Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01245

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01240 and ABIE40_RS01245 are separated by 74 nucleotidesABIE40_RS01245 and ABIE40_RS01250 are separated by 236 nucleotidesABIE40_RS01250 and ABIE40_RS01255 are separated by 16 nucleotides ABIE40_RS01240: ABIE40_RS01240 - succinylglutamate desuccinylase/aspartoacylase family protein, at 244,708 to 245,769 _RS01240 ABIE40_RS01245: ABIE40_RS01245 - 2'-5' RNA ligase family protein, at 245,844 to 246,413 _RS01245 ABIE40_RS01250: ABIE40_RS01250 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 246,650 to 247,213 _RS01250 ABIE40_RS01255: ABIE40_RS01255 - glutamine-hydrolyzing GMP synthase, at 247,230 to 248,792 _RS01255 Position (kb) 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 244.957 kb on - strand, within ABIE40_RS01240at 244.971 kb on + strand, within ABIE40_RS01240at 245.057 kb on + strand, within ABIE40_RS01240at 245.057 kb on + strand, within ABIE40_RS01240at 245.057 kb on + strand, within ABIE40_RS01240at 245.057 kb on + strand, within ABIE40_RS01240at 245.057 kb on + strand, within ABIE40_RS01240at 245.058 kb on - strand, within ABIE40_RS01240at 245.058 kb on - strand, within ABIE40_RS01240at 245.058 kb on - strand, within ABIE40_RS01240at 245.174 kb on + strand, within ABIE40_RS01240at 245.174 kb on + strand, within ABIE40_RS01240at 245.175 kb on - strand, within ABIE40_RS01240at 245.175 kb on - strand, within ABIE40_RS01240at 245.297 kb on + strand, within ABIE40_RS01240at 245.297 kb on + strand, within ABIE40_RS01240at 245.297 kb on + strand, within ABIE40_RS01240at 245.298 kb on - strand, within ABIE40_RS01240at 245.298 kb on - strand, within ABIE40_RS01240at 245.303 kb on + strand, within ABIE40_RS01240at 245.303 kb on + strand, within ABIE40_RS01240at 245.303 kb on + strand, within ABIE40_RS01240at 245.303 kb on + strand, within ABIE40_RS01240at 245.303 kb on + strand, within ABIE40_RS01240at 245.304 kb on - strand, within ABIE40_RS01240at 245.304 kb on - strand, within ABIE40_RS01240at 245.304 kb on - strand, within ABIE40_RS01240at 245.304 kb on - strand, within ABIE40_RS01240at 245.666 kb on + strandat 245.666 kb on + strandat 245.666 kb on + strandat 245.666 kb on + strandat 245.667 kb on - strandat 245.667 kb on - strandat 245.667 kb on - strandat 245.667 kb on - strandat 245.667 kb on - strandat 245.667 kb on - strandat 245.667 kb on - strandat 245.764 kb on - strandat 245.805 kb on + strandat 245.805 kb on + strandat 245.805 kb on + strandat 245.805 kb on + strandat 245.805 kb on + strandat 245.805 kb on + strandat 245.806 kb on - strandat 245.806 kb on - strandat 245.806 kb on - strandat 245.806 kb on - strandat 245.874 kb on + strandat 245.874 kb on + strandat 245.874 kb on + strandat 245.874 kb on + strandat 245.874 kb on + strandat 245.874 kb on + strandat 245.875 