ABIE40_RS08240: ABIE40_RS08240 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 1,587,110 to 1,589,098 _RS08240 ABIE40_RS08245: ABIE40_RS08245 - PilZ domain-containing protein, at 1,589,239 to 1,589,574 _RS08245 ABIE40_RS08250: ABIE40_RS08250 - DMT family transporter, at 1,589,661 to 1,590,542 _RS08250 Position (kb) 1587 1588 1589 1590Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1586.222 kb on + strand, within ABIE40_RS08235at 1586.223 kb on - strand, within ABIE40_RS08235at 1586.572 kb on + strand, within ABIE40_RS08235at 1586.588 kb on - strand, within ABIE40_RS08235at 1586.719 kb on + strand, within ABIE40_RS08235at 1586.720 kb on - strand, within ABIE40_RS08235at 1586.720 kb on - strand, within ABIE40_RS08235at 1586.720 kb on - strand, within ABIE40_RS08235at 1586.762 kb on + strand, within ABIE40_RS08235at 1586.900 kb on + strand, within ABIE40_RS08235at 1586.924 kb on + strand, within ABIE40_RS08235at 1586.924 kb on + strand, within ABIE40_RS08235at 1586.924 kb on + strand, within ABIE40_RS08235at 1586.924 kb on + strand, within ABIE40_RS08235at 1587.071 kb on + strandat 1587.071 kb on + strandat 1587.326 kb on - strand, within ABIE40_RS08240at 1587.394 kb on - strand, within ABIE40_RS08240at 1587.394 kb on - strand, within ABIE40_RS08240at 1587.505 kb on - strand, within ABIE40_RS08240at 1587.505 kb on - strand, within ABIE40_RS08240at 1587.505 kb on - strand, within ABIE40_RS08240at 1587.505 kb on - strand, within ABIE40_RS08240at 1587.534 kb on + strand, within ABIE40_RS08240at 1587.534 kb on + strand, within ABIE40_RS08240at 1587.534 kb on + strand, within ABIE40_RS08240at 1587.535 kb on - strand, within ABIE40_RS08240at 1587.535 kb on - strand, within ABIE40_RS08240at 1587.565 kb on - strand, within ABIE40_RS08240at 1587.699 kb on + strand, within ABIE40_RS08240at 1587.700 kb on - strand, within ABIE40_RS08240at 1587.705 kb on + strand, within ABIE40_RS08240at 1587.705 kb on + strand, within ABIE40_RS08240at 1587.706 kb on - strand, within ABIE40_RS08240at 1587.754 kb on + strand, within ABIE40_RS08240at 1587.754 kb on + strand, within ABIE40_RS08240at 1587.754 kb on + strand, within ABIE40_RS08240at 1587.755 kb on - strand, within ABIE40_RS08240at 1587.755 kb on - strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.756 kb on + strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.757 kb on - strand, within ABIE40_RS08240at 1587.759 kb on + strand, within ABIE40_RS08240at 1587.759 kb on + strand, within ABIE40_RS08240at 1587.760 kb on - strand, within ABIE40_RS08240at 1587.760 kb on - strand, within ABIE40_RS08240at 1587.760 kb on - strand, within ABIE40_RS08240at 1587.855 kb on + strand, within ABIE40_RS08240at 1587.855 kb on + strand, within ABIE40_RS08240at 1587.855 kb on + strand, within ABIE40_RS08240at 1587.855 kb on + strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.856 kb on - strand, within ABIE40_RS08240at 1587.915 kb on + strand, within ABIE40_RS08240at 1587.916 kb on - strand, within ABIE40_RS08240at 1587.916 kb on - strand, within ABIE40_RS08240at 1587.921 kb on + strand, within ABIE40_RS08240at 1587.922 kb on - strand, within ABIE40_RS08240at 1587.922 kb on - strand, within ABIE40_RS08240at 1587.922 kb on - strand, within ABIE40_RS08240at 1587.960 kb on + strand, within ABIE40_RS08240at 1587.961 kb on - strand, within ABIE40_RS08240at 1588.056 kb on + strand, within ABIE40_RS08240at 1588.056 kb on + strand, within ABIE40_RS08240at 1588.056 kb on + strand, within ABIE40_RS08240at 1588.056 kb on + strand, within ABIE40_RS08240at 1588.057 kb on - strand, within ABIE40_RS08240at 1588.057 kb on - strand, within ABIE40_RS08240at 1588.297 kb on - strand, within ABIE40_RS08240at 1588.367 kb on + strand, within ABIE40_RS08240at 1588.370 kb on - strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.560 kb on + strand, within ABIE40_RS08240at 1588.561 kb on - strand, within ABIE40_RS08240at 1588.561 kb on - strand, within ABIE40_RS08240at 1588.561 kb on - strand, within ABIE40_RS08240at 1588.680 kb on + strand, within ABIE40_RS08240at 1588.680 kb on + strand, within ABIE40_RS08240at 1588.769 kb on - strand, within ABIE40_RS08240at 1588.779 kb on + strand, within ABIE40_RS08240at 1588.779 kb on + strand, within ABIE40_RS08240at 1588.779 kb on + strand, within ABIE40_RS08240at 1588.780 kb on - strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.788 kb on + strand, within ABIE40_RS08240at 1588.789 kb on - strand, within ABIE40_RS08240at 1588.789 kb on - strand, within ABIE40_RS08240at 1588.789 kb on - strand, within ABIE40_RS08240at 1588.789 kb on - strand, within ABIE40_RS08240at 1588.920 kb on + strandat 1588.920 kb on + strandat 1588.920 kb on + strandat 1588.921 kb on - strandat 1588.921 kb on - strandat 1588.923 kb on + strandat 1588.923 kb on + strandat 1588.923 kb on + strandat 1588.924 kb on - strandat 1588.929 kb on + strandat 1588.929 kb on + strandat 1589.146 kb on + strandat 1589.146 kb on + strandat 1589.146 kb on + strandat 1589.146 kb on + strandat 1589.147 kb on - strandat 1589.528 kb on + strand, within ABIE40_RS08245at 1589.529 kb on - strand, within ABIE40_RS08245at 1589.529 kb on - strand, within ABIE40_RS08245at 1589.529 kb on - strand, within ABIE40_RS08245at 1589.663 kb on - strandat 1589.754 kb on - strand, within ABIE40_RS08250at 1589.803 kb on + strand, within ABIE40_RS08250at 1589.803 kb on + strand, within ABIE40_RS08250at 1589.804 kb on - strand, within ABIE40_RS08250at 1589.804 kb on - strand, within ABIE40_RS08250at 1589.818 kb on + strand, within ABIE40_RS08250at 1589.818 kb on + strand, within