kb on - strandat 245.875 kb on - strandat 245.875 kb on - strandat 245.875 kb on - strandat 245.977 kb on + strand, within ABIE40_RS01245at 245.977 kb on + strand, within ABIE40_RS01245at 245.977 kb on + strand, within ABIE40_RS01245at 245.978 kb on - strand, within ABIE40_RS01245at 245.978 kb on - strand, within ABIE40_RS01245at 245.978 kb on - strand, within ABIE40_RS01245at 245.991 kb on - strand, within ABIE40_RS01245at 245.991 kb on - strand, within ABIE40_RS01245at 245.991 kb on - strand, within ABIE40_RS01245at 246.364 kb on + strandat 246.364 kb on + strandat 246.364 kb on + strandat 246.365 kb on - strandat 246.551 kb on - strandat 246.613 kb on + strandat 246.613 kb on + strandat 246.613 kb on + strandat 246.613 kb on + strandat 246.614 kb on - strandat 246.614 kb on - strandat 246.671 kb on + strandat 246.672 kb on - strandat 246.672 kb on - strandat 246.678 kb on + strandat 246.678 kb on + strandat 246.679 kb on - strandat 246.679 kb on - strandat 246.679 kb on - strandat 246.679 kb on - strandat 246.783 kb on + strand, within ABIE40_RS01250at 246.783 kb on + strand, within ABIE40_RS01250at 246.783 kb on + strand, within ABIE40_RS01250at 246.784 kb on - strand, within ABIE40_RS01250at 246.784 kb on - strand, within ABIE40_RS01250at 246.784 kb on - strand, within ABIE40_RS01250at 246.858 kb on - strand, within ABIE40_RS01250at 246.935 kb on + strand, within ABIE40_RS01250at 246.935 kb on + strand, within ABIE40_RS01250at 246.935 kb on + strand, within ABIE40_RS01250at 246.935 kb on + strand, within ABIE40_RS01250at 246.936 kb on - strand, within ABIE40_RS01250at 246.936 kb on - strand, within ABIE40_RS01250at 246.936 kb on - strand, within ABIE40_RS01250at 246.936 kb on - strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.977 kb on + strand, within ABIE40_RS01250at 246.978 kb on - strand, within ABIE40_RS01250at 246.978 kb on - strand, within ABIE40_RS01250at 246.978 kb on - strand, within ABIE40_RS01250at 246.978 kb on - strand, within ABIE40_RS01250at 247.143 kb on + strand, within ABIE40_RS01250at 247.143 kb on + strand, within ABIE40_RS01250at 247.144 kb on - strand, within ABIE40_RS01250at 247.211 kb on + strandat 247.211 kb on + strandat 247.211 kb on + strandat 247.211 kb on + strandat 247.212 kb on - strandat 247.212 kb on - strandat 247.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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244,957 - ABIE40_RS01240 0.23 +1.9
244,971 + ABIE40_RS01240 0.25 -0.1
245,057 + ABIE40_RS01240 0.33 +0.7
245,057 + ABIE40_RS01240 0.33 -1.3
245,057 + ABIE40_RS01240 0.33 +0.3
245,057 + ABIE40_RS01240 0.33 -1.8
245,057 + ABIE40_RS01240 0.33 +0.3
245,058 - ABIE40_RS01240 0.33 -1.0
245,058 - ABIE40_RS01240 0.33 -0.6
245,058 - ABIE40_RS01240 0.33 -0.7
245,174 + ABIE40_RS01240 0.44 +4.9
245,174 + ABIE40_RS01240 0.44 -3.6
245,175 - ABIE40_RS01240 0.44 -1.5