ABIE40_RS08250at 1589.819 kb on - strand, within ABIE40_RS08250at 1589.819 kb on - strand, within ABIE40_RS08250at 1589.819 kb on - strand, within ABIE40_RS08250at 1589.857 kb on + strand, within ABIE40_RS08250at 1589.858 kb on - strand, within ABIE40_RS08250at 1589.858 kb on - strand, within ABIE40_RS08250at 1589.875 kb on + strand, within ABIE40_RS08250at 1589.875 kb on + strand, within ABIE40_RS08250at 1589.947 kb on + strand, within ABIE40_RS08250at 1589.948 kb on - strand, within ABIE40_RS08250at 1589.995 kb on + strand, within ABIE40_RS08250at 1589.995 kb on + strand, within ABIE40_RS08250at 1589.995 kb on + strand, within ABIE40_RS08250at 1589.996 kb on - strand, within ABIE40_RS08250at 1589.996 kb on - strand, within ABIE40_RS08250at 1589.996 kb on - strand, within ABIE40_RS08250at 1589.996 kb on - strand, within ABIE40_RS08250at 1589.996 kb on - strand, within ABIE40_RS08250at 1590.011 kb on + strand, within ABIE40_RS08250at 1590.011 kb on + strand, within ABIE40_RS08250at 1590.011 kb on + strand, within ABIE40_RS08250at 1590.011 kb on + strand, within ABIE40_RS08250at 1590.011 kb on + strand, within ABIE40_RS08250at 1590.011 kb on + strand, within ABIE40_RS08250at 1590.012 kb on - strand, within ABIE40_RS08250at 1590.012 kb on - strand, within ABIE40_RS08250at 1590.012 kb on - strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.052 kb on + strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250at 1590.053 kb on - strand, within ABIE40_RS08250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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1,586,222 + ABIE40_RS08235 0.12 +0.0
1,586,223 - ABIE40_RS08235 0.12 -1.5
1,586,572 + ABIE40_RS08235 0.48 +1.2
1,586,588 - ABIE40_RS08235 0.50 +0.6
1,586,719 + ABIE40_RS08235 0.63 -1.6
1,586,720 - ABIE40_RS08235 0.63 -0.2
1,586,720 - ABIE40_RS08235 0.63 +0.8
1,586,720 - ABIE40_RS08235 0.63 -1.3
1,586,762 + ABIE40_RS08235 0.68 +0.7
1,586,900 + ABIE40_RS08235 0.82 -0.4
1,586,924 + ABIE40_RS08235 0.84 -0.3
1,586,924 + ABIE40_RS08235 0.84 +0.1
1,586,924 + ABIE40_RS08235 0.84 +1.1
1,586,924 + ABIE40_RS08235 0.84 -0.3
1,587,071 + +0.2
1,587,071 + +0.2
1,587,326 - ABIE40_RS08240 0.11 +0.7
1,587,394 - ABIE40_RS08240 0.14 +0.5
1,587,394 - ABIE40_RS08240 0.14 -0.5
1,587,505 - ABIE40_RS08240 0.20 +0.5
1,587,505 - ABIE40_RS08240 0.20 +0.6
1,587,505 - ABIE40_RS08240 0.20 +0.5
1,587,505 - ABIE40_RS08240 0.20 -1.0
1,587,534 + ABIE40_RS08240 0.21 -1.1
1,587,534 + ABIE40_RS08240 0.21 +0.3
1,587,534 + ABIE40_RS08240 0.21 -0.9
1,587,535 - ABIE40_RS08240 0.21 +0.3
1,587,535 - ABIE40_RS08240 0.21 +0.4
1,587,565 - ABIE40_RS08240 0.23 -0.3
1,587,699 + ABIE40_RS08240 0.30 +0.5
1,587,700 - ABIE40_RS08240 0.30 -0.9
1,587,705 + ABIE40_RS08240 0.30 +1.4
1,587,705 + ABIE40_RS08240 0.30 -0.9
1,587,706 - ABIE40_RS08240 0.30 +0.9
1,587,754 + ABIE40_RS08240 0.32 +0.2
1,587,754 + ABIE40_RS08240 0.32 -0.6
1,587,754 + ABIE40_RS08240 0.32 +1.7
1,587,755 - ABIE40_RS08240 0.32 +1.2
1,587,755 - ABIE40_RS08240 0.32 -0.7
1,587,756 + ABIE40_RS08240 0.32 +0.5
1,587,756 + ABIE40_RS08240 0.32 -0.6
1,587,756 + ABIE40_RS08240 0.32 +0.7
1,587,756 + ABIE40_RS08240 0.32 -0.6
1,587,756 + ABIE40_RS08240 0.32 -0.2
1,587,756 + ABIE40_RS08240 0.32 +0.1
1,587,756 + ABIE40_RS08240 0.32 -0.5
1,587,757 - ABIE40_RS08240 0.33 -2.2
1,587,757 - ABIE40_RS08240 0.33 -2.0
1,587,757 - ABIE40_RS08240 0.33 -0.2
1,587,757 - ABIE40_RS08240 0.33 +0.4
1,587,757 - ABIE40_RS08240 0.33 +0.8
1,587,757 - ABIE40_RS08240 0.33 +0.5
1,587,757 - ABIE40_RS08240 0.33 -0.8
1,587,759 + ABIE40_RS08240 0.33 +0.1
1,587,759 + ABIE40_RS08240 0.33 -0.6
1,587,760 - ABIE40_RS08240 0.33 -0.9
1,587,760 - ABIE40_RS08240 0.33 +0.5
1,587,760 - ABIE40_RS08240 0.33 -1.0
1,587,855 + ABIE40_RS08240 0.37 -0.6
1,587,855 + ABIE40_RS08240 0.37 -0.1
1,587,855 + ABIE40_RS08240 0.37 +1.5
1,587,855 + ABIE40_RS08240 0.37 -0.2
1,587,856 - ABIE40_RS08240 0.38 -0.8
1,587,856 - ABIE40_RS08240 0.38 +0.5
1,587,856 - ABIE40_RS08240 0.38 +0.7
1,587,856 - ABIE40_RS08240 0.38 -2.1
1,587,856 - ABIE40_RS08240 0.38 +0.8
1,587,856 - ABIE40_RS08240 0.38 -1.3
1,587,856 - ABIE40_RS08240 0.38 +0.5
1,587,856 - ABIE40_RS08240 0.38 +2.2
1,587,856 - ABIE40_RS08240 0.38 -0.3
1,587,856 - ABIE40_RS08240 0.38 +0.5
1,587,915 + ABIE40_RS08240 0.40 -0.7
1,587,916 - ABIE40_RS08240 0.41 +2.4
1,587,916 - ABIE40_RS08240 0.41 -0.9
1,587,921 + ABIE40_RS08240 0.41 +0.8
1,587,922 - ABIE40_RS08240 0.41 +0.6
1,587,922 - ABIE40_RS08240 0.41 +0.1
1,587,922 - ABIE40_RS08240 0.41 +0.3
1,587,960 + ABIE40_RS08240 0.43 -1.0
1,587,961 - ABIE40_RS08240 0.43 -1.5
1,588,056 + ABIE40_RS08240 0.48 +1.1
1,588,056 + ABIE40_RS08240 0.48 +0.5
1,588,056 + ABIE40_RS08240 0.48 -0.1
1,588,056 + ABIE40_RS08240 0.48 -1.6
1,588,057 - ABIE40_RS08240 0.48 +0.1
1,588,057 - ABIE40_RS08240 0.48 -0.2
1,588,297 - ABIE40_RS08240 0.60 -0.4
1,588,367 + ABIE40_RS08240 0.63 -3.2
1,588,370 - ABIE40_RS08240 0.63 +0.1
1,588,560 + ABIE40_RS08240 0.73 -0.8
1,588,560 + ABIE40_RS08240 0.73 -0.4
1,588,560 + ABIE40_RS08240 0.73 +0.3
1,588,560 + ABIE40_RS08240 0.73 -0.1
1,588,560 + ABIE40_RS08240 0.73 -0.1
1,588,560 + ABIE40_RS08240 0.73 +0.5
1,588,560 + ABIE40_RS08240 0.73 +0.4
1,588,561 - ABIE40_RS08240 0.73 +0.2
1,588,561 - ABIE40_RS08240 0.73 -0.6
1,588,561 - ABIE40_RS08240 0.73 -0.3
1,588,680 + ABIE40_RS08240 0.79 -0.0
1,588,680 + ABIE40_RS08240 0.79 -0.4
1,588,769 - ABIE40_RS08240 0.83 -0.2
1,588,779 + ABIE40_RS08240 0.84 -0.3
1,588,779 + ABIE40_RS08240 0.84 +0.0
1,588,779 + ABIE40_RS08240 0.84 +0.5
1,588,780 - ABIE40_RS08240 0.84 +0.8
1,588,788 + ABIE40_RS08240 0.84 +0.2
1,588,788 + ABIE40_RS08240 0.84 +1.1