245,175 - ABIE40_RS01240 0.44 -1.1
245,297 + ABIE40_RS01240 0.55 -1.3
245,297 + ABIE40_RS01240 0.55 +1.0
245,297 + ABIE40_RS01240 0.55 +0.4
245,298 - ABIE40_RS01240 0.56 +0.3
245,298 - ABIE40_RS01240 0.56 +1.4
245,303 + ABIE40_RS01240 0.56 -0.4
245,303 + ABIE40_RS01240 0.56 -2.9
245,303 + ABIE40_RS01240 0.56 -0.4
245,303 + ABIE40_RS01240 0.56 -1.0
245,303 + ABIE40_RS01240 0.56 -0.8
245,304 - ABIE40_RS01240 0.56 -1.3
245,304 - ABIE40_RS01240 0.56 +0.1
245,304 - ABIE40_RS01240 0.56 -0.3
245,304 - ABIE40_RS01240 0.56 -0.0
245,666 + +1.0
245,666 + -1.4
245,666 + -0.8
245,666 + -0.5
245,667 - -1.1
245,667 - +1.6
245,667 - -1.4
245,667 - -0.1
245,667 - +0.1
245,667 - -0.9
245,667 - -0.3
245,764 - +0.3
245,805 + +0.7
245,805 + -0.5
245,805 + +0.6
245,805 + -0.8
245,805 + +1.3
245,805 + -1.1
245,806 - +0.2
245,806 - +1.2
245,806 - +0.2
245,806 - -1.3
245,874 + +1.4
245,874 + +0.4
245,874 + -0.6
245,874 + -0.4
245,874 + -0.5
245,874 + +0.1
245,875 - -0.6
245,875 - +0.2
245,875 - +0.6
245,875 - -0.2
245,977 + ABIE40_RS01245 0.23 -0.1
245,977 + ABIE40_RS01245 0.23 -1.3
245,977 + ABIE40_RS01245 0.23 +0.6
245,978 - ABIE40_RS01245 0.24 +3.0
245,978 - ABIE40_RS01245 0.24 +0.8
245,978 - ABIE40_RS01245 0.24 -1.1
245,991 - ABIE40_RS01245 0.26 +2.4
245,991 - ABIE40_RS01245 0.26 -1.3
245,991 - ABIE40_RS01245 0.26 -1.1
246,364 + +2.9
246,364 + +1.9
246,364 + +0.7
246,365 - +0.3
246,551 - -0.1
246,613 + +0.6
246,613 + -0.5
246,613 + +0.7
246,613 + +0.0
246,614 - -0.2
246,614 - +1.9
246,671 + -1.0
246,672 - +0.1
246,672 - +0.1
246,678 + -0.1
246,678 + +0.7
246,679 - +1.9
246,679 - -2.3
246,679 - -0.1
246,679 - -0.4
246,783 + ABIE40_RS01250 0.24 -0.8
246,783 + ABIE40_RS01250 0.24 -0.2
246,783 + ABIE40_RS01250 0.24 +0.3
246,784 - ABIE40_RS01250 0.24 -2.4
246,784 - ABIE40_RS01250 0.24 -1.6
246,784 - ABIE40_RS01250 0.24 -1.0
246,858 - ABIE40_RS01250 0.37 -0.7
246,935 + ABIE40_RS01250 0.51 -1.9
246,935 + ABIE40_RS01250 0.51 +0.7
246,935 + ABIE40_RS01250 0.51 -0.9
246,935 + ABIE40_RS01250 0.51 +0.4
246,936 - ABIE40_RS01250 0.51 +0.3
246,936 - ABIE40_RS01250 0.51 -0.4
246,936 - ABIE40_RS01250 0.51 -0.1
246,936 - ABIE40_RS01250 0.51 -0.9
246,977 + ABIE40_RS01250 0.58 -0.5
246,977 + ABIE40_RS01250 0.58 -0.4
246,977 + ABIE40_RS01250 0.58 +2.0
246,977 + ABIE40_RS01250 0.58 -2.7
246,977 + ABIE40_RS01250 0.58 +0.7
246,977 + ABIE40_RS01250 0.58 -2.2
246,977 + ABIE40_RS01250 0.58 +0.2
246,977 + ABIE40_RS01250 0.58 +0.3
246,977 + ABIE40_RS01250 0.58 +0.4
246,978 - ABIE40_RS01250 0.58 +0.3
246,978 - ABIE40_RS01250 0.58 +0.9
246,978 - ABIE40_RS01250 0.58 +2.1
246,978 - ABIE40_RS01250 0.58 +0.3
247,143 + ABIE40_RS01250 0.87 +0.3
247,143 + ABIE40_RS01250 0.87 +0.5
247,144 - ABIE40_RS01250 0.88 -0.5
247,211 + +0.4
247,211 + -0.1
247,211 + -1.8
247,211 + +0.1
247,212 - +0.3
247,212 - +0.3
247,212 - +0.1

Or see this region's nucleotide sequence