1,588,788 + ABIE40_RS08240 0.84 -1.3
1,588,788 + ABIE40_RS08240 0.84 -0.3
1,588,788 + ABIE40_RS08240 0.84 +0.6
1,588,788 + ABIE40_RS08240 0.84 +0.8
1,588,788 + ABIE40_RS08240 0.84 +0.4
1,588,789 - ABIE40_RS08240 0.84 +1.1
1,588,789 - ABIE40_RS08240 0.84 +0.2
1,588,789 - ABIE40_RS08240 0.84 -0.3
1,588,789 - ABIE40_RS08240 0.84 -0.1
1,588,920 + -0.5
1,588,920 + -0.1
1,588,920 + +0.9
1,588,921 - +0.3
1,588,921 - -0.2
1,588,923 + +0.0
1,588,923 + +0.3
1,588,923 + +1.6
1,588,924 - -0.6
1,588,929 + +1.3
1,588,929 + -0.2
1,589,146 + +0.3
1,589,146 + -0.0
1,589,146 + +0.6
1,589,146 + +0.4
1,589,147 - +0.8
1,589,528 + ABIE40_RS08245 0.86 +0.1
1,589,529 - ABIE40_RS08245 0.86 +0.3
1,589,529 - ABIE40_RS08245 0.86 +0.4
1,589,529 - ABIE40_RS08245 0.86 +1.2
1,589,663 - -1.3
1,589,754 - ABIE40_RS08250 0.11 -1.3
1,589,803 + ABIE40_RS08250 0.16 -0.1
1,589,803 + ABIE40_RS08250 0.16 +0.8
1,589,804 - ABIE40_RS08250 0.16 +0.3
1,589,804 - ABIE40_RS08250 0.16 -0.1
1,589,818 + ABIE40_RS08250 0.18 +0.2
1,589,818 + ABIE40_RS08250 0.18 +0.4
1,589,819 - ABIE40_RS08250 0.18 -0.5
1,589,819 - ABIE40_RS08250 0.18 +0.1
1,589,819 - ABIE40_RS08250 0.18 +1.1
1,589,857 + ABIE40_RS08250 0.22 +0.3
1,589,858 - ABIE40_RS08250 0.22 -0.6
1,589,858 - ABIE40_RS08250 0.22 -1.5
1,589,875 + ABIE40_RS08250 0.24 -2.4
1,589,875 + ABIE40_RS08250 0.24 -0.2
1,589,947 + ABIE40_RS08250 0.32 -1.9
1,589,948 - ABIE40_RS08250 0.33 -0.7
1,589,995 + ABIE40_RS08250 0.38 +0.1
1,589,995 + ABIE40_RS08250 0.38 -1.1
1,589,995 + ABIE40_RS08250 0.38 +0.4
1,589,996 - ABIE40_RS08250 0.38 -0.5
1,589,996 - ABIE40_RS08250 0.38 -0.7
1,589,996 - ABIE40_RS08250 0.38 -0.9
1,589,996 - ABIE40_RS08250 0.38 +0.0
1,589,996 - ABIE40_RS08250 0.38 -0.4
1,590,011 + ABIE40_RS08250 0.40 +1.8
1,590,011 + ABIE40_RS08250 0.40 -0.2
1,590,011 + ABIE40_RS08250 0.40 -1.3
1,590,011 + ABIE40_RS08250 0.40 -0.3
1,590,011 + ABIE40_RS08250 0.40 +0.3
1,590,011 + ABIE40_RS08250 0.40 -1.0
1,590,012 - ABIE40_RS08250 0.40 +1.1
1,590,012 - ABIE40_RS08250 0.40 -0.2
1,590,012 - ABIE40_RS08250 0.40 +0.5
1,590,052 + ABIE40_RS08250 0.44 -0.4
1,590,052 + ABIE40_RS08250 0.44 -0.6
1,590,052 + ABIE40_RS08250 0.44 -0.2
1,590,052 + ABIE40_RS08250 0.44 -0.2
1,590,052 + ABIE40_RS08250 0.44 -0.6
1,590,052 + ABIE40_RS08250 0.44 +0.4
1,590,052 + ABIE40_RS08250 0.44 +0.4
1,590,052 + ABIE40_RS08250 0.44 +0.3
1,590,052 + ABIE40_RS08250 0.44 +1.4
1,590,053 - ABIE40_RS08250 0.44 +0.1
1,590,053 - ABIE40_RS08250 0.44 -0.5
1,590,053 - ABIE40_RS08250 0.44 -0.5
1,590,053 - ABIE40_RS08250 0.44 -0.2
1,590,053 - ABIE40_RS08250 0.44 +0.4
1,590,053 - ABIE40_RS08250 0.44 +1.8
1,590,053 - ABIE40_RS08250 0.44 +0.4
1,590,053 - ABIE40_RS08250 0.44 +0.3
1,590,053 - ABIE40_RS08250 0.44 -0.1
1,590,053 - ABIE40_RS08250 0.44 -1.5

Or see this region's nucleotide sequence